mRNA_E-siliculosus-1a_F_contig1403.2388.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1403.2388.1 vs. uniprot
Match: A0A6H5JCG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG4_9PHAE) HSP 1 Score: 314 bits (805), Expect = 1.220e-103 Identity = 164/173 (94.80%), Postives = 168/173 (97.11%), Query Frame = 1
Query: 1 VVVSAETSSSSLPLLSVLRKEASRQEGGLRFAMNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSVVIDADTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRAEKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLKTSGAAKKR 519
VVVS+ETSS SLPLLS LR+EASRQE GLRFAMNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGS+VID DTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRA+KITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLK SGAAKKR
Sbjct: 36 VVVSSETSSHSLPLLSGLREEASRQEEGLRFAMNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSIVIDEDTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRADKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLKNSGAAKKR 208
BLAST of mRNA_E-siliculosus-1a_F_contig1403.2388.1 vs. uniprot
Match: D8LE47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE47_ECTSI) HSP 1 Score: 274 bits (700), Expect = 9.340e-89 Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 1
Query: 97 MNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSVVIDADTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRAEKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLKTSGAAKKR 519
MNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSVV+DADTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRAEKITAKLGEQEARLKDLNRVKAVPKPKPEDG LALLRWLKTSGAAKKR
Sbjct: 1 MNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSVVMDADTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRAEKITAKLGEQEARLKDLNRVKAVPKPKPEDGTLALLRWLKTSGAAKKR 141
BLAST of mRNA_E-siliculosus-1a_F_contig1403.2388.1 vs. uniprot
Match: A0A7S1BP69_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BP69_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 6.220e-13 Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 94 AMNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSVVIDADTGKAIGGWDPAWD----IFEAPAPRPLRPPKLHKNQRDRAQRAEKITAKLGEQEARLKDLNRVKAVPKP 453
A+ +LV+FG AL+PQ V G +W+ P++S R A +RK++I G++G+ D TG GWDPAWD I A LRPPKLHKN RDR RA I + + + R+ + K KP
Sbjct: 11 AIRKLVQFGEAALRPQLVNG--RWRKPQISPRYAARIRKESIACGTYGT--FDPTTGS---GWDPAWDSPGRIGTTSA---LRPPKLHKNYRDRENRATNIESLMEGMDERIDQFRKEKQDKKP 124
BLAST of mRNA_E-siliculosus-1a_F_contig1403.2388.1 vs. uniprot
Match: A0A7S4KCW7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCW7_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.410e-12 Identity = 57/144 (39.58%), Postives = 79/144 (54.86%), Query Frame = 1
Query: 94 AMNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSVVIDADTGKAIGGWDPAWDIFEAPAPRP---LRPPKLHKNQRDRAQRAEKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLKTSGAAKK 516
A+ L+R G +AL+PQ V KW+ P +S RKA V+RK AI+DG++GS D + GK GW+P WD PR LR PK K +R R RA KI + L + + R++ K KP+P G L L++ + KK
Sbjct: 15 AIRMLIRHGEQALRPQFVN--EKWRRPLISMRKAAVIRKGAIKDGTYGS--FDPENGK---GWNPMWDT-----PRKITSLRLPKETKRERTREARASKIESLLEQADDRIETYRLEKEALKPEP--GVLNLIKKMNKGTRRKK 144
BLAST of mRNA_E-siliculosus-1a_F_contig1403.2388.1 vs. uniprot
Match: A0A7S0AE13_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AE13_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.220e-11 Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 94 AMNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSVVIDADTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRAEKITAKLGEQEARLKDLNRVKAVPKPKP 459
A+ L R G EA KPQ V + W+ P VS R+A VLRK A+RDG++G+ D TG+ GWDP WD + +RPPK K +R R RA++I L + + +++ + + KP+P
Sbjct: 32 AVRLLKRHGEEAFKPQFVKES--WRKPAVSGREAAVLRKAAVRDGTYGA--FDPQTGR---GWDPLWD--KPGKVSSIRPPKETKRERTRESRAQRIEQLLEQADEKIESYRKAQLEKKPEP 144
BLAST of mRNA_E-siliculosus-1a_F_contig1403.2388.1 vs. uniprot
Match: A0A7R9ZNN0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZNN0_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.350e-9 Identity = 46/121 (38.02%), Postives = 63/121 (52.07%), Query Frame = 1
Query: 85 LRFAMNRLVRFGAEALKPQRVAG-----------AHKWQTPRVSRRKANVLRKKAIRDGSFGSVVIDADTGKAIGGWDPAWDI------FEAPAPRPLRPPKLHKNQRDRAQRAEKITAKL 396
+R A+ L + GAEALKPQ+V H W+ P VS+R VLRK+A+RDG++G+ D TG GWDP WD F+ ++P K +R R +RA+KI L
Sbjct: 1 MRAALRHLCQKGAEALKPQKVLSKAAENGFTYKETHVWRRPVVSKRVGKVLRKQALRDGTYGT--FDVTTGV---GWDPLWDPVLMPNQFKVSRYGRMQPKKKTSRERTREERAQKIEKNL 116 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1403.2388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1403.2388.1 >prot_E-siliculosus-1a_F_contig1403.2388.1 ID=prot_E-siliculosus-1a_F_contig1403.2388.1|Name=mRNA_E-siliculosus-1a_F_contig1403.2388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp MNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSVVback to top mRNA from alignment at E-siliculosus-1a_F_contig1403:22703..25986+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1403.2388.1 ID=mRNA_E-siliculosus-1a_F_contig1403.2388.1|Name=mRNA_E-siliculosus-1a_F_contig1403.2388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3284bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1403:22703..25986+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1403:22703..25986+ >mRNA_E-siliculosus-1a_F_contig1403.2388.1 ID=mRNA_E-siliculosus-1a_F_contig1403.2388.1|Name=mRNA_E-siliculosus-1a_F_contig1403.2388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1403:22703..25986+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |