mRNA_E-siliculosus-1a_F_contig1401.2378.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1401.2378.1 vs. uniprot
Match: D7FZT6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZT6_ECTSI) HSP 1 Score: 901 bits (2328), Expect = 5.010e-306 Identity = 995/1370 (72.63%), Postives = 999/1370 (72.92%), Query Frame = 1
Query: 163 MSRSQRHANGGGKGNADVAKYRDACPASRSDSEIVELVKRMGGDQAKIQSALEDWWQNDQGEWATATXXXXXXXXXXXXXXXXXXXXXYANGRGMDDRRGGRGGMADKMRGLRLDGDRGGYRGGXXXXXXXXXXSAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXGWGASAKTPAAGSAWTGDGPAAXXXXXXXXXXXXXXPSASAVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMAHNGWSSSAQDPVAPGPVGSGSGSLGGXXXXXXXXXXXXXXXXXXXXXXAAAWAQSNLPATSAWSRGAATIINPKPKXXXXXXXAAAPAAPXXXXAXXXQXXXXXXXXXSAVAHPTLPVVASPGGEAVAATPPQTPRPQSSMPSVAETAAAAA-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-VPQQGDSXGGHGWQGQGSAYPGHHTSNAGXXGXXXXXXXXXXXXXXXXXXXXXXXXXSMQSQQYGYGST 4266
MSRSQRHANGGGKGNADVAKYRDACPASRSDSEIVELVK+MGGDQAKIQSALEDWWQNDQGEWATATXXXXXXXXXXXXXXXXXXXXXYANGRGMDDRRGGRGGMADKMRGLRLDGDRGGYRGGXXXXXXXXXXSAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX GASAK PAAGSAWTGDGPAA XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMAHNGWSSSAQDPVAPGPVGSGSGSLGGXXXXXXXXXXXXXXXXXXXXXXAAAWAQSNLPATSAWSRGAATIINPKPK XXX A X XXX XXXXXXXXX AHPTLPVVASPGGEAVAATPPQTPRPQ SMPSVAETAAAAA SPAIGS V XXXXXXXXXXXXXXXXXXXXXXXXXXXXX PS PATAPGSQLHLQKAQAQEASAVSKPTAATGASAPGEGLKMGKWGLSDTIANDESFLSFGQLSFGVPDVGGPESQSQQTSTSVGTSAGNGWGATSGSAMGWGTKDTATSPVETPGTKPPGFSSTVTASPSVPVGAGPPPGLPPLGNVKQ VHELEAEMDSLN KPHSQFSQVSKAQSKLPAAQQPQVQ XXXXXXXXXRPARQQGGRGGYNSKPQYSNSGSLPQQ XXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGYAPTPPGMPAQVGYQYTPSGQAYGSIYYGQQGPVQSNPYQYGYPPHQYPPSASQYQQGGGGQRFPNMPRGYPATEYGSQGGMGMGYGQMDYSASSQYGVPP GNGYMSDVGKEQYGDFGQDQFGMPQQMSGQGGXXXXXXXXXXXXXXXXXXXXXXX L+ S T S + + XXXXXXXXXXXXXXXXXXVNSHYXXXXXXXXX NSQGSRQAQGM XXXXXXX VPQQGDS GGHGWQGQGSAYPGHHTSNAGXX XXXXXXXXXXXXXXXXXXXXXXXXXSMQSQQYGYGST
Sbjct: 1 MSRSQRHANGGGKGNADVAKYRDACPASRSDSEIVELVKKMGGDQAKIQSALEDWWQNDQGEWATATXXXXXXXXXXXXXXXXXXXXXYANGRGMDDRRGGRGGMADKMRGLRLDGDRGGYRGGXXXXXXXXXXSAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GASAKAPAAGSAWTGDGPAAVSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMAHNGWSSSAQDPVAPGPVGSGSGSLGGXXXXXXXXXXXXXXXXXXXXXXAAAWAQSNLPATSAWSRGAATIINPKPKPVPVXXXVAX-------XXXXXXXXXXXXXXXXXAAHPTLPVVASPGGEAVAATPPQTPRPQGSMPSVAETAAAAAASPAIGSXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPSPVTAAVVTPATAPGSQLHLQKAQAQEASAVSKPTAATGASAPGEGLKMGKWGLSDTIANDESFLSFGQLSFGVPDVGGPESQSQQTSTSVGTSAGNGWGATSGSAMGWGTKDTATSPVETPGTKPPGFSSTVTASPSVPVGAGPPPGLPPLGNVKQ-VHELEAEMDSLN-KPHSQFSQVSKAQSKLPAAQQPQVQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXRPARQQGGRGGYNSKPQYSNSGSLPQQ-------------------------------------------------------------------------------------XXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGYAPTPPGMPAQVGYQYTPSGQAYGSIYYGQQGPVQSNPYQYGYPPHQYPPSASQYQQGGGGQRFPNMPRGYPATEYGSQGGMGMGYGQMDYSASSQYGVPPNGNGYMSDVGKEQYGDFGQDQFGMPQQMSGQGGXXXXXXXXXXXXXXXXXXXXXXXGV------------LAEASLTRFPRARSFS----------AXXXXXXXXXXXXXXXXXXXXXVNSHYXXXXXXXXXXNSQGSRQAQGMXXXXXXXXXVPQQGDSQGGHGWQGQGSAYPGHHTSNAGXX-XXXXXXXXXXXXXXXXXXXXXXXXXSMQSQQYGYGST 1070 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1401.2378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1401.2378.1 >prot_E-siliculosus-1a_F_contig1401.2378.1 ID=prot_E-siliculosus-1a_F_contig1401.2378.1|Name=mRNA_E-siliculosus-1a_F_contig1401.2378.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1422bp VGLQAGPKLNQPQGKYTLASVTALADPEGPPTLVCSTRELSCKETTRGSGback to top mRNA from alignment at E-siliculosus-1a_F_contig1401:15950..29751+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1401.2378.1 ID=mRNA_E-siliculosus-1a_F_contig1401.2378.1|Name=mRNA_E-siliculosus-1a_F_contig1401.2378.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=13802bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1401:15950..29751+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1401:15950..29751+ >mRNA_E-siliculosus-1a_F_contig1401.2378.1 ID=mRNA_E-siliculosus-1a_F_contig1401.2378.1|Name=mRNA_E-siliculosus-1a_F_contig1401.2378.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=8532bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1401:15950..29751+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |