mRNA_E-siliculosus-1a_F_contig140.2362.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig140.2362.1
Unique NamemRNA_E-siliculosus-1a_F_contig140.2362.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2362.1 vs. uniprot
Match: D7FX14_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX14_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 6.020e-29
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 QVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLSKK 177
            +VEATQIM IRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLSKK
Sbjct:  179 KVEATQIMHIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLSKK 237
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2362.1 vs. uniprot
Match: A0A6H5JGP1_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 8.700e-29
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 QVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLSKK 177
            +VEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVD VIKLSKK
Sbjct:  180 KVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK 238
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2362.1 vs. uniprot
Match: A0A7S2CF89_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CF89_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.030e-21
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 QVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLSK 174
            +VEA QIMRI++N+VRMYA MTGQTQEQI IDLDRDNFMSAQ A +YGLVD VI+LS+
Sbjct:  205 KVEAAQIMRIKENLVRMYAQMTGQTQEQIIIDLDRDNFMSAQQAMEYGLVDQVIELSE 262
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2362.1 vs. uniprot
Match: A0A7S2NSD7_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSD7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.580e-20
Identity = 43/59 (72.88%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLSKK 177
            +VEA QIMRIRDNIV+MY+MM+GQTQEQIT DLDRDNFMSAQ A +YGLVD V+++ ++
Sbjct:  222 KVEAAQIMRIRDNIVKMYSMMSGQTQEQITTDLDRDNFMSAQQALEYGLVDRVVEMPRE 280
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2362.1 vs. uniprot
Match: A0A7S0ACV0_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ACV0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.930e-20
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 QVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIK 165
            +VEA QIMRIRDNIV+MY+MMTGQT EQIT DLDRDNF+SAQ A DYGL+D +++
Sbjct:   82 KVEAAQIMRIRDNIVKMYSMMTGQTTEQITKDLDRDNFLSAQEAVDYGLIDRILE 136
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2362.1 vs. uniprot
Match: A0A7S0KYD1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KYD1_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.450e-20
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 QVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLSKK 177
            +VEA QIMRIRDN+V+MY+M TGQTQ+QIT DLDRDNFMSAQ A +YGL+D V++ SK+
Sbjct:  202 KVEAAQIMRIRDNLVKMYSMFTGQTQDQITRDLDRDNFMSAQEAVEYGLIDRVLEYSKE 260
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2362.1 vs. uniprot
Match: A0A835Z885_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z885_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.340e-20
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLSKK 177
            +VEATQIMRIRDNIVRMYA M+G+TQE++T  LDRDNFMSAQAA ++GL+D +I+L K+
Sbjct:  204 KVEATQIMRIRDNIVRMYAQMSGRTQEEVTRALDRDNFMSAQAALEFGLIDQIIELKKE 262
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2362.1 vs. uniprot
Match: F0YKH8_AURAN (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YKH8_AURAN)

HSP 1 Score: 85.5 bits (210), Expect = 2.680e-19
Identity = 39/57 (68.42%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 QVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLS 171
            +VEA QI+RI++N+V++YAMMTGQTQ+QI +DLDRDNFMSAQ A DYG++D VI +S
Sbjct:  140 KVEAAQIIRIKENLVKLYAMMTGQTQDQIILDLDRDNFMSAQEACDYGIIDKVIPVS 196
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig140.2362.1 vs. uniprot
Match: A0A7S4N7H3_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N7H3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.500e-19
Identity = 40/59 (67.80%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLSKK 177
            +VEA Q+MRIRDN+V+MY+MM+GQT EQIT DLDRDNFMSAQ A +YGL+D V++++K+
Sbjct:  202 KVEAAQVMRIRDNLVKMYSMMSGQTTEQITKDLDRDNFMSAQDAMEYGLIDRVLEVAKE 260
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig140.2362.1 vs. uniprot
Match: A0A7S2N232_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N232_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 4.250e-19
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 QVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKL 168
            +VEA QIMRIRDN+V+MYAMMTGQTQ+QI  DLDRDNF+SAQ A +YGLVD V+++
Sbjct:  192 KVEAAQIMRIRDNLVKMYAMMTGQTQDQIISDLDRDNFLSAQEAMEYGLVDRVLEI 247
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig140.2362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX14_ECTSI6.020e-2996.61ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6H5JGP1_9PHAE8.700e-2996.61ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2CF89_9STRA8.030e-2177.59ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2NSD7_9STRA1.580e-2072.88ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S0ACV0_9STRA1.930e-2074.55ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S0KYD1_9STRA4.450e-2071.19ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835Z885_9STRA8.340e-2071.19ATP-dependent Clp protease proteolytic subunit n=1... [more]
F0YKH8_AURAN2.680e-1968.42ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S4N7H3_9STRA3.500e-1967.80ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S2N232_9STRA4.250e-1973.21ATP-dependent Clp protease proteolytic subunit n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig140contigE-siliculosus-1a_F_contig140:32..1056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size159
Model size180
Exons2
Ec32 orthologEc-10_003920.1
Ec32 ortholog descriptionATP-dependent Clp protease, proteolytic subunit
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko01000,ko01002
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.OU
EC3.4.21.92
EggNOG OGsCOG0740@1,KOG0840@2759
EggNOG free text desc.serine-type endopeptidase activity
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009368,GO:0009536,GO:0009987,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0031974,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051603,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
KEGG Pathwayko04112,ko04212,map04112,map04212
KEGG koko:K01358
Preferred nameclpP
Seed eggNOG ortholog44056.XP_009040903.1
Seed ortholog evalue1.7e-12
Seed ortholog score77.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig140.2362.1prot_E-siliculosus-1a_F_contig140.2362.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig140 53..1056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927913.1582713-UTR-E-siliculosus-1a_F_contig140:31..521622927913.1582713-UTR-E-siliculosus-1a_F_contig140:31..52Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 32..52 +
1696318734.978304-UTR-E-siliculosus-1a_F_contig140:31..521696318734.978304-UTR-E-siliculosus-1a_F_contig140:31..52Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 32..52 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927913.1749752-CDS-E-siliculosus-1a_F_contig140:52..1241622927913.1749752-CDS-E-siliculosus-1a_F_contig140:52..124Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 53..124 +
1696318734.9877164-CDS-E-siliculosus-1a_F_contig140:52..1241696318734.9877164-CDS-E-siliculosus-1a_F_contig140:52..124Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 53..124 +
1622927913.191853-CDS-E-siliculosus-1a_F_contig140:969..10561622927913.191853-CDS-E-siliculosus-1a_F_contig140:969..1056Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 970..1056 +
1696318734.995331-CDS-E-siliculosus-1a_F_contig140:969..10561696318734.995331-CDS-E-siliculosus-1a_F_contig140:969..1056Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 970..1056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig140.2362.1

>prot_E-siliculosus-1a_F_contig140.2362.1 ID=prot_E-siliculosus-1a_F_contig140.2362.1|Name=mRNA_E-siliculosus-1a_F_contig140.2362.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp
MRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLS
KK*
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mRNA from alignment at E-siliculosus-1a_F_contig140:32..1056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig140.2362.1 ID=mRNA_E-siliculosus-1a_F_contig140.2362.1|Name=mRNA_E-siliculosus-1a_F_contig140.2362.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1025bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig140:32..1056+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGTGGAGGCGACACAGATCATGCGCATCCGCGACAACATCGTCCGGAT
GTACGCCATGATGACGGGGCAGACCCAGGAGCAGATCACCATTGTGAGCG
AAACAGATTTGCGATAAACGCACAAGAAAAACACAGGAAACAATAGTCGC
CACTTGTTGACACTAGTGACTCGTTTCAAGCTCTTCTTGGGGGGAAATTG
TTTTTTTTTCTTTTTTGTGGAGTGCTTGCGCACTTGTGGCACGTGCATGG
CTTGATTGACTCCTCCCCTCTCGAAAATTTCCCCTCCCAAGACTGAGCTT
GTGTTCGGACTTGTTGTGTCGAGAGCTCATGTTTTCGGGATCTGTGAAGA
CATCAATCGCTCTGCCTGTGGTTCCGGGGACCACGTTGCCCTAAAATGGG
TTTAGTCAACACGCATATTGAAGATTTAAGGGGACGTGTTTTGGACGGGT
TGAGGCCGGGGCTTATTTAACCGTTGCCCGTTCAGGCCGTGTAGCACGCT
GTCGCTTTTGGCAGCGGAGGACGTGGATACACAAACTAACGTCTGAAGGT
ATAGGCTGACATCAAAGGGCTGTCCCCCGTAGTTTAATGCTTGTATTGAC
ACGTTGTCACTTTCGAGAGATCCCGCGGAGAACGTGCGACGGTAGTCTTT
GACAATTCTCGTTTATACCAGGGGGGCATGCATGATTTTGAGGCCGCGGA
ATAGAGAACAGGGACTCCACCTCCAAACCTGTTCAAGCGTGTGCGTGTGA
CTGTGGGAAAATCGTTCACCGGTGTCATGACCGCGGGTAATGCTGTGACA
TTTTGTTCGCCACTACGTTATGACTCTTGTTTTGGTCACCCACCTCAAGC
ACCGATTGACCACCGCCCGCCCCCCCCCCGCCACGTTCTCTCTCTCTCTC
ACTCGTGGCAATGTGGCTCCGACCTACCCGCCGCTCAGGACCTGGACCGC
GATAACTTCATGTCGGCACAAGCGGCCGCCGACTACGGCCTCGTGGACAA
CGTAATAAAGCTCTCCAAGAAATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig140:32..1056+

>mRNA_E-siliculosus-1a_F_contig140.2362.1 ID=mRNA_E-siliculosus-1a_F_contig140.2362.1|Name=mRNA_E-siliculosus-1a_F_contig140.2362.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig140:32..1056+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCATCCGCGACAACATCGTCCGGATGTACGCCATGATGACGGGGCA
GACCCAGGAGCAGATCACCATTATGCGCATCCGCGACAACATCGTCCGGA
TGTACGCCATGATGACGGGGCAGACCCAGGAGCAGATCACCATTGACCTG
GACCGCGATAACTTCATGTCGGCACAAGCGGCCGCCGACTACGGCCTCGT
GGACAACGTAATAAAGCTCTCCAAGAAATAGGACCTGGACCGCGATAACT
TCATGTCGGCACAAGCGGCCGCCGACTACGGCCTCGTGGACAACGTAATA
AAGCTCTCCAAGAAATAG
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