mRNA_E-siliculosus-1a_F_contig13966.2341.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13966.2341.1
Unique NamemRNA_E-siliculosus-1a_F_contig13966.2341.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13966.2341.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.120e-20
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:   40 RMANEGRWTDNGQPLTLAEGRTVMPMLDQAEQAIVARLLPSHAL 171
            RMANEGRWTDNGQPLTLAEGRTVMPMLDQAEQAIVARLLPSHAL
Sbjct:   54 RMANEGRWTDNGQPLTLAEGRTVMPMLDQAEQAIVARLLPSHAL 97
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BLAST of mRNA_E-siliculosus-1a_F_contig13966.2341.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.720e-13
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   40 RMANEGRWTDNGQPLTLAEGRTVMPMLDQAEQAIVARLLPSHAL 171
            RM N GRWTDNGQPL LAEGRTV+PML Q +QA  A LLPSHAL
Sbjct:  383 RMPNGGRWTDNGQPLPLAEGRTVIPMLAQGDQAFFALLLPSHAL 426
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13966.2341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8R1_9PHAE3.120e-20100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3W3_ECTSI4.720e-1377.27HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13966contigE-siliculosus-1a_F_contig13966:199..371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size171
Model size173
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Best tax levelEukaryota
COG Functional cat.O
EC2.3.2.26
EggNOG OGsCOG5021@1,KOG0939@2759
EggNOG free text desc.ubiquitin protein ligase activity
BRITEko00000,ko00001,ko01000,ko04121
Best eggNOG OGNA|NA|NA
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
KEGG Pathwayko04120,map04120
KEGG koko:K10592
Preferred nameUPL1
Seed eggNOG ortholog2880.D7G3W3
Seed ortholog evalue1.7e-10
Seed ortholog score71.2
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927908.8069148-CDS-E-siliculosus-1a_F_contig13966:198..3691622927908.8069148-CDS-E-siliculosus-1a_F_contig13966:198..369Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13966 199..369 +
1696318732.8129532-CDS-E-siliculosus-1a_F_contig13966:198..3691696318732.8129532-CDS-E-siliculosus-1a_F_contig13966:198..369Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13966 199..369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13966.2341.1prot_E-siliculosus-1a_F_contig13966.2341.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13966 199..369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13966.2341.1

>prot_E-siliculosus-1a_F_contig13966.2341.1 ID=prot_E-siliculosus-1a_F_contig13966.2341.1|Name=mRNA_E-siliculosus-1a_F_contig13966.2341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=57bp
AAGGVVAAGGGGGRMANEGRWTDNGQPLTLAEGRTVMPMLDQAEQAIVAR
LLPSHAL
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mRNA from alignment at E-siliculosus-1a_F_contig13966:199..371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13966.2341.1 ID=mRNA_E-siliculosus-1a_F_contig13966.2341.1|Name=mRNA_E-siliculosus-1a_F_contig13966.2341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=173bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13966:199..371+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGCCGGGGGCGTAGTCGCGGCGGGTGGCGGCGGCGGGCGGATGGCCAA
CGAGGGGCGTTGGACCGACAACGGGCAGCCGCTCACCCTGGCGGAGGGGA
GGACGGTGATGCCGATGCTGGACCAAGCGGAGCAGGCGATCGTCGCCCGT
CTGCTCCCGTCGCACGCGCTCGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13966:199..371+

>mRNA_E-siliculosus-1a_F_contig13966.2341.1 ID=mRNA_E-siliculosus-1a_F_contig13966.2341.1|Name=mRNA_E-siliculosus-1a_F_contig13966.2341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13966:199..371+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGCCGGGGGCGTAGTCGCGGCGGGTGGCGGCGGCGGGCGGATGGCCAA
CGAGGGGCGTTGGACCGACAACGGGCAGCCGCTCACCCTGGCGGAGGGGA
GGACGGTGATGCCGATGCTGGACCAAGCGGAGCAGGCGATCGTCGCCCGT
CTGCTCCCGTCGCACGCGCTCGCAGCCGGGGGCGTAGTCGCGGCGGGTGG
CGGCGGCGGGCGGATGGCCAACGAGGGGCGTTGGACCGACAACGGGCAGC
CGCTCACCCTGGCGGAGGGGAGGACGGTGATGCCGATGCTGGACCAAGCG
GAGCAGGCGATCGTCGCCCGTCTGCTCCCGTCGCACGCGCTC
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