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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1396.2339.1 vs. uniprot
Match: D7FJ24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ24_ECTSI) HSP 1 Score: 451 bits (1161), Expect = 3.200e-151 Identity = 276/317 (87.07%), Postives = 281/317 (88.64%), Query Frame = 1
Query: 1 MVERSAHDMGLADLRELMLDLAAASLDEEVNGSCETETCRALVAVVDAMPAREYGDAFSSLVSGLCDPSARGLESRMTTFTWPLLARNVPFKRSSSSPSHGSSGHGVXXXXXXXXXXXXVTIAADGVGITVAAAAATSAAVPSLSHEVCHRLLKERFLKDTSYVDAEESPEGLGRALKALDVLLENEDDVLESETQEGYKRQYVVVALANEMAAGSMAVSRTVKPDGDECRKMVRLLEGINRELTSVMQNSVQMSKTLLDLMKSKYTPFLPASSGVQSKLSFGGKTVTSFGGENSXXXXXXXXXXXXXXXXXETESQ 951
MVERSAHDMGLADLRELMLDLAAASLDEEVNGSCETETCRALVAVVDAMPAREYGDAFSSLV+GLCDPSARGLESR+TTFTWPLLARNVPFKRSS XXXXXXXXXXXX VPSLSHEVCHRLLKERFLKDTSY DAEESP+GLGRALKALDVLLENEDDVLESETQEGYKRQYVVVALANEMAAGSMAVSRT KPDGDEC+KMVRLLE INRELTSVMQNSVQMSKTLLDLMKSKYTPFLPASSGVQSKLSFGGKTVTSFGGE+SXXXXXXXXXXXXXXXXXETESQ
Sbjct: 1 MVERSAHDMGLADLRELMLDLAAASLDEEVNGSCETETCRALVAVVDAMPAREYGDAFSSLVAGLCDPSARGLESRVTTFTWPLLARNVPFKRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPSLSHEVCHRLLKERFLKDTSYADAEESPQGLGRALKALDVLLENEDDVLESETQEGYKRQYVVVALANEMAAGSMAVSRTAKPDGDECKKMVRLLEAINRELTSVMQNSVQMSKTLLDLMKSKYTPFLPASSGVQSKLSFGGKTVTSFGGEDSXXXXXXXXXXXXXXXXXETESQ 317
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 954 |
| Model size | 2205 |
| Exons | 6 |
| Ec32 ortholog | Ec-07_004660.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1396.2339.1 >prot_E-siliculosus-1a_F_contig1396.2339.1 ID=prot_E-siliculosus-1a_F_contig1396.2339.1|Name=mRNA_E-siliculosus-1a_F_contig1396.2339.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=318bp
MVERSAHDMGLADLRELMLDLAAASLDEEVNGSCETETCRALVAVVDAMP
AREYGDAFSSLVSGLCDPSARGLESRMTTFTWPLLARNVPFKRSSSSPSH
GSSGHGVVVGGGEGGNNNNVTIAADGVGITVAAAAATSAAVPSLSHEVCH
RLLKERFLKDTSYVDAEESPEGLGRALKALDVLLENEDDVLESETQEGYK
RQYVVVALANEMAAGSMAVSRTVKPDGDECRKMVRLLEGINRELTSVMQN
SVQMSKTLLDLMKSKYTPFLPASSGVQSKLSFGGKTVTSFGGENSSDDDD
DDDDDDEEEEDDETESQ* back to topmRNA from alignment at E-siliculosus-1a_F_contig1396:4156..9882+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1396.2339.1 ID=mRNA_E-siliculosus-1a_F_contig1396.2339.1|Name=mRNA_E-siliculosus-1a_F_contig1396.2339.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5727bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1396:4156..9882+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCGAACGAAGTGCCCACGATATGGGCCTTGCCGATCTCCGAGAACT
AATGCTGGACCTCGCTGCCGCATCGCTAGACGAGGAGGTGGTGAGTCGAT
TCGGGTCGAGACGAACCAACACAAGTACGGATCGCGAGTGCGTTGACAGA
CGCCACAGAAGCATTTTAGTTTGACACGGCGGATTTTGCCCGTTGGCCAT
GTCATCTCTCTGCTATTTTTTCTCGCCTCAGCATCGCATGTCACGATTCC
ATGTACGATATAATACCACCACGGCACGCTCCCTCACTCAATCACTCACC
CACCACGCACCATGCGGTGCTTGCATGTACCGCTCCGCTCCAAGAGGTGG
TGCAATTTGCAACAGTAGGCTGCGTGTATGCATCACGTGTACTGGCGTTT
CTTAGGCCATGGCTGGATCAGACGCGCGGTGATATCCCCATTTTGTTGGG
CGATTCATACAACCAAATTCAAGATGCTCTGCAACATACCATACCGTCTA
AGTCAAAGAGTAGCTTGTTTCTGAACAGCCCCTCTCGGACACAACAGAAT
AACGCGCGTCGGATCCATGTTGTTCGAGTTTGGTTGTGGTGTAGTGGTGG
TGTTGATAGGACAATTGACGACAAGTATGGCACTTTTGTATGCCAAATGA
AAAGAAGGCTCCCATTATGCATAACGAGTTTTTTTTCGAAGCAACGTAGA
AAATACAAGACAGTAGTGAGAAATGAAAAAGGTCCCGATTGATGTTGTTT
GTACGAACAGAACGGGTCCTGCGAGACCGAGACGTGTCGAGCCCTGGTGG
CCGTGGTGGATGCCATGCCGGCTCGAGAGTACGGCGACGCCTTCTCCTCG
CTGGTGTCCGGCTTGTGCGACCCCTCAGGTGAGCGGATTTGTCGATCGAG
TTCTTGTATGCGCTTTTCCCGCTGACTTGTTTGTGTGAAAAATGGTGCTG
CTACAATAAGTACCTGTGCTTGTAGATTCGCACGAACCAACGGAGAGCGG
TGAGTGAGTGATCATGATTTTTTTGTGTTGACTGTCAGGAATTGGACCGT
ACGCCTGTAGAGATCGCTTGCAAGAGCAGGTACGTACTCGTTTAGAGCTT
CGTTCCCCATTTAGGTTGTTTCGTGTTTTGGAAAGTTGCTCTGGCGTGGA
TGTGGCAACACGTCCATGTCGACATAGCTACAGAAGTGACGCATGCATAT
CAGTAGCTCTGGTTAGCAAAAAGACAAGACCAAACTCCTTTAGGCTCGAA
GGCTTGAAGCCCTCGATTCGGCACCCGCTTCGCCTGCTGGCGTCCGACTA
CAGTCACCGATCTACCTACCGCCTGCCATGTCAAGGAATTTCGTTGCCCT
CGTTTTTTTTTGTCCTGGCCAACGCCAAACAAGCCACCTCCCTTTCCATC
CACCTCTCCATCCAAACTGTTAATATCACCACCACTGCCACTATTTATCT
GCCTATCCTGAGTTTTGTTCGTTTTTTTTGTTGTTCCGTGTACGGCCTTG
TCTCTCTCGTCGTGTGGCGTTTCTTTGACGGCTTTGTCTCGTTTCGTGTT
TAGCGCGCGGACTAGAATCTCGGATGACGACTTTCACGTGGCCGCTCCTC
GCGAGGAACGTCCCGTTTAAGCGATCCTCCTCCTCTCCGTCTCACGGTTC
GAGCGGCCACGGCGTTGTCGTCGGGGGTGGGGAGGGGGGAAACAACAACA
ACGTCACAATAGCGGCCGATGGCGTCGGCATCACCGTTGCTGCGGCAGCT
GCGACTTCAGCTGCGGTGCCATCACTGAGCCACGAGGTCTGTCACCGGCT
GCTGAAGGAGCGGTTCCTGAAGGACACGTCGTACGTGGACGCGGAGGAAT
CGCCGGAAGGGCTCGGGCGTGCCCTCAAGGCGCTGGACGTGCTGCTGGAA
AACGAGGACGACGTGCTCGAGGTGATTGGTTGTCTTTGTGTTTGGTGCCG
GGTGTTGTTCTTCTTGTTGTCGATGCTTGGTTTGTCGTTGCCGCTGTTGC
TGCTTGTGCCTTGTATTTGGACCATTGTTGTTGTAGGTGGAGTTGGGTGC
AACTCTTTGCAGAGAGTAGGTGGCGAAAATGACATCGACTTGGAGTGGAT
GAACCTGCTGAATTTACAACTTGTCCTGGACGGCGCGTACGGAAAGCCCA
TCTCGAGGAAATAGTCTGTGCCAACTCGTTTTCTTTCATGGCAATTCCAA
TTCGCACGTGCGCACGTTTGTGCCACTGTAGACACCACGACGTTGCGCAT
CATGCCTGTACTTCAAAACGGGGAGGCTGTGTATTTGTTGGGATCCCTGA
CTCGTAGTTTCAAACAGGGGAGGAGAACTATGTGGATGTGGATGTTTTAA
GGTGACCTAAGTGCCGTCAGCGGTTGCTTCGCCCGTGCGCAATGCATAAA
ACGTACACGACGAACCAAGCAGGCACACTGCGGGCCAACCCCCCCCCCCG
TTTGTTCAGTAGAAAAACACCGCGGTGAAACATCGATCGCTGTTCTTGGA
TGCAGGTGGTGGACACAAAAACCGTACCTGGTGGTAAGGAAGGGGGGGGG
AACGAACAAGAGCTTATTATGTGAAACATTGGGGAAAACAGTAAATGAGC
GCCTCAGTGTCTGCGATGTCTCTATGAAGAGCAGTAGTGTAGTGACAAGT
CAGTGCCCCTTCCCGGGAAGAGAGACAAGAGGCGTGTTTAGCAGTGCAGC
GGTTATCGAAGCAACGAAAAAGAACACACGCGCGCACACGCTTCCTCCAA
TAAGTGGAAAAATCAAACGCGTGAACGCTAATTAGTCGCGTGATTCCCCC
GTCCCTCCCTCTCTCAAGTCTGAGACCCAGGAGGGCTACAAGCGGCAGTA
CGTTGTCGTGGCCCTCGCCAACGAGATGGCGGCGGGATCGATGGCGGTGT
CTCGGACCGTCAAGCCTGACGGGGACGAGTGCAGGAAGATGGTCCGATTG
TTGGAGGGCATCAACAGGGAGCTCACCAGCGTCATGCAGAACAGCGTCCA
GATGGTGAGCGGGCACGGGGCGATAGCCGCCGCGCGGTCGGTCGGTCGGT
CGGTCGGTCGCAAAAGGCGGGGGGGGGGCATGCACGCTGACTTGTCTTCC
CAAAATCCAAACAAAAAAACATAACTAAAACTAATTACTAATTTGTGTAC
CACAGCGTTTCCCAAGCAACCTCGAAAATCGACTCAATTTTCTATTATTT
GCGTTTCTTCTGCCCTCCGCCGGCGGGCTGGGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTC
TTCACATTAAAAGCCGTTCCGTTTTCTCTGCCCAGTACCTTCTTCTGTCC
GTACTTGTCTAACACTTGACGGGGCCGATTCACGTGGTCACAGACTAACT
TACCCCAAAAAGGTATACGAAAAAATAAAATGGACCCGAAGGTAGAAAAC
GAAAAAATACTTCCCAAATCACACTTTAGCCAAGATCGTACTCACACCTC
TCTATGTAGTTTATTGGATGAATATGTTTGCACGATTCTAGATTTCGGTA
CACAAAAGCTACTCTTTTCGTCTCCAAAATCCGTGGTAGGCGAGGAAATA
GATTTTGAGGGACAAAAGCTACCTGCCACGACGCTTTTAGCCGTTCCTAG
ACGAACGTGGCGGGACCAACCAAATCCTTGGGAAGTTCATGATTATCTAC
GATACGCATCGTGTGGGATTTCGAGATGATGATGTGCGTTGCAAATCAGC
GTGGGCCGGAGCTTCCCCGGAATCATCAAGCGGGTGCACATCGTCCACTT
ACTCTACCTCTCTGCAAGACATTCCCGAATATATGTGGGTCCTTGAGCGG
GTTCATGACAATAAACGATTAAAGTACATATTAGTTTGGTTTGTTTCGTG
TAGCGGAAAGCATCATCCGACAGACCCCCCGCCGAAGCATTGGTTCGTTT
GTCGTTTGGTTGTATCGTCGTGTGATCGTCTCCGCTCAGCCCCCACACCC
AGTGTCTCTGCTATCCTGGCTCACGACACTGGTTTCGACTCGACTCGTGA
TACGACACGAAATACGTCATATGGCCCGGCCTTTTCACCCCTCCCCGCCC
CCGCCCCCGCCCCCGGCTCGGCCCCGGGCCCGAGCAAATCTCCTCTGATC
TCGGCTTGTCGCCCCAAATGGATTCCGATTTGCCCGTTCATCCTCCCGCT
TCTCATCCACGCAGAGCAAAACCCTTCTGGACTTGATGAAGAGCAAGTAC
ACTCCGTTCCTGCCCGCTTCCTCCGGGGTGCAGAGCAAGCTGTCCTTCGG
CGGCAAGACTGTCACCTCCTTCGGGGGGGAGAACTCTAGCGACGACGATG
ACGACGACGATGATGATGATGAGGAGGAGGAGGACGACGAAACCGAGTCT
CAGTGATACTTGTTGCATGTTGTTGAGCGTTTTTGGCAATCAGAGCTGGC
CTTGTCGTCGACAGTAGATAGCATATTCTTCAGCACCAGAAGCCTTTCGA
AAAAGGAAAGCTTGAGACGGAACCGGGGGGACTGAGTTGCGTGTTGGGTC
CATGTTGTGACCTCAATGTGGTCAATCAAGCTTCGAGGAGGGTGTGGCGC
TTTTGGTCGTGTTGAAAATTTCTCTCTCTGCGGCTATATTCAGCAGTTTC
CACGAGGGTACGTCTTAAAGAGATGTTTTATCTTCTGTTGGGAGTGACGA
CGCTGGATTTGTTGCGCTACACTCATCATGTATTTCGTGTTTTCGTTAAG
TGGTTTGTAGCGAAATGGTATACATGCAGTGAACCAGCAGTTATGCCTCG
CCTAAACGGACACCAACATGGAAATCCCCCGGTTATGGACAACTTTTTTC
CACGGGCATGGTGGCTCGGAGAATGTACAACTTATGGAGGGGTATCAACC
TTAAGGACAATTCCCCGGCTCAAGGAGACTTTTTTTAGCAATGTACCAGG
CGTGTCCTTAACCGAGGTTTGACTGTATTCGCTAGAGTGTACTTGAAGCA
TGATGTTATTCGAGTTGTGGCACAAGCAACAACGTAGTTCTTGTCCCCAC
GAAACGTTAGTTCTGCCTTTGGGTATTTTTCCTCGGCGTCGCTGGTGCCA
TACGACAGGTTTTCCCTGATGTTTTTCGCAGGCAATGCAGAACCGACCGC
GGTTGGTTATCATATTGTTGGCTGTTGGAGCCGGCCTAGGTGTCAATGCC
GCGCGTTGATCGTGGACAACGATCAGTCTGTTTAATATAATAGCAGACGA
CACGTTCGATTCATGTTCAGGGGAAGGAACCTGACTGTTTACCAGACACG
AGCATAGTTTTTAAGGACGGAGGAGGAGTGAATGGAGATGTTTCCGGAGA
AGAATCAAGTGTCCCATTTACGGGCGATGAAACTTGTCGGGGTTTTCTTG
TGTGCGGCATGACGCTCTTGGTGTGGCGATGATGATGATGCAGCCTCTTT
CGGCTGTGTTTCTTTGGCAAAATGTTGAGCGGTAGGTTTTCGCGAGCACC
ATACCCTTTGCAGCCTCTTTCGGCTGTGTTTCTTTGGCAAAATGTTGAGC
GGTAGGTTTTCGCGAGCACCATACTTTTTTTGCCGCAACCTTTACTAGAC
TACGGCCTCCTTTTTCCGCACTCAATCCTCGGAGGCGATGTTGGTGCCAT
TTTTGCGGTCGATGGTTGGGCTACAGTCTACAATCAACCGAAGTAACAAC
GAGGAGCTAAATAGAAACAAAAACGAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1396:4156..9882+ >mRNA_E-siliculosus-1a_F_contig1396.2339.1 ID=mRNA_E-siliculosus-1a_F_contig1396.2339.1|Name=mRNA_E-siliculosus-1a_F_contig1396.2339.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1908bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1396:4156..9882+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCGAACGAAGTGCCCACGATATGGGCCTTGCCGATCTCCGAGAACT
AATGCTGGACCTCGCTGCCGCATCGCTAGACGAGGAGGTGATGGTCGAAC
GAAGTGCCCACGATATGGGCCTTGCCGATCTCCGAGAACTAATGCTGGAC
CTCGCTGCCGCATCGCTAGACGAGGAGGTGAACGGGTCCTGCGAGACCGA
GACGTGTCGAGCCCTGGTGGCCGTGGTGGATGCCATGCCGGCTCGAGAGT
ACGGCGACGCCTTCTCCTCGCTGGTGTCCGGCTTGTGCGACCCCTCAGAA
CGGGTCCTGCGAGACCGAGACGTGTCGAGCCCTGGTGGCCGTGGTGGATG
CCATGCCGGCTCGAGAGTACGGCGACGCCTTCTCCTCGCTGGTGTCCGGC
TTGTGCGACCCCTCAGCGCGCGGACTAGAATCTCGGATGACGACTTTCAC
GTGGCCGCTCCTCGCGAGGAACGTCCCGTTTAAGCGATCCTCCTCCTCTC
CGTCTCACGGTTCGAGCGGCCACGGCGTTGTCGTCGGGGGTGGGGAGGGG
GGAAACAACAACAACGTCACAATAGCGGCCGATGGCGTCGGCATCACCGT
TGCTGCGGCAGCTGCGACTTCAGCTGCGGTGCCATCACTGAGCCACGAGG
TCTGTCACCGGCTGCTGAAGGAGCGGTTCCTGAAGGACACGTCGTACGTG
GACGCGGAGGAATCGCCGGAAGGGCTCGGGCGTGCCCTCAAGGCGCTGGA
CGTGCTGCTGGAAAACGAGGACGACGTGCTCGAGCGCGCGGACTAGAATC
TCGGATGACGACTTTCACGTGGCCGCTCCTCGCGAGGAACGTCCCGTTTA
AGCGATCCTCCTCCTCTCCGTCTCACGGTTCGAGCGGCCACGGCGTTGTC
GTCGGGGGTGGGGAGGGGGGAAACAACAACAACGTCACAATAGCGGCCGA
TGGCGTCGGCATCACCGTTGCTGCGGCAGCTGCGACTTCAGCTGCGGTGC
CATCACTGAGCCACGAGGTCTGTCACCGGCTGCTGAAGGAGCGGTTCCTG
AAGGACACGTCGTACGTGGACGCGGAGGAATCGCCGGAAGGGCTCGGGCG
TGCCCTCAAGGCGCTGGACGTGCTGCTGGAAAACGAGGACGACGTGCTCG
AGTCTGAGACCCAGGAGGGCTACAAGCGGCAGTACGTTGTCGTGGCCCTC
GCCAACGAGATGGCGGCGGGATCGATGGCGGTGTCTCGGACCGTCAAGCC
TGACGGGGACGAGTGCAGGAAGATGGTCCGATTGTTGGAGGGCATCAACA
GGGAGCTCACCAGCGTCATGCAGAACAGCGTCCAGATGTCTGAGACCCAG
GAGGGCTACAAGCGGCAGTACGTTGTCGTGGCCCTCGCCAACGAGATGGC
GGCGGGATCGATGGCGGTGTCTCGGACCGTCAAGCCTGACGGGGACGAGT
GCAGGAAGATGGTCCGATTGTTGGAGGGCATCAACAGGGAGCTCACCAGC
GTCATGCAGAACAGCGTCCAGATGAGCAAAACCCTTCTGGACTTGATGAA
GAGCAAGTACACTCCGTTCCTGCCCGCTTCCTCCGGGGTGCAGAGCAAGC
TGTCCTTCGGCGGCAAGACTGTCACCTCCTTCGGGGGGGAGAACTCTAGC
GACGACGATGACGACGACGATGATGATGATGAGGAGGAGGAGGACGACGA
AACCGAGTCTCAGTGAAGCAAAACCCTTCTGGACTTGATGAAGAGCAAGT
ACACTCCGTTCCTGCCCGCTTCCTCCGGGGTGCAGAGCAAGCTGTCCTTC
GGCGGCAAGACTGTCACCTCCTTCGGGGGGGAGAACTCTAGCGACGACGA
TGACGACGACGATGATGATGATGAGGAGGAGGAGGACGACGAAACCGAGT
CTCAGTGA back to top
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