mRNA_E-siliculosus-1a_F_contig1394.2334.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1394.2334.1
Unique NamemRNA_E-siliculosus-1a_F_contig1394.2334.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2334.1 vs. uniprot
Match: A0A6H5KE80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE80_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 1.100e-130
Identity = 199/221 (90.05%), Postives = 199/221 (90.05%), Query Frame = 1 
Query:  292 MSRRGSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQRVSQSGLKFLLWLKIPSFVFCLCVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLPKREPLPPASGVDLNLDSSGASSSCC 954
            MSRRGSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQR                      VESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLPKREPLPPASGVDLNLDSSGASSSCC
Sbjct:    1 MSRRGSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQRE---------------------VESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLPKREPLPPASGVDLNLDSSGASSSCC 200
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2334.1 vs. uniprot
Match: D8LEW7_ECTSI (Rab22, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW7_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 4.060e-87
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 
Query:  292 MSRRGSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQR 693
            MSRRGSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQR
Sbjct:    1 MSRRGSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQR 134
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2334.1 vs. uniprot
Match: A0A7S2SUM8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM8_9STRA)

HSP 1 Score: 241 bits (615), Expect = 2.330e-76
Identity = 130/215 (60.47%), Postives = 158/215 (73.49%), Query Frame = 1 
Query:  313 DSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQRVSQSGLKFLLWLKIPSFVFCLCVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLPKREPLPPASGVDLNLDSS-GASSSCC 954
            D R+REVKVVLLGDTGVGKSSLV RF+TN FK Y ESTIGASFMSK+IMVDGSP+KFQIWDTAGQEKYHSLAPMYY+GA AAIVVYDITK  +F+TLK+W+ EL++QGP++I IAVAGNK DLES+R                      V+++ AQ+YA  IGA F+ETSAK   +V ++F  +SK+LP++E         LNL +  G+S  CC
Sbjct:    6 DQRAREVKVVLLGDTGVGKSSLVLRFITNEFKQYQESTIGASFMSKLIMVDGSPIKFQIWDTAGQEKYHSLAPMYYKGAAAAIVVYDITKESTFQTLKDWVAELRSQGPENIVIAVAGNKSDLESERE---------------------VDTATAQSYAHSIGASFLETSAKTKANVDEIFSNISKQLPEQERAGQYHNK-LNLKAGKGSSGGCC 198
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2334.1 vs. uniprot
Match: F0WNT1_9STRA (Rab5 family GTPase putative n=3 Tax=Albugo TaxID=65356 RepID=F0WNT1_9STRA)

HSP 1 Score: 240 bits (612), Expect = 6.610e-76
Identity = 122/187 (65.24%), Postives = 146/187 (78.07%), Query Frame = 1 
Query:  319 RSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQRVSQSGLKFLLWLKIPSFVFCLCVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLP 879
            ++REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKMIMV+ +P+K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  S  TLK W+ EL+  GP++I IA+AGNK DLE +R                      V S+ A+AYADEIGA+F+ETSAK+ T+V D+F+ +SK+LP
Sbjct:    7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVENTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLATLKNWVKELKQLGPENIVIAIAGNKSDLEDKRE---------------------VPSAQAKAYADEIGALFIETSAKEDTNVSDLFISISKQLP 172
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2334.1 vs. uniprot
Match: D0N0I0_PHYIT (Rab5 family GTPase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N0I0_PHYIT)

HSP 1 Score: 235 bits (599), Expect = 6.540e-74
Identity = 128/218 (58.72%), Postives = 155/218 (71.10%), Query Frame = 1 
Query:  313 DSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQRVSQSGLKFLLWLKIPSFVFCLCVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLP----KREPLPPASGVDLNLDSSGASSSCC 954
            +S++REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKMI+V+ +P+K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  S  TLK W+ EL+  GP +I IA+AGNK DLE +R                      V +S A+AYA EIGA+F+ETSAK+ T+V D+F+++S+ LP    +   LP    VD        SS CC
Sbjct:    6 NSKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIVVNDTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKRE---------------------VPASQARAYAGEIGALFIETSAKEDTNVSDLFIQISQALPTASAESNALPEI--VDPYGGGKKKSSGCC 200
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2334.1 vs. uniprot
Match: K3X978_GLOUD (Uncharacterized protein n=22 Tax=Oomycota TaxID=4762 RepID=K3X978_GLOUD)

HSP 1 Score: 233 bits (593), Expect = 5.110e-73
Identity = 119/188 (63.30%), Postives = 145/188 (77.13%), Query Frame = 1 
Query:  316 SRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQRVSQSGLKFLLWLKIPSFVFCLCVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLP 879
            S++REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKMI+V+ +P+K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  S  TLK W+ EL+  GP +I IA+AGNK DLE +R                      V +S A+AYA+EIGA+F+ETSAK+  +V D+F+++S+ LP
Sbjct:    6 SKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIVVNDTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKRE---------------------VPASQARAYAEEIGALFIETSAKEDRNVSDLFIQISQALP 172
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2334.1 vs. uniprot
Match: A0A067CI89_SAPPC (Uncharacterized protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CI89_SAPPC)

HSP 1 Score: 227 bits (578), Expect = 8.840e-71
Identity = 117/187 (62.57%), Postives = 141/187 (75.40%), Query Frame = 1 
Query:  319 RSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQRVSQSGLKFLLWLKIPSFVFCLCVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLP 879
            ++REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKM++V    +K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  S +TLK W+ EL+  GP +I IA+AGNK DL+ +R                      V S  A+AYADEIGA+F+ETSAK+ T+V D+F  +S++LP
Sbjct:    6 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLQTLKNWVKELKQLGPDNIVIAIAGNKSDLKDKRE---------------------VSSETAKAYADEIGAVFIETSAKEDTNVSDLFKTISQQLP 171
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2334.1 vs. uniprot
Match: A0A7S1CIP5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIP5_9STRA)

HSP 1 Score: 227 bits (578), Expect = 1.350e-69
Identity = 117/190 (61.58%), Postives = 142/190 (74.74%), Query Frame = 1 
Query:  310 MDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQRVSQSGLKFLLWLKIPSFVFCLCVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLP 879
            M + +REVKVVLLGDTGVGKSSLV RFVTNNFKPYSESTIGASFM+KM+++D +P+K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  SF TLK W+ EL+  GP+DI IA+AGNK DL  QR                      VE   A+ YA  IGA+++ETSAK  ++V+ +FV+++ RLP
Sbjct:   85 MAAEAREVKVVLLGDTGVGKSSLVLRFVTNNFKPYSESTIGASFMAKMMIIDSTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRAASFATLKNWVRELKQLGPEDIVIAIAGNKSDLAPQRE---------------------VEEEDAREYARSIGALYIETSAKTDSNVKQLFVDIAMRLP 253
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2334.1 vs. uniprot
Match: A0A3R7AA57_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AA57_9STRA)

HSP 1 Score: 226 bits (575), Expect = 8.720e-68
Identity = 120/200 (60.00%), Postives = 148/200 (74.00%), Query Frame = 1 
Query:  280 ISSRMSRRGSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQRVSQSGLKFLLWLKIPSFVFCLCVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLP 879
            +++ MS  G+   ++REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKM++V    +K+QIWDTAGQEKYHSLAPMYYRGA AAIVVYDIT+  S  TLK W+ EL+  GP +I IA+AGNK DL+ +R                      V S+ A+AYADEIGA+F+ETSAK+ T+V D+F  +S++LP
Sbjct:  188 LATNMSADGT---KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLVTLKNWVKELKQLGPDNIVIAIAGNKSDLDDKRE---------------------VSSATAKAYADEIGAVFIETSAKEDTNVLDLFKTISQQLP 363
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1394.2334.1 vs. uniprot
Match: F0Y0I1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0I1_AURAN)

HSP 1 Score: 219 bits (558), Expect = 9.590e-68
Identity = 117/211 (55.45%), Postives = 141/211 (66.82%), Query Frame = 1 
Query:  319 RSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQRVSQSGLKFLLWLKIPSFVFCLCVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLPKREPLPPASGVDLNLDSSGASSSC 951
            R+RE KVVLLGDTGVGKSSL  R+VTN FKPYSESTIGASFMSKMI+VDG+P K QIWDTAGQEKYHSLAPMYYRGA AAI+V+DITK  S   LK W+ ELQ QGP+ +A+A+AGNK DL  +R                      V +  A+A+A +IGA++ ETSAKD T+V  +F +L +R P           DL  D++     C
Sbjct:    7 RTRECKVVLLGDTGVGKSSLAQRYVTNTFKPYSESTIGASFMSKMILVDGAPCKCQIWDTAGQEKYHSLAPMYYRGAAAAILVFDITKPASLDKLKAWVRELQTQGPERLALAIAGNKADLADRRA---------------------VPADDAKAFAADIGALYCETSAKDDTNVSQLFADLVRRAPAGGAARTDDAFDLGHDAAPRRGCC 196
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1394.2334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE80_9PHAE1.100e-13090.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEW7_ECTSI4.060e-87100.00Rab22, RAB family GTPase n=1 Tax=Ectocarpus silicu... [more]
A0A7S2SUM8_9STRA2.330e-7660.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0WNT1_9STRA6.610e-7665.24Rab5 family GTPase putative n=3 Tax=Albugo TaxID=6... [more]
D0N0I0_PHYIT6.540e-7458.72Rab5 family GTPase, putative n=2 Tax=Phytophthora ... [more]
K3X978_GLOUD5.110e-7363.30Uncharacterized protein n=22 Tax=Oomycota TaxID=47... [more]
A0A067CI89_SAPPC8.840e-7162.57Uncharacterized protein n=7 Tax=Saprolegniaceae Ta... [more]
A0A7S1CIP5_9STRA1.350e-6961.58Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A3R7AA57_9STRA8.720e-6860.00Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
F0Y0I1_AURAN9.590e-6855.45Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1394contigE-siliculosus-1a_F_contig1394:23385..27781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size957
Model size959
Exons5
Ec32 orthologEc-21_005820.1
Ec32 ortholog descriptionRab22, RAB family GTPase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04031,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG0092@1,KOG0092@2759
EggNOG free text desc.GTPase activity
GOsGO:0000139,GO:0000166,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005886,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006897,GO:0006898,GO:0006955,GO:0006996,GO:0007032,GO:0008104,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010256,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0030139,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031623,GO:0031901,GO:0031982,GO:0031984,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032588,GO:0032868,GO:0032869,GO:0032870,GO:0032940,GO:0033036,GO:0034613,GO:0035639,GO:0036094,GO:0036230,GO:0042119,GO:0042221,GO:0042886,GO:0043001,GO:0043112,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0043434,GO:0044237,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0045335,GO:0046903,GO:0048193,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051716,GO:0061951,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090066,GO:0090150,GO:0090382,GO:0097159,GO:0097367,GO:0097494,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0098876,GO:0099503,GO:1901265,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990778
KEGG Pathwayko04144,map04144
KEGG koko:K07891
Preferred nameRAB31
Seed eggNOG ortholog2880.D8LEW7
Seed ortholog evalue1.6e-68
Seed ortholog score266.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1394.2334.1prot_E-siliculosus-1a_F_contig1394.2334.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1394 23385..27781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927906.7138727-CDS-E-siliculosus-1a_F_contig1394:23384..235821622927906.7138727-CDS-E-siliculosus-1a_F_contig1394:23384..23582Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 23385..23582 -
1696318732.0992153-CDS-E-siliculosus-1a_F_contig1394:23384..235821696318732.0992153-CDS-E-siliculosus-1a_F_contig1394:23384..23582Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 23385..23582 -
1622927906.7247148-CDS-E-siliculosus-1a_F_contig1394:23883..241561622927906.7247148-CDS-E-siliculosus-1a_F_contig1394:23883..24156Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 23884..24156 -
1696318732.1120791-CDS-E-siliculosus-1a_F_contig1394:23883..241561696318732.1120791-CDS-E-siliculosus-1a_F_contig1394:23883..24156Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 23884..24156 -
1622927906.734731-CDS-E-siliculosus-1a_F_contig1394:24516..245711622927906.734731-CDS-E-siliculosus-1a_F_contig1394:24516..24571Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 24517..24571 -
1696318732.1214042-CDS-E-siliculosus-1a_F_contig1394:24516..245711696318732.1214042-CDS-E-siliculosus-1a_F_contig1394:24516..24571Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 24517..24571 -
1622927906.744695-CDS-E-siliculosus-1a_F_contig1394:25110..251831622927906.744695-CDS-E-siliculosus-1a_F_contig1394:25110..25183Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 25111..25183 -
1696318732.133125-CDS-E-siliculosus-1a_F_contig1394:25110..251831696318732.133125-CDS-E-siliculosus-1a_F_contig1394:25110..25183Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 25111..25183 -
1622927906.756425-CDS-E-siliculosus-1a_F_contig1394:27423..277811622927906.756425-CDS-E-siliculosus-1a_F_contig1394:27423..27781Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 27424..27781 -
1696318732.14872-CDS-E-siliculosus-1a_F_contig1394:27423..277811696318732.14872-CDS-E-siliculosus-1a_F_contig1394:27423..27781Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 27424..27781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1394.2334.1

>prot_E-siliculosus-1a_F_contig1394.2334.1 ID=prot_E-siliculosus-1a_F_contig1394.2334.1|Name=mRNA_E-siliculosus-1a_F_contig1394.2334.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=319bp
TTTAARDSNNSGAKDYHRPGYIPAPATAVLTEVSRDFGRQRGHSGIRTQF
SKIVALLYLVLQPGAAAGKRARDPKSLRPLLVPRASEREREREISSRMSR
RGSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSK
MIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRT
LKEWINELQAQGPQDIAIAVAGNKRDLESQRVSQSGLKFLLWLKIPSFVF
CLCVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLPKREPLPP
ASGVDLNLDSSGASSSCC*
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mRNA from alignment at E-siliculosus-1a_F_contig1394:23385..27781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1394.2334.1 ID=mRNA_E-siliculosus-1a_F_contig1394.2334.1|Name=mRNA_E-siliculosus-1a_F_contig1394.2334.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4397bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1394:23385..27781- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCACTACCGCAGCACGAGATAGCAACAACTCTGGCGCAAAGGACTACCA
TCGTCCTGGTTATATCCCTGCTCCTGCTACCGCTGTACTGACAGAGGTTT
CTCGAGACTTCGGCAGACAACGCGGTCATTCAGGAATTCGAACGCAGTTT
TCGAAAATTGTAGCACTCCTTTATTTGGTTCTCCAGCCGGGAGCAGCAGC
GGGAAAGAGAGCAAGGGACCCAAAAAGTCTTCGCCCATTATTGGTGCCGA
GAGCGAGCGAGCGAGAGAGAGAGAGAGAGATTTCCAGCAGGATGAGTCGA
CGGGGATCCATGGACTCGAGATCACGAGAAGTGAAGGTCGTGCTTCTAGG
AGATACTGGTGAGCCCCTCCTGAATTGGCGCTCCCCGGTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCACCTGCGTAAACCCAGTCCCAATAATACA
TGACCCCCAGCCTCCGGCGGCAACCATGGTCGGTCGCCCTCTCTCATGTT
ACAGGCTATGACTTCTTACAATGGTGCCGTGCACGACACGCGTCATATCA
TGACGTGTCACATCACAGCTTCTGCGTGCTTCATGATCTCGCCACAGCGT
GTAAACAAGAACGGTTTAACGCTTGAAGCCTCCATGGGCGCCAATCTCAT
TTGACACCCGTATGATAAAAGTATTATGATACAACTTACATACAGCAGTC
CGAGGCATCAAGCCTAGCACTTGTTCCGCCTGCTACTGTAGATATGCATA
TGCATCCATATGCCGAGGAACAGCAGGGTGTGGTTGTGGTGAGATATGCC
AATTTTCGTGCCATGATGGTAGTGAGCACTAACGGGCACTGCGGGTTTTT
AGACCAACACGGATTATTTTTTCGCATGTACAAGTTGTGGTGTTTCCCTC
GGTACTATTATATACCCGTCTGTAATCCCGCTAAATAGTAGGTAGATGTC
CACCTGGCGCAACCCTGTTCATCACAGACTGCTTGTGGTTCTGTATCTCT
GTGAGTTTTGTATATTTTCTAAAAACAGCAGCCTACGCTTGGAAATGTTT
CGCCATGTTTTGAAGCTCCTGCTTGCACGCGCAGCAGCGCATGCGGCCCG
GTGTTTTGGAAGTGTTTTTGAAGGAGAGGTCCTGTTGTCGGCGTCCAAGT
CTGTTTTGTATCGAAGCCATGTTATGTCACGTGTGCAGCCTTCCTATGAG
AAACAGAGGCGTCGATGTTTGTTTGCGTTTCAGCATTGCAACCTCCGCAT
ACTACAAAGGTCTCGTCGCGATTTATTCCGCCACGCCACTCCGACGGCCA
AATACTGGCGTCAAAGAACTGGAAAGACCGTGGTTTGCACGCTTGATTCT
CGATAAACAATTTCCACAAGGCCGTCTCCACATTTTGAGATAAATTCACC
AAATTCCGGTGGCTGCTAACGACCGTATCGGTCCAACTGACGACAGGTAC
ATTGTCGAAGTATGGTACATGCCTGGTCTACAGCAGCAAATGTTGGACCG
CGTTCAAACCTGCCGCCGTTCATGGCTACTTGTGTGTCATAGGGCCGCGT
GTGCTTGACACAGGGCGGCGAGCTTGGCGACAGCAAGTAGCATTATATGT
GGCGTAAGAGCTGGTCGTCCCTCGACAAAAGGACTATCATCGCCGTTGCT
ATTTTGGGAGTTTGGGTTAAAGCTGTGGCAAAATTTTACCACAAGGATCG
ATACTTTTCATACACCACCGTGCTTGGGTTACGAAGCCTCGGTCCGGAAC
CGCTTTCGGAACCGCTTGGCAGCCTAAAGTGCCCCTGAGGCTGCCCTTCC
TGTTTTTCTATCACCCAGAAACTTACGGCTTTGGCTGACATCGCCGCATC
AAACGGACCAGACTGACCAAGTTCCAACTTGCGTTTGACGACATAACCAG
ATTTTTTCACAACCCCCCCGGAGTACATCCAATTGGGCGACCGGTTCTTG
AACAAGCCGCTGTTCTGAGGGAGCTTTGCCCGGCCGGTGGTCTCGTCTCA
TTGTCTGCATACTTCGATCTTGGCTCGCAACCCAACCTGTCCAAACAGGA
CGCGTTTGGTGCGAATACCGTGCAGATTCAAGTTCACACAAATCCTTGCG
TACAGGTATCTACCGCTGTTTTCTTTTTTCTTTGAGTATGGCTGATTTGT
CATGCCCATCCGAGCATTTGCTACATGTCTGTGAGACTACTATGCTGCTA
TGGACCATCTTGTCATTGCCCGTTAGGGGCGGAGGATTACCGACAGCAGG
TGTTCATACTCACGACAGAAGCTGTTCGAAAGTCAAAACCTCCGCTTTTT
TTGCGGGATGCCATCTCGTTTTTATGTGCAAATTCTGTCCAGCTCGATCT
CTAACAAAGGTGGGGGGTTGTGGTTATAACCGGGGGGGGGGGGGGATCTG
CAATGCTGTCCCTGGCGAATCGCAAGAAGGCCCTCAAGTTGCTGTGTTTC
GGATGCTGTTTGATGCAGCTACGTCTGTATGCGGGAACGGTTTTAGTCCA
ACAACAACAACAACAACCTCTCTTGGCAACGATGCCTAACACGGCGCATG
TCCCTTCCGCGCATGTCTTTGGATGTTGGCCTTGTCTTGGGCGAACAGGA
GTGGGGAAGTCCAGCCTGGTGCATAGGTTCGTGACCAACAACTTCAAGCC
ATACAGCGAGAGCACGATCGGGTGAGACAAACATATTTGCTCTCGGGGGC
GTGTTCATTTTATCCAGATTTCAGCATGTTTTGGCGCATGCCTTATGGCA
ATATTGCCTTATTAGCCGATAAACCGTGGGTGACTTAGTATTCTGTGTGA
TAACGAAAGGGAACAGCAGTTGTTGACTACGGAATTGTAGGCTGGGTAAC
CATGTTAGTATTCTGTGTGATATCAGAAGGGAATAACAGTTGTTGACTAC
GGGATTTCCCAGGGACCCTTCTCGGCCCGGACCCCCTGGGTCTGCACGTG
TTGTTGTTGGTGTCGCGTTTGCTGCTGTCTTCCTAGGCTACCAGCGTTGG
CAATCCCGCGCCGTGATATCGTATGCCGTGCACTATTCCACCACGCAACA
GACGACCGACGTATCCACAGGCTCATGGGCGTATGCGCCCGCTATAGAAA
CAGAGTGCACCCTGCTGTTGCTCGCTGCGCTGTGTAGTTTCAAGCCCATC
GCGTAGTGTCAAGCCCATCGTGTTGTCGTGTACGTTTCGTTTTGTCTTGC
GACGCAACAGGGCTTCCTTCATGTCGAAGATGATCATGGTGGACGGTTCG
CCGATGAAATTTCAGGTGAGGAAGTTCTCCCCCCTCCCGGTCCGGTGGGA
AAATTAAAAGGAAGGAAGATACAGGGAGATGTTTGAGGCAGGAATAGCCA
GGAGAAGACGGTAGCTGTACTGGGGCATTGGGGCATAGGGGTTGAGAAGG
CGGGGAAGTGATATCGTTAGGATAGACAGTCTACGGAACACATTGTTGAG
CCGCCTTTGGCAAAGTAGGAAGTAATGATTGGCCACCGGTTATATAGATC
AGTCCTGTGGGAACACTGCTCCGTCCTCTCGGGGACGCGTGGTCGACGGT
CTTAACACCTAAGGCATGCAAAACATAAGAGTACGCCCCCCCCCACCCAC
CTACGGCCTCCGCAACGCTGCGTAGATCTGGGACACCGCGGGGCAGGAGA
AGTACCACAGCCTGGCCCCAATGTACTACCGTGGGGCGGGCGCCGCTATC
GTGGTGTACGACATCACAAAGATGCACTCCTTCCGTACCTTGAAAGAGTG
GATAAACGAGCTGCAGGCACAGGGGCCGCAAGACATCGCGATCGCGGTCG
CCGGGAACAAGCGCGACTTGGAATCGCAGAGAGTGAGTCAGAGTGGACTG
AAGTTTTTGCTTTGGCTCAAGATCCCGTCATTCGTTTTCTGTCTTTGCGT
GCTCTATATGTGGCGCGCGTGCTTCGTGGTTTCCGGGCGCCTGGTTGCGC
ACACGTTTTATGCCGGGTTACCAGATGTAGAGAATTGGTGCCCCAACCGG
ACCAGCCGCGGACGGCAAAGCATTCGAACAATGCATGGTTGTTTATCGGC
TTACTTTAAGACGCCTGCTTGTTCCATCTGTGATGCTTGGTTACCCCCCC
CCGTGCTCATTCTGTTTCTCCCCTGTCTAACCCCCGTCCGTCCGTTTTTT
ACTCCCTACTCTCTCCTCTCGCCGCCACGCGTGTCGTCGTCCGTAGGAGG
TGGAGTCCTCGATGGCCCAGGCGTACGCGGACGAGATCGGTGCGATGTTC
GTGGAGACGTCTGCGAAGGACGCCACTCACGTGCAGGACATGTTCGTCGA
GCTCAGCAAACGCCTGCCGAAGCGGGAACCCTTGCCGCCGGCCTCGGGCG
TGGATCTCAATCTCGACTCCTCTGGGGCATCCTCCTCCTGCTGCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1394:23385..27781-

>mRNA_E-siliculosus-1a_F_contig1394.2334.1 ID=mRNA_E-siliculosus-1a_F_contig1394.2334.1|Name=mRNA_E-siliculosus-1a_F_contig1394.2334.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1914bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1394:23385..27781- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCACTACCGCAGCACGAGATAGCAACAACTCTGGCGCAAAGGACTACCA
TCGTCCTGGTTATATCCCTGCTCCTGCTACCGCTGTACTGACAGAGGTTT
CTCGAGACTTCGGCAGACAACGCGGTCATTCAGGAATTCGAACGCAGTTT
TCGAAAATTGTAGCACTCCTTTATTTGGTTCTCCAGCCGGGAGCAGCAGC
GGGAAAGAGAGCAAGGGACCCAAAAAGTCTTCGCCCATTATTGGTGCCGA
GAGCGAGCGAGCGAGAGAGAGAGAGAGAGATTTCCAGCAGGATGAGTCGA
CGGGGATCCATGGACTCGAGATCACGAGAAGTGAAGGTCGTGCTTCTAGG
AGATACTGACCACTACCGCAGCACGAGATAGCAACAACTCTGGCGCAAAG
GACTACCATCGTCCTGGTTATATCCCTGCTCCTGCTACCGCTGTACTGAC
AGAGGTTTCTCGAGACTTCGGCAGACAACGCGGTCATTCAGGAATTCGAA
CGCAGTTTTCGAAAATTGTAGCACTCCTTTATTTGGTTCTCCAGCCGGGA
GCAGCAGCGGGAAAGAGAGCAAGGGACCCAAAAAGTCTTCGCCCATTATT
GGTGCCGAGAGCGAGCGAGCGAGAGAGAGAGAGAGAGATTTCCAGCAGGA
TGAGTCGACGGGGATCCATGGACTCGAGATCACGAGAAGTGAAGGTCGTG
CTTCTAGGAGATACTGGAGTGGGGAAGTCCAGCCTGGTGCATAGGTTCGT
GACCAACAACTTCAAGCCATACAGCGAGAGCACGATCGGGAGTGGGGAAG
TCCAGCCTGGTGCATAGGTTCGTGACCAACAACTTCAAGCCATACAGCGA
GAGCACGATCGGGGCTTCCTTCATGTCGAAGATGATCATGGTGGACGGTT
CGCCGATGAAATTTCAGGGCTTCCTTCATGTCGAAGATGATCATGGTGGA
CGGTTCGCCGATGAAATTTCAGATCTGGGACACCGCGGGGCAGGAGAAGT
ACCACAGCCTGGCCCCAATGTACTACCGTGGGGCGGGCGCCGCTATCGTG
GTGTACGACATCACAAAGATGCACTCCTTCCGTACCTTGAAAGAGTGGAT
AAACGAGCTGCAGGCACAGGGGCCGCAAGACATCGCGATCGCGGTCGCCG
GGAACAAGCGCGACTTGGAATCGCAGAGAGTGAGTCAGAGTGGACTGAAG
TTTTTGCTTTGGCTCAAGATCCCGTCATTCGTTTTCTGTCTTTGCATCTG
GGACACCGCGGGGCAGGAGAAGTACCACAGCCTGGCCCCAATGTACTACC
GTGGGGCGGGCGCCGCTATCGTGGTGTACGACATCACAAAGATGCACTCC
TTCCGTACCTTGAAAGAGTGGATAAACGAGCTGCAGGCACAGGGGCCGCA
AGACATCGCGATCGCGGTCGCCGGGAACAAGCGCGACTTGGAATCGCAGA
GAGTGAGTCAGAGTGGACTGAAGTTTTTGCTTTGGCTCAAGATCCCGTCA
TTCGTTTTCTGTCTTTGCGTGGAGTCCTCGATGGCCCAGGCGTACGCGGA
CGAGATCGGTGCGATGTTCGTGGAGACGTCTGCGAAGGACGCCACTCACG
TGCAGGACATGTTCGTCGAGCTCAGCAAACGCCTGCCGAAGCGGGAACCC
TTGCCGCCGGCCTCGGGCGTGGATCTCAATCTCGACTCCTCTGGGGCATC
CTCCTCCTGCTGCTGAGTGGAGTCCTCGATGGCCCAGGCGTACGCGGACG
AGATCGGTGCGATGTTCGTGGAGACGTCTGCGAAGGACGCCACTCACGTG
CAGGACATGTTCGTCGAGCTCAGCAAACGCCTGCCGAAGCGGGAACCCTT
GCCGCCGGCCTCGGGCGTGGATCTCAATCTCGACTCCTCTGGGGCATCCT
CCTCCTGCTGCTGA
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