mRNA_E-siliculosus-1a_F_contig13809.2267.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13809.2267.1
Unique NamemRNA_E-siliculosus-1a_F_contig13809.2267.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13809.2267.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.820e-44
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 MDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTPERIDDD 261
            MDWFVEEVADYEPN LDARKTTPAVQAGRKLG RHLQ LLKAVGRDCLRGTNTPDEKVKVLVGIILPEAER+VGSTSHGT ER++ D
Sbjct:  857 MDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHGTRERLNHD 943
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BLAST of mRNA_E-siliculosus-1a_F_contig13809.2267.1 vs. uniprot
Match: A0A6H5KC16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 8.030e-44
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTPERIDDD 261
            MDWFVEEVADYEPN LD RKTTPAVQAGRKLGKRHLQI+LKAVGRDCLRGTNT DEKVKVLVGI+LPEA RKVG TSHGT ER + D
Sbjct:   62 MDWFVEEVADYEPNNLDTRKTTPAVQAGRKLGKRHLQIILKAVGRDCLRGTNTADEKVKVLVGIVLPEAGRKVGLTSHGTQERANHD 148
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BLAST of mRNA_E-siliculosus-1a_F_contig13809.2267.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.060e-43
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 MDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTPERIDDD 261
            MDWFVEEVADYEPNKLDARKTT AVQAGRKLG RHLQ LLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGT ER + D
Sbjct:  672 MDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTQERTNHD 758
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BLAST of mRNA_E-siliculosus-1a_F_contig13809.2267.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.120e-41
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:    1 MDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTPERIDDD 261
            MDWFVEEVADYEPN +DARKTT AVQAGRKLGKRHLQ LLKAVGRDCLRGTNTPDEKVKVLVGIILPEAER+VGSTSH T ER + D
Sbjct:  645 MDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHVTRERTNHD 731
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BLAST of mRNA_E-siliculosus-1a_F_contig13809.2267.1 vs. uniprot
Match: D7FHJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ4_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 4.300e-16
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 MDWFVEEVAD-YEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGRDCLRGTNTPDEKVKVLVGIILPEA 207
            MDWFV+ +++ YEP        T  ++AG++LG+RHL++LL AVGR CL GTN P EKV  LV +ILPEA
Sbjct:    1 MDWFVDWISEHYEPGNCGTTTETRELKAGKRLGRRHLRMLLTAVGRGCLEGTNNPREKVDALVQVILPEA 70
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BLAST of mRNA_E-siliculosus-1a_F_contig13809.2267.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.360e-15
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 MDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGST 228
            M+WF +EV+++EP    A + TP  QAG +LGK+HLQ LL AVG  CL G N  +EKV++LV  + PE E    ST
Sbjct:  976 MEWFADEVSNFEPQHRHATRMTPEEQAGSRLGKKHLQTLLLAVGTGCLEGANNIEEKVELLVRTVFPEDEGNAVST 1051
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BLAST of mRNA_E-siliculosus-1a_F_contig13809.2267.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 6.260e-15
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 MDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGST 228
            M+WF +EVA+ EP    A +TTP  QAGR+LGK+HLQ LL AVG   L G  + +EKV++LV  +LPE E    ST
Sbjct:  949 MEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVGNGRLEGAKSIEEKVELLVRTVLPEDEGNAVST 1024
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BLAST of mRNA_E-siliculosus-1a_F_contig13809.2267.1 vs. uniprot
Match: D7G8A7_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.520e-13
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 MDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTPERIDDDP 264
            M+WF EE A   PN  +  K+TP  + GR+LGKRH++++L AV R CL+GT+  +EKV+ L+ +++PEA  K  S S+      +  P
Sbjct:  483 MEWFAEEAASCVPN--NTGKSTPEEKTGRRLGKRHIRMILAAVERGCLQGTHAIEEKVEQLLKVVVPEAGAKPVSNSNAQERSFEQHP 568
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BLAST of mRNA_E-siliculosus-1a_F_contig13809.2267.1 vs. uniprot
Match: A0A6H5JH23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH23_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.820e-8
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:    1 MDWFVEEVADYEPNKLDARKTTPAVQ 78
            MDWFVEEVADYEPN LDARKTTPAVQ
Sbjct:   61 MDWFVEEVADYEPNNLDARKTTPAVQ 86
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13809.2267.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.400e-7
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:    1 MDWFVEEVADYEPNKLDARKTTPAVQ 78
            MDWFVEEVADYEPN LDARKTTPAVQ
Sbjct:  171 MDWFVEEVADYEPNNLDARKTTPAVQ 196
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13809.2267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FUA0_ECTSI5.820e-4490.80Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5KC16_9PHAE8.030e-4487.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA1_ECTSI1.060e-4391.95Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FUA2_ECTSI1.120e-4188.51Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FHJ4_ECTSI4.300e-1654.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBQ0_9PHAE3.360e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS8_ECTSI6.260e-1552.63Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7G8A7_ECTSI3.520e-1342.05Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5JH23_9PHAE1.820e-896.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSF6_9PHAE1.400e-796.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13809contigE-siliculosus-1a_F_contig13809:23..1219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size264
Model size264
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.7.11.1
Ec32 orthologEc-25_002150.1
Ec32 ortholog descriptionhypothetical protein
EggNOG OGs2QQYD@2759,COG4886@1
EggNOG free text desc.protein serine/threonine kinase activity
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
KEGG ModuleM00686
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG koko:K04730,ko:K04733
Seed eggNOG ortholog2880.D7FUA0
Seed ortholog evalue1.1e-37
Seed ortholog score162.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13809.2267.1prot_E-siliculosus-1a_F_contig13809.2267.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13809 23..1219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927894.530717-CDS-E-siliculosus-1a_F_contig13809:22..1151622927894.530717-CDS-E-siliculosus-1a_F_contig13809:22..115Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13809 23..115 -
1696318726.8670435-CDS-E-siliculosus-1a_F_contig13809:22..1151696318726.8670435-CDS-E-siliculosus-1a_F_contig13809:22..115Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13809 23..115 -
1622927894.5449252-CDS-E-siliculosus-1a_F_contig13809:886..9791622927894.5449252-CDS-E-siliculosus-1a_F_contig13809:886..979Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13809 887..979 -
1696318726.8808994-CDS-E-siliculosus-1a_F_contig13809:886..9791696318726.8808994-CDS-E-siliculosus-1a_F_contig13809:886..979Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13809 887..979 -
1622927894.5617504-CDS-E-siliculosus-1a_F_contig13809:1141..12191622927894.5617504-CDS-E-siliculosus-1a_F_contig13809:1141..1219Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13809 1142..1219 -
1696318726.889753-CDS-E-siliculosus-1a_F_contig13809:1141..12191696318726.889753-CDS-E-siliculosus-1a_F_contig13809:1141..1219Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13809 1142..1219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13809.2267.1

>prot_E-siliculosus-1a_F_contig13809.2267.1 ID=prot_E-siliculosus-1a_F_contig13809.2267.1|Name=mRNA_E-siliculosus-1a_F_contig13809.2267.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=88bp
MDWFVEEVADYEPNKLDARKTTPAVQAGRKLGKRHLQILLKAVGRDCLRG
TNTPDEKVKVLVGIILPEAERKVGSTSHGTPERIDDDP
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mRNA from alignment at E-siliculosus-1a_F_contig13809:23..1219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13809.2267.1 ID=mRNA_E-siliculosus-1a_F_contig13809.2267.1|Name=mRNA_E-siliculosus-1a_F_contig13809.2267.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1197bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13809:23..1219- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACTGGTTTGTCGAAGAAGTGGCGGACTACGAGCCGAACAAACTCGA
TGCAAGGAAAACAACTCCTGCCGTACAGGTATACGAAGGCCTATCTGAGC
GCTCTATTGCCGTCGAACTCTTCGCGTCTCCAGTCCTGCGGAAGGCAAAT
GATCACATCGATAGCAGCCATCGTGGACGCCGTATTTTTGCCAGCTACGA
GATCCCCACCGCTCTTTGTTTTTGCCGCCGTCGTTTCCAGGCTGGGAGGA
AGCTTGGGAAAAGGCACCTCCAGATCCTTCTAAAGGCGGTTGGGCGGGAT
TGCCTCCGCGGCACAAACACTCCTGACGAGAAGGTAAAGTACAATTAAAT
CTGGTTAGACGCTATTCTACAGTCAGGAAGAACGGGAATCCGATTTGAAA
AAGGGATGGGTAACTATCTTGGCGCGTGCTTGGCGCTATGCATGCGAGGA
ATCCAAACAACGCCTGTATCCGACTTTTGGTCTTTTCCTCGGTGCCGTGA
GGAACGTTGTTGGTACAGGCCGTCCATGCGTGTCTGGTGTTTGTTCGTCG
GCCGTGTTGAGTTCCTAATTTTTTGTGTAGAATCCGTACGCGTTTTCAAT
TGTAAGCGACGTTCGCCACCTTTTCCGGGTCAAACTAAGTGGTCCGGTTT
CACGAAAACCAGCGCAGTTCCAGCAACAAGCAAGTAACCTAATTTTTTGT
GTAGAATCCGTACGCGTTTTCAATTGTAAGCGACGTTCGCCACCTTTTCC
GGGTCAAACTAAGTGGTCCGGTTTCACGAAAACCAGCGCAGTTCCAGCAA
CAAGCAAGTAAAACGTTGGTCGATTCTCCTCTTGTCGTTGGGGGGTCGTT
CACTTTCACCGCATTCGCGATACATAAAGCAATTTCCACCCTTGTGCACA
TGCTTGGGAGAGATTCCCTACTTGAACCAACCTAGATTACTTCCTTCGAA
GGGACAAGGATTTTGGCGACTAGCTTGTGGTACAGTCGGTGTCTCCAGCA
GATGCTTGGACTCGCTCGTAGCACGTCACACACTCCCAGTATTTTTTCAC
GGGAGTTAAATCTAATGGAATTGAACGCGTTGATGAAACATCATGAATCC
TCAGGTGAAAGTTCTTGTCGGGATTATACTCCCAGAGGCCGAGCGGAAAG
TTGGTTCGACATCTCACGGCACGCCGGAGCGAATCGATGACGACCCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13809:23..1219-

>mRNA_E-siliculosus-1a_F_contig13809.2267.1 ID=mRNA_E-siliculosus-1a_F_contig13809.2267.1|Name=mRNA_E-siliculosus-1a_F_contig13809.2267.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13809:23..1219- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACTGGTTTGTCGAAGAAGTGGCGGACTACGAGCCGAACAAACTCGA
TGCAAGGAAAACAACTCCTGCCGTACAGATGGACTGGTTTGTCGAAGAAG
TGGCGGACTACGAGCCGAACAAACTCGATGCAAGGAAAACAACTCCTGCC
GTACAGGCTGGGAGGAAGCTTGGGAAAAGGCACCTCCAGATCCTTCTAAA
GGCGGTTGGGCGGGATTGCCTCCGCGGCACAAACACTCCTGACGAGAAGG
CTGGGAGGAAGCTTGGGAAAAGGCACCTCCAGATCCTTCTAAAGGCGGTT
GGGCGGGATTGCCTCCGCGGCACAAACACTCCTGACGAGAAGGTGAAAGT
TCTTGTCGGGATTATACTCCCAGAGGCCGAGCGGAAAGTTGGTTCGACAT
CTCACGGCACGCCGGAGCGAATCGATGACGACCCGGTGAAAGTTCTTGTC
GGGATTATACTCCCAGAGGCCGAGCGGAAAGTTGGTTCGACATCTCACGG
CACGCCGGAGCGAATCGATGACGACCCG
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