mRNA_E-siliculosus-1a_F_contig138.2261.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig138.2261.1 vs. uniprot
Match: D7G1J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J1_ECTSI) HSP 1 Score: 822 bits (2122), Expect = 7.180e-296 Identity = 467/594 (78.62%), Postives = 475/594 (79.97%), Query Frame = 1
Query: 1 MAPPKLAMRNQAVQAVGEKYFQVALVGLATAGVLAIVAVSIGSTRGMFEFTIDRCDCLLTSGVEDAVAQGEECVFGQDYMGVDIGWKSFVIDKAYSTEGCLDGWEGTKDIGSPFGDGIYRKKSAVYGNGASGAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGEGESEENFCQAKPWSFEVPLYAGWTAIAHVAVMFLTSVWILSKSGLVEGILDGSKLVGGKVVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKM-GGSPMHTRNNTLRTGEIAGVSPKMALGGDIEGQAPGGHNLSSPGPVQSIPRAAAAPASKAXXXXXXXXXXXXXXXXXXXGALPRKQGGXXXXXXXXSEEEVSPAIRSSSPWDRDGEESGSSGDVETDSSLGSVARSPASVVSGKGHEKNRSEIDWGRIMDAGDNAGTAKPYDDGDEDNESPRLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV 1779
MAPPKLAMRNQAVQAVGEKYFQVAL VDIGWKSFVIDKAYSTEGCLDGWEGTKDIGSPFGDGIYRKKSAVYGNGA+GAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGEGESEE FCQAKPW+FEVPLYAGWTAIAHVAVMFLTSVWIL+KSGLVEGILDGSKLVGGK VTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKM GGSP HT++NTLRTGE AGV PK+ALGGDIEGQA GGHNLSSPGPVQSIPRA AP SKA XXXXXXXXXXXXXXX LP K GGXXX SEEEVSPAIRSS GKGH K RSEIDWGRIMDAGDN GTAK YDDGDED++SP LSS MLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV
Sbjct: 1 MAPPKLAMRNQAVQAVGEKYFQVAL--------------------------------------------------------VDIGWKSFVIDKAYSTEGCLDGWEGTKDIGSPFGDGIYRKKSAVYGNGATGAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGEGESEEIFCQAKPWNFEVPLYAGWTAIAHVAVMFLTSVWILTKSGLVEGILDGSKLVGGKAVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKMQGGSPKHTKDNTLRTGERAGVRPKIALGGDIEGQATGGHNLSSPGPVQSIPRATGAPGSKAATXXXXXXXXXXXXXXX----LPGKPGGXXXRSASASEEEVSPAIRSSI---------------------------------GKGHGKTRSEIDWGRIMDAGDNDGTAKQYDDGDEDDDSPHLSSVMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV 501
BLAST of mRNA_E-siliculosus-1a_F_contig138.2261.1 vs. uniprot
Match: A0A6H5L9G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G0_9PHAE) HSP 1 Score: 452 bits (1162), Expect = 2.810e-152 Identity = 277/383 (72.32%), Postives = 284/383 (74.15%), Query Frame = 1
Query: 787 MFLTSVWILSKSGLVEGILDGSKLVGGKVVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKMGGSPMHTRNNTLRTGEIAGVSPKMALGGDIEGQAPGGHNLSSPGPVQSIPRAAAAPASKAXXXXXXXXXXXXXXXXXXXGALPRKQ---GGXXXXXXXXSEEEVSPAIRSSS-------------------------------------------------PWDRDGEESGSSGDVETDSSLGSVARSPASVVSGKGHEKNRSEIDWGRIMDAGDNAGTAKPYDDGDEDNESPRLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV 1779
MFLTSVWILSKSGLVEGILDGSKLV GK VT AVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAE LVSPLRKMGGSP HT+NNTLRTGE AGV P +ALG DIEGQAPGGHNLSSPGPV+SIPRAA APASKA XXXXXXXXXXXXXXXXX GG SEEEVSPAIRSS PWDRD +GDVETDSSLG+VARSPASVVSGKGHEK RSEIDWGRIMDAG N GTAK YDDGDED++SP LSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPK RGSATHFEV
Sbjct: 1 MFLTSVWILSKSGLVEGILDGSKLVDGKAVT--------AVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEVLVSPLRKMGGSPKHTKNNTLRTGESAGVRPNIALGADIEGQAPGGHNLSSPGPVESIPRAAVAPASKAATXXXXXXXXXXXXXXXXXXXXXXXXXXPGGEGGRSASASEEEVSPAIRSSGSSGRTLNRRAHAMGIKPQSSMTSHHIIRRRQITMVNRDHVSTSKYHNKGPWDRD------AGDVETDSSLGNVARSPASVVSGKGHEKTRSEIDWGRIMDAGHNDGTAKSYDDGDEDDDSPHLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKARGSATHFEV 369
BLAST of mRNA_E-siliculosus-1a_F_contig138.2261.1 vs. uniprot
Match: A0A6H5KVI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI6_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 2.320e-7 Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = -3
Query: 369 MMMAMNADTTNSPTDASAAPEAPLPYTA 452
MMMAMN DTTNSPTDASAAPEAPLPYTA
Sbjct: 1 MMMAMNVDTTNSPTDASAAPEAPLPYTA 28 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig138.2261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig138.2261.1 >prot_E-siliculosus-1a_F_contig138.2261.1 ID=prot_E-siliculosus-1a_F_contig138.2261.1|Name=mRNA_E-siliculosus-1a_F_contig138.2261.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=594bp MAPPKLAMRNQAVQAVGEKYFQVALVGLATAGVLAIVAVSIGSTRGMFEFback to top mRNA from alignment at E-siliculosus-1a_F_contig138:57635..68589- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig138.2261.1 ID=mRNA_E-siliculosus-1a_F_contig138.2261.1|Name=mRNA_E-siliculosus-1a_F_contig138.2261.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10955bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig138:57635..68589- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig138:57635..68589- >mRNA_E-siliculosus-1a_F_contig138.2261.1 ID=mRNA_E-siliculosus-1a_F_contig138.2261.1|Name=mRNA_E-siliculosus-1a_F_contig138.2261.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig138:57635..68589- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |