mRNA_E-siliculosus-1a_F_contig13785.2252.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13785.2252.1
Unique NamemRNA_E-siliculosus-1a_F_contig13785.2252.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13785.2252.1 vs. uniprot
Match: A0A2D6PJL8_HALSX (DNA-directed DNA polymerase (Fragment) n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A2D6PJL8_HALSX)

HSP 1 Score: 752 bits (1942), Expect = 6.770e-267
Identity = 378/411 (91.97%), Postives = 390/411 (94.89%), Query Frame = 1
Query:    1 GLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGALNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIVEARQTDGPYKDIFDFCRRIDSKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGMLDMFGDAFVEADDNDSNVYAEYLGAREWTDRERLSGEKDT 1233
            GLVKFDFLGLRTLTIIDWALEMVDKVR   GQG LNID+IPLDD  TFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQH+LLKPVL+PTYGIILYQEQVMQIAQVMAGY+LGQADMLRRAMGKKKPEEMAKQR GFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECR+L LTVTPPDVNVGGYKFTVDT+ RVVYGLGAIRGVGEGPIGAIVEAR  DGP+ D+FDFCRRID KRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGM+DMFG AFV A++  S+VYAEY   REWTDRERLSGE DT
Sbjct:  212 GLVKFDFLGLRTLTIIDWALEMVDKVRDAAGQGPLNIDAIPLDDGKTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHDLLKPVLTPTYGIILYQEQVMQIAQVMAGYTLGQADMLRRAMGKKKPEEMAKQRXGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRHLXLTVTPPDVNVGGYKFTVDTEGRVVYGLGAIRGVGEGPIGAIVEARNADGPFNDLFDFCRRIDPKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGMMDMFGXAFV-AEEEASDVYAEYRHVREWTDRERLSGEXDT 621          
BLAST of mRNA_E-siliculosus-1a_F_contig13785.2252.1 vs. uniprot
Match: UPI001D0A525A (DNA polymerase III subunit alpha n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D0A525A)

HSP 1 Score: 762 bits (1968), Expect = 4.950e-266
Identity = 384/412 (93.20%), Postives = 396/412 (96.12%), Query Frame = 1
Query:    1 GLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGALNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIVEARQTDGPYKDIFDFCRRIDSKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGMLDMFGDAFVEADDNDS-NVYAEYLGAREWTDRERLSGEKDT 1233
            GLVKFDFLGLRTLTIIDWALEMVDKVR   GQGALNID+IPLDD  TFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVL+PTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQR GFM+GCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIV ARQ  GP+KD+FDFCRRID KRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQ+LGMLDMFGDAF  A+++ + +VYAEY  AREW+DRERLSGEKDT
Sbjct:  556 GLVKFDFLGLRTLTIIDWALEMVDKVRDAAGQGALNIDAIPLDDGKTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLTPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMDGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIVAARQEGGPFKDLFDFCRRIDPKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQSLGMLDMFGDAFAAAEEDTAVDVYAEYRHAREWSDRERLSGEKDT 967          
BLAST of mRNA_E-siliculosus-1a_F_contig13785.2252.1 vs. uniprot
Match: A0A7Z0LKE3_9GAMM (DNA polymerase III subunit alpha n=1 Tax=Halomonas salicampi TaxID=1449798 RepID=A0A7Z0LKE3_9GAMM)

HSP 1 Score: 761 bits (1965), Expect = 1.280e-265
Identity = 379/411 (92.21%), Postives = 396/411 (96.35%), Query Frame = 1
Query:    1 GLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGALNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIVEARQTDGPYKDIFDFCRRIDSKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGMLDMFGDAFVEADDNDSNVYAEYLGAREWTDRERLSGEKDT 1233
            GLVKFDFLGLRTLTIIDWALEMVDKVR+V G+G LNID+IPLDD PTF+MLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQH+LL+PVL PTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQR GFM+GCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECR+LKLTVTPPDVNVGGYKFTVD+DARVVYGLGAIRGVGEGPIGAIVEAR  +GP+ D+FDFCRRID KRMNKRTLEALIRSGALDNLGPNRAVLFA+MEDALKAAAQNH NQNLGMLDMFGDAF  A+DND  VYAEYLG REW+DRERL+GEK+T
Sbjct:  556 GLVKFDFLGLRTLTIIDWALEMVDKVRAVEGEGPLNIDAIPLDDVPTFDMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHKLLEPVLKPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMDGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRHLKLTVTPPDVNVGGYKFTVDSDARVVYGLGAIRGVGEGPIGAIVEARDAEGPFTDLFDFCRRIDPKRMNKRTLEALIRSGALDNLGPNRAVLFASMEDALKAAAQNHTNQNLGMLDMFGDAFEAAEDND--VYAEYLGVREWSDRERLAGEKET 964          
BLAST of mRNA_E-siliculosus-1a_F_contig13785.2252.1 vs. uniprot
Match: H0J691_9GAMM (DNA polymerase III subunit alpha n=103 Tax=root TaxID=1 RepID=H0J691_9GAMM)

HSP 1 Score: 754 bits (1948), Expect = 4.850e-263
Identity = 380/411 (92.46%), Postives = 392/411 (95.38%), Query Frame = 1
Query:    1 GLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGALNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIVEARQTDGPYKDIFDFCRRIDSKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGMLDMFGDAFVEADDNDSNVYAEYLGAREWTDRERLSGEKDT 1233
            GLVKFDFLGLRTLTIIDWAL+MVDKVR VNGQ  LNID+IPLDD  TFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQR GFMEGCA NGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGY+FTVDT+ RVVYGLGAIRGVGEGPIGAIVEAR TDGP+KD+FDFCRR+D KRMNKRTLEALIRSGALD LGPNRAVL AAMEDALKAAAQNHANQNLGMLDMFG++F  A++  S+ YAEY  AREWTDRERLSGEKDT
Sbjct:  556 GLVKFDFLGLRTLTIIDWALKMVDKVRGVNGQEPLNIDAIPLDDGKTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCADNGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYRFTVDTEGRVVYGLGAIRGVGEGPIGAIVEARNTDGPFKDLFDFCRRLDPKRMNKRTLEALIRSGALDTLGPNRAVLAAAMEDALKAAAQNHANQNLGMLDMFGESF-SAEEEASDPYAEYHNAREWTDRERLSGEKDT 965          
BLAST of mRNA_E-siliculosus-1a_F_contig13785.2252.1 vs. uniprot
Match: A0A556W7E4_HALSX (DNA polymerase III subunit alpha n=3 Tax=Halomonas TaxID=2745 RepID=A0A556W7E4_HALSX)

HSP 1 Score: 751 bits (1938), Expect = 1.520e-261
Identity = 378/411 (91.97%), Postives = 391/411 (95.13%), Query Frame = 1
Query:    1 GLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGALNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIVEARQTDGPYKDIFDFCRRIDSKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGMLDMFGDAFVEADDNDSNVYAEYLGAREWTDRERLSGEKDT 1233
            GLVKFDFLGLRTLTIIDWALEMVDKVR+VN Q  L+ID+IPLDD  TFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQR GFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECR+LKLTVTPPDVNVGGY+FTVD   RVVYGLGAIRGVGEGPIGAIV AR+++GP+KD+FDFCRRID KRMNKRTLEALIRSGALDNLGPNRAVL AA+EDALKAAAQNH NQNLGMLDMFGDAF  A+DND  VYAEY   REWTDRERL+GEKDT
Sbjct:  556 GLVKFDFLGLRTLTIIDWALEMVDKVRAVNDQAPLDIDAIPLDDGATFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRHLKLTVTPPDVNVGGYRFTVDEQGRVVYGLGAIRGVGEGPIGAIVAARESEGPFKDMFDFCRRIDPKRMNKRTLEALIRSGALDNLGPNRAVLAAAVEDALKAAAQNHTNQNLGMLDMFGDAFEAAEDND--VYAEYRQVREWTDRERLAGEKDT 964          
BLAST of mRNA_E-siliculosus-1a_F_contig13785.2252.1 vs. uniprot
Match: A0A5R8MGP1_9GAMM (DNA polymerase III subunit alpha n=17 Tax=Halomonas TaxID=2745 RepID=A0A5R8MGP1_9GAMM)

HSP 1 Score: 743 bits (1918), Expect = 1.670e-258
Identity = 368/411 (89.54%), Postives = 388/411 (94.40%), Query Frame = 1
Query:    1 GLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGALNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIVEARQTDGPYKDIFDFCRRIDSKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGMLDMFGDAFVEADDNDSNVYAEYLGAREWTDRERLSGEKDT 1233
            GLVKFDFLGLRTLTIIDWALEMVDKVR+V GQG LNID+IPLDDAPTFEMLK+AETTAVFQLESRGMKELIKRLLPDSL+DMIALVALFRPGPLQSGMVDDFINRKHGRAE+SYPHPDYQHELLKPVL PTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQR GFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECR+L LTVTPPDVNVGGYKFTVD  ARVVYGLGAIRGVGEGPIGAIVEAR+  GP+ D+FDFCRR+D KRMNKRTLEALIRSGALD LGP+RAVL AA+EDALKAAAQN  NQNLGM+DMFG+AF E D+ + + Y +Y  AREWTD+ERL+GEKDT
Sbjct:  556 GLVKFDFLGLRTLTIIDWALEMVDKVRAVEGQGPLNIDTIPLDDAPTFEMLKKAETTAVFQLESRGMKELIKRLLPDSLEDMIALVALFRPGPLQSGMVDDFINRKHGRAEISYPHPDYQHELLKPVLGPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRHLGLTVTPPDVNVGGYKFTVDEQARVVYGLGAIRGVGEGPIGAIVEAREAGGPFADLFDFCRRVDPKRMNKRTLEALIRSGALDTLGPSRAVLTAALEDALKAAAQNQTNQNLGMMDMFGEAFAEPDEGEQDAYGDYHHAREWTDKERLAGEKDT 966          
BLAST of mRNA_E-siliculosus-1a_F_contig13785.2252.1 vs. uniprot
Match: A0A7W5PAD5_9GAMM (DNA polymerase III subunit alpha n=1 Tax=Halomonas campaniensis TaxID=213554 RepID=A0A7W5PAD5_9GAMM)

HSP 1 Score: 742 bits (1915), Expect = 4.460e-258
Identity = 370/411 (90.02%), Postives = 391/411 (95.13%), Query Frame = 1
Query:    1 GLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGALNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIVEARQTDGPYKDIFDFCRRIDSKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGMLDMFGDAFVEADDNDSNVYAEYLGAREWTDRERLSGEKDT 1233
            GLVKFDFLGLRTLTIIDWALEMVDKVR+V+GQG LNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAE+SYPHPDYQHELLKPVL PTYGIILYQEQVMQIAQVMAGY+LGQADMLRRAMGKKKPEEMAKQR GFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECR+L LTVTPPDVNVG YKF+VDT+ RVVYGLGAIRGVGEGPIGAIVEAR  DGP+ D+FDFCRR+D +RMNKRTLEALIRSGALD LGPNRAVL AA++DALKAAAQ   NQNLGM+DMFG+AFV  D+ +S+ YA YLGAREWTD+ERL+GEK+T
Sbjct:  556 GLVKFDFLGLRTLTIIDWALEMVDKVRAVSGQGPLNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEISYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVMAGYTLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRHLGLTVTPPDVNVGEYKFSVDTEGRVVYGLGAIRGVGEGPIGAIVEARAADGPFADLFDFCRRVDPRRMNKRTLEALIRSGALDTLGPNRAVLAAALDDALKAAAQTQTNQNLGMIDMFGEAFV--DEAESDAYAGYLGAREWTDKERLAGEKET 964          
BLAST of mRNA_E-siliculosus-1a_F_contig13785.2252.1 vs. uniprot
Match: W7QB73_9GAMM (DNA-directed DNA polymerase n=1 Tax=Halomonas sp. BC04 TaxID=1403540 RepID=W7QB73_9GAMM)

HSP 1 Score: 723 bits (1865), Expect = 1.340e-257
Identity = 361/411 (87.83%), Postives = 384/411 (93.43%), Query Frame = 1
Query:    1 GLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGALNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIVEARQTDGPYKDIFDFCRRIDSKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGMLDMFGDAFVEADDNDSNVYAEYLGAREWTDRERLSGEKDT 1233
            GLVKFDFLGLRTLTIIDWALEMVDKVR+  GQG LNID+IPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSL+DMIALVALFRPGPLQSGMVDDFINRKH RAE+SYPHPDYQHELLKPVL PTYGIILYQEQVMQIAQV+AGYSLGQADMLRRAMGKKKPEEMAKQR GFMEGCAANGIDK+LAGNIFDLVEKFAGYGFNKSHSAAY LVSYQTAWLK+HYPGPFMAAVMSTEMDNLDKVVPLIEECR+L LTVTPPDVNVGGYKFTVD +ARVVYGLGAIRGVGEGPIGAIVEAR+  GP+ D+FDFCRR+D +RMNKRTLEALIRSGALDNLGPNRAVL AAME ALKAAAQ   NQNLGM+DMFG+AF  AD+ +++ Y  Y   REWTD+ERL+GEK+T
Sbjct:   54 GLVKFDFLGLRTLTIIDWALEMVDKVRAAAGQGPLNIDTIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLEDMIALVALFRPGPLQSGMVDDFINRKHARAEISYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAANGIDKELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKSHYPGPFMAAVMSTEMDNLDKVVPLIEECRHLGLTVTPPDVNVGGYKFTVDIEARVVYGLGAIRGVGEGPIGAIVEAREAGGPFTDLFDFCRRVDPRRMNKRTLEALIRSGALDNLGPNRAVLSAAMEAALKAAAQTQTNQNLGMVDMFGEAF--ADEAEADPYEAYRQVREWTDKERLAGEKET 462          
BLAST of mRNA_E-siliculosus-1a_F_contig13785.2252.1 vs. uniprot
Match: A0A1P8QZQ1_9GAMM (DNA polymerase III subunit alpha n=5 Tax=Halomonas TaxID=2745 RepID=A0A1P8QZQ1_9GAMM)

HSP 1 Score: 737 bits (1903), Expect = 2.880e-256
Identity = 367/411 (89.29%), Postives = 391/411 (95.13%), Query Frame = 1
Query:    1 GLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGALNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIVEARQTDGPYKDIFDFCRRIDSKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGMLDMFGDAFVEADDNDSNVYAEYLGAREWTDRERLSGEKDT 1233
            GLVKFDFLGLRTLTIIDWALEMVDKVR+V G+G L+ID+IPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSL+DMIALVALFRPGPLQSGMVDDFINRKHGRAE+SYPHPDYQHE LK VL PTYGIILYQEQVMQIAQV+AGYSLGQADMLRRAMGKKKPEEMAKQR GFMEGCAANGIDK+LAGNIFDLVEKFAGYGFNKSHSAAY LVSYQTAWLK+HYPGPFMAAV+STEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDT+ RVVYGLGAIRGVGEGPIGAIVEAR+ DGP+KD+FDFCRR+D KRMNKRTLEALIRSGALDNLGPNRAVL AA+E ALKAAAQN +NQNLGM+DMFG+AFV+ +  D  VYA+Y  AREWTD+ERL+GEKDT
Sbjct:  556 GLVKFDFLGLRTLTIIDWALEMVDKVRAVKGEGPLDIDTIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLEDMIALVALFRPGPLQSGMVDDFINRKHGRAEISYPHPDYQHEWLKTVLEPTYGIILYQEQVMQIAQVLAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAANGIDKELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKSHYPGPFMAAVISTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTEGRVVYGLGAIRGVGEGPIGAIVEAREADGPFKDLFDFCRRVDPKRMNKRTLEALIRSGALDNLGPNRAVLSAALEAALKAAAQNLSNQNLGMIDMFGEAFVDEEVGD--VYADYRDAREWTDKERLAGEKDT 964          
BLAST of mRNA_E-siliculosus-1a_F_contig13785.2252.1 vs. uniprot
Match: A0A7X3GYY1_9GAMM (DNA polymerase III subunit alpha n=2 Tax=Halomonas TaxID=2745 RepID=A0A7X3GYY1_9GAMM)

HSP 1 Score: 736 bits (1901), Expect = 5.760e-256
Identity = 371/411 (90.27%), Postives = 387/411 (94.16%), Query Frame = 1
Query:    1 GLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGALNIDSIPLDDAPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAIVEARQTDGPYKDIFDFCRRIDSKRMNKRTLEALIRSGALDNLGPNRAVLFAAMEDALKAAAQNHANQNLGMLDMFGDAFVEADDNDSNVYAEYLGAREWTDRERLSGEKDT 1233
            GLVKFDFLGLRTLTIIDWALEMVDKVR+V G+G L+IDSIPLDD+PTFEMLKRAETTAVFQLESRGMKELIKRLLPDSL+DMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQH LLKPVL PTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQR GFMEGCA +GIDK+LAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECR LKLTVTPPDVNVGGYKFTVD D RVVYGLGAIRGVGEGPI AIV+AR+T G + D+FDFCRRID KR+ KRTLEALIRSGALDNLGPNRAVL AA+EDALKAAAQNH+NQN GM+DMFG+AFVE DD D  VYA YL AREWTDRERLSGEK T
Sbjct:  556 GLVKFDFLGLRTLTIIDWALEMVDKVRAVEGRGPLDIDSIPLDDSPTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLEDMIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQHALLKPVLEPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCADHGIDKELAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVPLIEECRQLKLTVTPPDVNVGGYKFTVDKDKRVVYGLGAIRGVGEGPIDAIVQARETGGAFTDLFDFCRRIDPKRLTKRTLEALIRSGALDNLGPNRAVLAAALEDALKAAAQNHSNQNRGMVDMFGEAFVEQDDTD--VYANYLNAREWTDRERLSGEKVT 964          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13785.2252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6PJL8_HALSX6.770e-26791.97DNA-directed DNA polymerase (Fragment) n=1 Tax=Hal... [more]
UPI001D0A525A4.950e-26693.20DNA polymerase III subunit alpha n=1 Tax=Halomonas... [more]
A0A7Z0LKE3_9GAMM1.280e-26592.21DNA polymerase III subunit alpha n=1 Tax=Halomonas... [more]
H0J691_9GAMM4.850e-26392.46DNA polymerase III subunit alpha n=103 Tax=root Ta... [more]
A0A556W7E4_HALSX1.520e-26191.97DNA polymerase III subunit alpha n=3 Tax=Halomonas... [more]
A0A5R8MGP1_9GAMM1.670e-25889.54DNA polymerase III subunit alpha n=17 Tax=Halomona... [more]
A0A7W5PAD5_9GAMM4.460e-25890.02DNA polymerase III subunit alpha n=1 Tax=Halomonas... [more]
W7QB73_9GAMM1.340e-25787.83DNA-directed DNA polymerase n=1 Tax=Halomonas sp. ... [more]
A0A1P8QZQ1_9GAMM2.880e-25689.29DNA polymerase III subunit alpha n=5 Tax=Halomonas... [more]
A0A7X3GYY1_9GAMM5.760e-25690.27DNA polymerase III subunit alpha n=2 Tax=Halomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13785contigE-siliculosus-1a_F_contig13785:2..1234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1233
Model size1233
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.L
EC2.7.7.7
EggNOG OGs1MUIF@1224,1RP0K@1236,1XI0M@135619,COG0587@1,COG0587@2
EggNOG free text desc.DNA polymerase
GOsGO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032991,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0046483,GO:0061695,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
KEGG ModuleM00260
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440
KEGG ReactionR00375,R00376,R00377,R00378
KEGG koko:K02337
KEGG rclassRC02795
Preferred namednaE
Seed eggNOG ortholog1504981.KO116_0456
Seed ortholog evalue3.6e-227
Seed ortholog score793.9
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927891.5822234-CDS-E-siliculosus-1a_F_contig13785:1..12341622927891.5822234-CDS-E-siliculosus-1a_F_contig13785:1..1234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13785 2..1234 +
1696318725.5908115-CDS-E-siliculosus-1a_F_contig13785:1..12341696318725.5908115-CDS-E-siliculosus-1a_F_contig13785:1..1234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13785 2..1234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13785.2252.1prot_E-siliculosus-1a_F_contig13785.2252.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13785 2..1234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13785.2252.1

>prot_E-siliculosus-1a_F_contig13785.2252.1 ID=prot_E-siliculosus-1a_F_contig13785.2252.1|Name=mRNA_E-siliculosus-1a_F_contig13785.2252.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=411bp
GLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQGALNIDSIPLDDAPTFEM
LKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVD
DFINRKHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAG
YSLGQADMLRRAMGKKKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVE
KFAGYGFNKSHSAAYALVSYQTAWLKAHYPGPFMAAVMSTEMDNLDKVVP
LIEECRNLKLTVTPPDVNVGGYKFTVDTDARVVYGLGAIRGVGEGPIGAI
VEARQTDGPYKDIFDFCRRIDSKRMNKRTLEALIRSGALDNLGPNRAVLF
AAMEDALKAAAQNHANQNLGMLDMFGDAFVEADDNDSNVYAEYLGAREWT
DRERLSGEKDT
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mRNA from alignment at E-siliculosus-1a_F_contig13785:2..1234+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13785.2252.1 ID=mRNA_E-siliculosus-1a_F_contig13785.2252.1|Name=mRNA_E-siliculosus-1a_F_contig13785.2252.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1233bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13785:2..1234+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTCTGGTTAAGTTCGACTTCCTGGGTCTGCGCACGCTGACGATTATCGA CTGGGCGCTTGAGATGGTCGATAAGGTGCGCAGCGTCAACGGTCAGGGGG CGTTGAATATCGACAGCATCCCGCTAGACGATGCGCCTACCTTTGAGATG CTCAAGCGCGCCGAGACCACGGCGGTGTTCCAGCTCGAGTCTCGTGGCAT GAAGGAGCTGATCAAGCGCCTGTTGCCCGACTCCCTGGACGATATGATCG CCTTGGTGGCGCTATTCCGCCCTGGCCCATTGCAGTCGGGCATGGTAGAC GACTTTATTAACCGTAAGCATGGCCGGGCCGAAGTCTCTTACCCACACCC AGACTACCAGCATGAGCTGCTGAAGCCGGTGCTGTCGCCTACCTACGGCA TCATTCTTTACCAAGAGCAGGTTATGCAGATTGCTCAGGTAATGGCAGGT TACAGCTTGGGGCAGGCTGATATGTTGCGCCGTGCCATGGGTAAGAAAAA ACCCGAAGAGATGGCTAAGCAGCGCGACGGTTTTATGGAAGGTTGTGCTG CCAACGGTATCGATAAAGACCTTGCCGGCAACATCTTTGACTTGGTCGAA AAATTCGCTGGCTACGGTTTTAACAAGTCGCACTCAGCCGCCTACGCGCT GGTGTCTTATCAAACCGCGTGGCTAAAAGCCCACTATCCAGGGCCTTTTA TGGCCGCTGTTATGTCCACCGAAATGGACAACCTGGATAAAGTGGTACCA CTAATTGAAGAGTGTCGGAACCTTAAGCTCACCGTAACGCCGCCGGATGT GAACGTCGGTGGTTACAAGTTCACTGTCGACACCGATGCCCGCGTGGTTT ACGGCTTGGGTGCGATTCGTGGTGTGGGTGAAGGCCCTATTGGCGCTATT GTGGAAGCCCGCCAGACAGATGGCCCGTATAAAGATATCTTCGACTTCTG TCGTCGTATCGATTCTAAACGGATGAATAAGCGCACGCTGGAAGCACTGA TTCGCTCCGGCGCGCTGGATAATTTAGGACCCAATCGTGCGGTGCTGTTT GCAGCGATGGAAGATGCGTTAAAAGCCGCGGCACAGAACCATGCCAATCA AAATCTGGGTATGTTGGACATGTTTGGCGACGCTTTTGTTGAGGCTGATG ACAACGACAGCAACGTTTACGCAGAGTACCTTGGTGCGAGGGAGTGGACT GACCGCGAGCGACTTTCGGGTGAAAAAGATACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13785:2..1234+

>mRNA_E-siliculosus-1a_F_contig13785.2252.1 ID=mRNA_E-siliculosus-1a_F_contig13785.2252.1|Name=mRNA_E-siliculosus-1a_F_contig13785.2252.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2466bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13785:2..1234+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTCTGGTTAAGTTCGACTTCCTGGGTCTGCGCACGCTGACGATTATCGA
CTGGGCGCTTGAGATGGTCGATAAGGTGCGCAGCGTCAACGGTCAGGGGG
CGTTGAATATCGACAGCATCCCGCTAGACGATGCGCCTACCTTTGAGATG
CTCAAGCGCGCCGAGACCACGGCGGTGTTCCAGCTCGAGTCTCGTGGCAT
GAAGGAGCTGATCAAGCGCCTGTTGCCCGACTCCCTGGACGATATGATCG
CCTTGGTGGCGCTATTCCGCCCTGGCCCATTGCAGTCGGGCATGGTAGAC
GACTTTATTAACCGTAAGCATGGCCGGGCCGAAGTCTCTTACCCACACCC
AGACTACCAGCATGAGCTGCTGAAGCCGGTGCTGTCGCCTACCTACGGCA
TCATTCTTTACCAAGAGCAGGTTATGCAGATTGCTCAGGTAATGGCAGGT
TACAGCTTGGGGCAGGCTGATATGTTGCGCCGTGCCATGGGTAAGAAAAA
ACCCGAAGAGATGGCTAAGCAGCGCGACGGTTTTATGGAAGGTTGTGCTG
CCAACGGTATCGATAAAGACCTTGCCGGCAACATCTTTGACTTGGTCGAA
AAATTCGCTGGCTACGGTTTTAACAAGTCGCACTCAGCCGCCTACGCGCT
GGTGTCTTATCAAACCGCGTGGCTAAAAGCCCACTATCCAGGGCCTTTTA
TGGCCGCTGTTATGTCCACCGAAATGGACAACCTGGATAAAGTGGTACCA
CTAATTGAAGAGTGTCGGAACCTTAAGCTCACCGTAACGCCGCCGGATGT
GAACGTCGGTGGTTACAAGTTCACTGTCGACACCGATGCCCGCGTGGTTT
ACGGCTTGGGTGCGATTCGTGGTGTGGGTGAAGGCCCTATTGGCGCTATT
GTGGAAGCCCGCCAGACAGATGGCCCGTATAAAGATATCTTCGACTTCTG
TCGTCGTATCGATTCTAAACGGATGAATAAGCGCACGCTGGAAGCACTGA
TTCGCTCCGGCGCGCTGGATAATTTAGGACCCAATCGTGCGGTGCTGTTT
GCAGCGATGGAAGATGCGTTAAAAGCCGCGGCACAGAACCATGCCAATCA
AAATCTGGGTATGTTGGACATGTTTGGCGACGCTTTTGTTGAGGCTGATG
ACAACGACAGCAACGTTTACGCAGAGTACCTTGGTGCGAGGGAGTGGACT
GACCGCGAGCGACTTTCGGGTGAAAAAGATACCGGTCTGGTTAAGTTCGA
CTTCCTGGGTCTGCGCACGCTGACGATTATCGACTGGGCGCTTGAGATGG
TCGATAAGGTGCGCAGCGTCAACGGTCAGGGGGCGTTGAATATCGACAGC
ATCCCGCTAGACGATGCGCCTACCTTTGAGATGCTCAAGCGCGCCGAGAC
CACGGCGGTGTTCCAGCTCGAGTCTCGTGGCATGAAGGAGCTGATCAAGC
GCCTGTTGCCCGACTCCCTGGACGATATGATCGCCTTGGTGGCGCTATTC
CGCCCTGGCCCATTGCAGTCGGGCATGGTAGACGACTTTATTAACCGTAA
GCATGGCCGGGCCGAAGTCTCTTACCCACACCCAGACTACCAGCATGAGC
TGCTGAAGCCGGTGCTGTCGCCTACCTACGGCATCATTCTTTACCAAGAG
CAGGTTATGCAGATTGCTCAGGTAATGGCAGGTTACAGCTTGGGGCAGGC
TGATATGTTGCGCCGTGCCATGGGTAAGAAAAAACCCGAAGAGATGGCTA
AGCAGCGCGACGGTTTTATGGAAGGTTGTGCTGCCAACGGTATCGATAAA
GACCTTGCCGGCAACATCTTTGACTTGGTCGAAAAATTCGCTGGCTACGG
TTTTAACAAGTCGCACTCAGCCGCCTACGCGCTGGTGTCTTATCAAACCG
CGTGGCTAAAAGCCCACTATCCAGGGCCTTTTATGGCCGCTGTTATGTCC
ACCGAAATGGACAACCTGGATAAAGTGGTACCACTAATTGAAGAGTGTCG
GAACCTTAAGCTCACCGTAACGCCGCCGGATGTGAACGTCGGTGGTTACA
AGTTCACTGTCGACACCGATGCCCGCGTGGTTTACGGCTTGGGTGCGATT
CGTGGTGTGGGTGAAGGCCCTATTGGCGCTATTGTGGAAGCCCGCCAGAC
AGATGGCCCGTATAAAGATATCTTCGACTTCTGTCGTCGTATCGATTCTA
AACGGATGAATAAGCGCACGCTGGAAGCACTGATTCGCTCCGGCGCGCTG
GATAATTTAGGACCCAATCGTGCGGTGCTGTTTGCAGCGATGGAAGATGC
GTTAAAAGCCGCGGCACAGAACCATGCCAATCAAAATCTGGGTATGTTGG
ACATGTTTGGCGACGCTTTTGTTGAGGCTGATGACAACGACAGCAACGTT
TACGCAGAGTACCTTGGTGCGAGGGAGTGGACTGACCGCGAGCGACTTTC
GGGTGAAAAAGATACC
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