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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1374.2239.1 vs. uniprot
Match: D7G5A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A1_ECTSI) HSP 1 Score: 363 bits (931), Expect = 2.970e-123 Identity = 272/295 (92.20%), Postives = 274/295 (92.88%), Query Frame = 1
Query: 1 MRSTSYPRVPRALFCSALLLSQHAVVDANNWTTGRASSSRSSTLAVMQPGGRNRPIRDWKAIKREAEEKRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETVSAEVLDMEEDTAEDIGIMLAKVVVIATAGVYGVKKVVAFAKAFTKARKDRKISGEEGGGVADGLSAVAATKDAKDKDKXXXXXXXXXDAEVASGGNKEGDAXXXXXXXXXXXXXXXXXXXXXXSASEMLAGMGKAAKEMKKRAKGSLENLKSGLGEATGRGDEDVQGAGEGDSPPSLPKGVDGGKVDVSYV 885
MRSTSYPRVPRALFCSALLLSQHAVVDANNW TGRASSSRSSTLAVMQPGGRNRPIRDWKAIKREAEEKRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXX ETVSAE LDMEEDTAEDIGIMLAKVVVIATAGVYG+KKVVAFAKAFTKARKDRK SGEEGGGVADGLSAVAATKDAKDKD XXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXSASEMLAGMGKAAK+MKKRAK SLENLKSGLGEATGRGDEDVQGAGEGDSPPSLPKGV GGKVDVSYV
Sbjct: 1 MRSTSYPRVPRALFCSALLLSQHAVVDANNWATGRASSSRSSTLAVMQPGGRNRPIRDWKAIKREAEEKRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLETVSAEALDMEEDTAEDIGIMLAKVVVIATAGVYGIKKVVAFAKAFTKARKDRKSSGEEGGGVADGLSAVAATKDAKDKDXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXSASEMLAGMGKAAKDMKKRAKDSLENLKSGLGEATGRGDEDVQGAGEGDSPPSLPKGVAGGKVDVSYV 293
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 888 |
| Model size | 888 |
| Exons | 5 |
| Ec32 ortholog | Ec-14_006760.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1374.2239.1 >prot_E-siliculosus-1a_F_contig1374.2239.1 ID=prot_E-siliculosus-1a_F_contig1374.2239.1|Name=mRNA_E-siliculosus-1a_F_contig1374.2239.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=296bp
MRSTSYPRVPRALFCSALLLSQHAVVDANNWTTGRASSSRSSTLAVMQPG
GRNRPIRDWKAIKREAEEKRKNKAEEKADEAVEAAQETVEQVVDEQVDQQ
LETVSAEVLDMEEDTAEDIGIMLAKVVVIATAGVYGVKKVVAFAKAFTKA
RKDRKISGEEGGGVADGLSAVAATKDAKDKDKDDDNDNGGGDAEVASGGN
KEGDAAAEEEEDETTDGFVTADEEEEDSASEMLAGMGKAAKEMKKRAKGS
LENLKSGLGEATGRGDEDVQGAGEGDSPPSLPKGVDGGKVDVSYV* back to topmRNA from alignment at E-siliculosus-1a_F_contig1374:13744..17153+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1374.2239.1 ID=mRNA_E-siliculosus-1a_F_contig1374.2239.1|Name=mRNA_E-siliculosus-1a_F_contig1374.2239.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3410bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1374:13744..17153+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCTCCACCAGCTACCCGCGCGTGCCTCGCGCATTATTTTGCTCTGC
CCTTCTTTTGAGCCAGCATGCGGTCGTAGACGCCAACAACTGGACAACGG
GGCGAGCCTCTTCTTCGCGATCCTCCACCCTGGCGGTGATGCAACCTGGC
GGAAGGAACAGGCCCATCCGCGACTGGAAGGCGATCAAGAGGTGTGCAGT
GGGCAGCGCACCCGAATGCCACACGGACGTCCTACTAGACGGGAAGCGGT
ACACGCATGTTAGTTCGTCTCGTGGGGTCGATTGCTGTTGGGGCTGCTGT
AGGCGAGGAAGGAACCTCCTGATGATCCTGTGTGTGAAGGATAGTCGCGC
CGCCGGCCGCGTGTCAACCGCATGCATGCGTCCTTGTCGTTGAGTAGTTG
AGTACCATCCGACACAACATGCACCCCCGACACGAGCACCGCAGGGGTAT
CCTACATTGCTAGTGAGAGGTAGTTTATGTCTTCAGGTCGCGTTCTTCGT
CGGTGCAGGGAGGCAGAGGAGAAAAGGAAGAACAAGGCAGAGGAGAAGGC
CGATGAGGCTGTTGAAGCTGCCCAAGAGACGGTGGAACAGGTCGTGGATG
AGCAAGTAGACCAGCAGCTGGAGACAGTGTCCGCGGAGGTGCTCGACATG
GAGGAGGACACGGCCGAGGATATTGGGATCATGCTGGCCAAGGTTGTCGT
GGTGAGTGGCAGTTGTGCAAGAGAACTCCAAGCGTCCATAACGTCTGCCC
CAACCGCTCGTGTGCTCGTCTTCGCACGCATGCCCGTGGGGACTGATGTT
GCGTGTACCTGCTGCAATGCAAGTGCGCCGTGGAAACTCTACTTGTGAGC
ACACCATCGCAGCCGCAGCAGAAGTGTTGCAGTGGGAGGTGCATCGTTCG
TGTGGCCCCACCCATGGTTATCTTGACTTGACATAGGTATGACCCGTATG
ATCTCTCTCTCTCTCTGGAAAGAATTGTAATGTCGGGAGGATTTGAACGT
CTACCTGTCTCTAGGAACGTTATGGATTATGCTGCTCTGCGGAGCAGTGA
AGCTTCGAAGAAAACGAAGATGATCATTGTGGTGGCCCCCAATGTCTCCA
CGGGGTGAACGACGAAAAATTGGCAGGTGGGGCGGAGAAACCGCACAAAA
TGGCCTGGAGAGCCATGAGAGCATCAGGATTGCAAATGCTGCAAGCGAGT
GTACCCTCGGCCCGCAGGTCTAGACTATAGGTCTGTTCTGCACAACGCAA
CACACGCATATACGAGCAGGGTGTATTCCATGGATATCGTGCACCTGGTG
ATGTATTGGCGGAGGACCCACGGCGTATGCGTTACGAACGAAGAAGTTGC
CGCACCCGCTGCATTGATCATACTACCATCTGCTGATGTCCTTATATCCT
CGATTGGACCACGATCTACCGCTGTGCTCTTCCTAATAGATCGCTACCGC
TGGAGTGTATGGTGTCAAGAAGGTGGTGGCGTTCGCGAAAGCCTTCACGA
AGGCCCGCAAGGACAGGAAAATCTCGGGAGAAGAAGGGGGAGGGGTAGCT
GACGGCTTGTCTGCTGTGGCTGCCACGAAAGACGCCAAGGACAAGGACAA
GGACGATGACAACGACAACGGAGGGGGAGATGCAGAGGTGACCACAGACC
TTAAATTTCGTGTTATCGAGGGTGGCCTTTTGTTCTTCGATGCCGCCTGT
TCGTGTTGGATGCCATTTTTTCACCAAAAACCTGAATATATTTCACGTCA
GGGTTGACCGTGCAAGCCTGTAGACTCACTTCTTTCTTGTCAAGACTTGT
GGCGTTGGATTGTATTGGCCTCGCTGGTGTGATGCGAACACGATGATCGT
CTACCTGCATGAAATTGTTTCTTCAGGGCCCATGTGCCGTGTCGAGCGCA
AGGTTCTTTGTGTGTTTGTCATTGGCGTTGTTTCCTAACCTTTGGGTGTT
TCCAACCTAGTGGTTGGCCCGCCTGGGCAAAGATGACTTGTCACGCGTGT
TGAGCGTAAGACGGCCCAACAAAAGTTCATGGCCAATACCCGCGTGCCCG
ACGCCTCATTTGCCGGTTCTTCCGTGGTGCTTGATGTTGCTTCGCCTGTC
TCCATGCAGGTGGCGAGTGGCGGAAACAAGGAGGGCGATGCGGCTGCGGA
GGAAGAGGAGGACGAGGTGAAGACAACAATTATTAACAAGAACAGATAGC
CTCACATCCTCCTTCGAATAGTGATGAACCCAAAATAGTCATTGTGATCC
TCCCGCTATTTGTCTTGTTCGTACAAGTCAACTCTTGTGACACTGGTGTG
CCGCAACAATTGTCTGGTGGCACTATTGTAGACCCCCCGCCCTCTCCTCG
GTGTTTGCCACCGGGGTTGGGTTTTCGTCGCTTGCCAACGACGTTGTAAA
ACAAGCTGATCACTTCGTGAGCTCGGCAACCAGGTTCCGCTTCTTCTTTT
TTTCCCTCTGTTTTTTTTGTTCGGCGGAAACAATCATGGTGGTCGAGTAG
ATTGTGTGTGCGGGGTCGAGAAACCTCACTCCGCGCAAAGGGGATGATCG
CACCGCGTTGTGTTAAATGGGTCAAGCACCCTCGAGGCAGTACAGTGCTT
ACAACTGCCTATGGAGGTGAAAGCACCAGGAAATACATTTAGACACACGC
AGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAACACCCTTA
CAGTAGCAGGATGCAGCGCACCCTGCATGCGACTCGCGGAGTACCTCACG
GTGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGT
GCTCAGTCCCGGCGTTGTAGGGATGCGAGGTAATTGGTCTAACGACTACA
GCATGCACGACTATGAGTACCCCCCCTCACCCCCCTCTAGACAGACAGAA
TATCGAAAGCTTGCACGTTGCCATCAACTGTGTGGGCCGTGTGGGCTGGA
GACAACGCTCTGTACCCCGAGTTCCTGGCACGTCTGGCTCACTGTCTGAA
ATGGCCGTGACTCGTGTTTCGATTGCTTGTCATCCAAGCATCGCTCTGTC
CGTCCTGCTTCGCCGCACAGTTTACTCGCACACATCGTTTTGTCTTCGAA
GTTTGTCGCCGCGGAATCCCAACACATGCCGTCAACCTCGCCCTTCTTCG
ATTTCGCCCAGACGACGGATGGGTTTGTCACAGCAGACGAGGAAGAGGAG
GACTCGGCATCGGAGATGCTAGCAGGCATGGGCAAAGCGGCCAAAGAAAT
GAAAAAGAGGGCCAAGGGTAGCCTTGAAAACTTGAAGAGCGGTCTCGGAG
AAGCCACCGGCAGAGGAGATGAGGATGTCCAGGGGGCTGGGGAGGGCGAC
TCTCCTCCAAGCCTCCCGAAAGGCGTTGACGGGGGTAAAGTTGACGTGTC
GTACGTTTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1374:13744..17153+ >mRNA_E-siliculosus-1a_F_contig1374.2239.1 ID=mRNA_E-siliculosus-1a_F_contig1374.2239.1|Name=mRNA_E-siliculosus-1a_F_contig1374.2239.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1776bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1374:13744..17153+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCTCCACCAGCTACCCGCGCGTGCCTCGCGCATTATTTTGCTCTGC
CCTTCTTTTGAGCCAGCATGCGGTCGTAGACGCCAACAACTGGACAACGG
GGCGAGCCTCTTCTTCGCGATCCTCCACCCTGGCGGTGATGCAACCTGGC
GGAAGGAACAGGCCCATCCGCGACTGGAAGGCGATCAAGAGATGCGCTCC
ACCAGCTACCCGCGCGTGCCTCGCGCATTATTTTGCTCTGCCCTTCTTTT
GAGCCAGCATGCGGTCGTAGACGCCAACAACTGGACAACGGGGCGAGCCT
CTTCTTCGCGATCCTCCACCCTGGCGGTGATGCAACCTGGCGGAAGGAAC
AGGCCCATCCGCGACTGGAAGGCGATCAAGAGGGAGGCAGAGGAGAAAAG
GAAGAACAAGGCAGAGGAGAAGGCCGATGAGGCTGTTGAAGCTGCCCAAG
AGACGGTGGAACAGGTCGTGGATGAGCAAGTAGACCAGCAGCTGGAGACA
GTGTCCGCGGAGGTGCTCGACATGGAGGAGGACACGGCCGAGGATATTGG
GATCATGCTGGCCAAGGTTGTCGTGGGAGGCAGAGGAGAAAAGGAAGAAC
AAGGCAGAGGAGAAGGCCGATGAGGCTGTTGAAGCTGCCCAAGAGACGGT
GGAACAGGTCGTGGATGAGCAAGTAGACCAGCAGCTGGAGACAGTGTCCG
CGGAGGTGCTCGACATGGAGGAGGACACGGCCGAGGATATTGGGATCATG
CTGGCCAAGGTTGTCGTGATCGCTACCGCTGGAGTGTATGGTGTCAAGAA
GGTGGTGGCGTTCGCGAAAGCCTTCACGAAGGCCCGCAAGGACAGGAAAA
TCTCGGGAGAAGAAGGGGGAGGGGTAGCTGACGGCTTGTCTGCTGTGGCT
GCCACGAAAGACGCCAAGGACAAGGACAAGGACGATGACAACGACAACGG
AGGGGGAGATGCAGAGATCGCTACCGCTGGAGTGTATGGTGTCAAGAAGG
TGGTGGCGTTCGCGAAAGCCTTCACGAAGGCCCGCAAGGACAGGAAAATC
TCGGGAGAAGAAGGGGGAGGGGTAGCTGACGGCTTGTCTGCTGTGGCTGC
CACGAAAGACGCCAAGGACAAGGACAAGGACGATGACAACGACAACGGAG
GGGGAGATGCAGAGGTGGCGAGTGGCGGAAACAAGGAGGGCGATGCGGCT
GCGGAGGAAGAGGAGGACGAGGTGGCGAGTGGCGGAAACAAGGAGGGCGA
TGCGGCTGCGGAGGAAGAGGAGGACGAGACGACGGATGGGTTTGTCACAG
CAGACGAGGAAGAGGAGGACTCGGCATCGGAGATGCTAGCAGGCATGGGC
AAAGCGGCCAAAGAAATGAAAAAGAGGGCCAAGGGTAGCCTTGAAAACTT
GAAGAGCGGTCTCGGAGAAGCCACCGGCAGAGGAGATGAGGATGTCCAGG
GGGCTGGGGAGGGCGACTCTCCTCCAAGCCTCCCGAAAGGCGTTGACGGG
GGTAAAGTTGACGTGTCGTACGTTTGAACGACGGATGGGTTTGTCACAGC
AGACGAGGAAGAGGAGGACTCGGCATCGGAGATGCTAGCAGGCATGGGCA
AAGCGGCCAAAGAAATGAAAAAGAGGGCCAAGGGTAGCCTTGAAAACTTG
AAGAGCGGTCTCGGAGAAGCCACCGGCAGAGGAGATGAGGATGTCCAGGG
GGCTGGGGAGGGCGACTCTCCTCCAAGCCTCCCGAAAGGCGTTGACGGGG
GTAAAGTTGACGTGTCGTACGTTTGA back to top
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