mRNA_E-siliculosus-1a_F_contig13676.2194.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13676.2194.1
Unique NamemRNA_E-siliculosus-1a_F_contig13676.2194.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: D7G0Q0_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q0_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 3.420e-36
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
Query:   22 WRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEK 216
            WRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEK
Sbjct:  313 WRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEK 377          
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A7S2UT53_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT53_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.930e-34
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESE 213
            VLNDFYE+RF+PL +P PTL  D+R L+NNRELSDVTFIVDGFPVYASR HLA+RSEHFRAMLYGGMRES+
Sbjct:   34 VLNDFYEYRFEPLNIPGPTLINDLRSLINNRELSDVTFIVDGFPVYASRAHLAVRSEHFRAMLYGGMRESQ 104          
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A7S2WPN5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPN5_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.730e-25
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
            VLND+YE+R +P+ +P  T   DMR LVNNRELSDVTF+V+G  VYASR+HLA RSEHFRAML+GGMRES
Sbjct:  337 VLNDYYEYRLEPVWIPESTYVTDMRTLVNNRELSDVTFLVEGQAVYASRIHLAARSEHFRAMLFGGMRES 406          
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A7R9UG27_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG27_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.640e-24
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
            VLNDFYE+RFQ L + P     +MR LVNN+  SDVTFIVDG P+YA+R HLA R EHFRAMLYG MRE+
Sbjct:   47 VLNDFYEYRFQHLSIAPSAFLSEMRSLVNNQMFSDVTFIVDGIPIYATRAHLAARCEHFRAMLYGEMREA 116          
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A835YYB0_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB0_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.670e-23
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1
Query:   31 QPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESE 213
            +PLLVPP TL  D+R +VN RELSDVTF+VDGFPV+ASR HLA RSEHFRAMLYGG+RES+
Sbjct:  331 EPLLVPPSTLAADLRGMVNCRELSDVTFLVDGFPVFASRAHLAARSEHFRAMLYGGLRESQ 391          
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A8J9S1L4_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S1L4_PHATR)

HSP 1 Score: 90.9 bits (224), Expect = 8.580e-21
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
            VLNDFY++R +P+L+PPPTL  D  +++NN +LSDV F+V+G  V+A R  LA RSE+FR ML GGMRES
Sbjct:   41 VLNDFYKFRLKPILMPPPTLVNDFSRMINNPDLSDVRFLVEGKDVFAHRSVLAFRSEYFRVMLCGGMRES 110          
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: B7FP97_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP97_PHATC)

HSP 1 Score: 90.9 bits (224), Expect = 9.940e-20
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
            VLNDFY++R +P+L+PPPTL  D  +++NN +LSDV F+V+G  V+A R  LA RSE+FR ML GGMRES
Sbjct:  307 VLNDFYKFRLKPILMPPPTLVNDFSRMINNPDLSDVRFLVEGKDVFAHRSVLAFRSEYFRVMLCGGMRES 376          
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A7S1U372_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U372_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.550e-19
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1
Query:   34 PLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
            P+ +PP +L  D+R L+NN++ SDVTFIV G PVYA+R HLA RSEHFRAMLYGGMRE+
Sbjct:  331 PVAIPPSSLVADLRSLINNKDFSDVTFIVGGEPVYATRAHLAARSEHFRAMLYGGMREA 389          
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A6U6MZ52_9DINO (Hypothetical protein n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6U6MZ52_9DINO)

HSP 1 Score: 87.8 bits (216), Expect = 1.250e-18
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 1
Query:   28 FQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
            F+P+L+PP  L +D+RKL+NN   +DVTF+V+   VYA+R HLA RSEHFRA+LYGGMRES
Sbjct:  331 FEPVLIPPSILMDDLRKLINNPMFADVTFLVENQTVYATRAHLASRSEHFRALLYGGMRES 391          
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: B8C0A8_THAPS (BTB domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0A8_THAPS)

HSP 1 Score: 85.5 bits (210), Expect = 8.180e-18
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
            VLNDFY++R +P+ +PP  L  D+R+L+   ++SDVTFIV+G  V+A+R  LA+RSE+F  ML+GGMRES
Sbjct:  283 VLNDFYKFRLKPVSIPPSALVSDLRRLMIREDMSDVTFIVEGQEVFANRALLAVRSEYFDVMLFGGMRES 352          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Q0_ECTSI3.420e-36100.00BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2UT53_9STRA1.930e-3481.69Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WPN5_9STRA1.730e-2571.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9UG27_9STRA1.640e-2467.14Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835YYB0_9STRA3.670e-2377.05BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A8J9S1L4_PHATR8.580e-2160.00Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7FP97_PHATC9.940e-2060.00Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S1U372_9STRA3.550e-1967.80Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U6MZ52_9DINO1.250e-1863.93Hypothetical protein n=2 Tax=Brandtodinium nutricu... [more]
B8C0A8_THAPS8.180e-1855.71BTB domain-containing protein n=1 Tax=Thalassiosir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13676contigE-siliculosus-1a_F_contig13676:922..1137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size216
Model size216
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelBacillariophyta
COG Functional cat.S
EggNOG OGs29I5W@1,2RRCX@2759,2XB7R@2836
EggNOG free text desc.Kelch motif
Seed eggNOG ortholog2850.Phatr9490
Seed ortholog evalue2e-16
Seed ortholog score91.3
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927884.3354356-CDS-E-siliculosus-1a_F_contig13676:921..11371622927884.3354356-CDS-E-siliculosus-1a_F_contig13676:921..1137Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13676 922..1137 -
1696318721.9727335-CDS-E-siliculosus-1a_F_contig13676:921..11371696318721.9727335-CDS-E-siliculosus-1a_F_contig13676:921..1137Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13676 922..1137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13676.2194.1prot_E-siliculosus-1a_F_contig13676.2194.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13676 922..1137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13676.2194.1

>prot_E-siliculosus-1a_F_contig13676.2194.1 ID=prot_E-siliculosus-1a_F_contig13676.2194.1|Name=mRNA_E-siliculosus-1a_F_contig13676.2194.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=72bp
VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRV
HLALRSEHFRAMLYGGMRESEK
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mRNA from alignment at E-siliculosus-1a_F_contig13676:922..1137-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13676.2194.1 ID=mRNA_E-siliculosus-1a_F_contig13676.2194.1|Name=mRNA_E-siliculosus-1a_F_contig13676.2194.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13676:922..1137- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCCTGAACGACTTCTACGAGTGGAGATTCCAGCCGTTGCTGGTCCCGCC GCCCACCCTGCAGGAGGACATGCGGAAGCTGGTGAACAACCGGGAGCTGA GCGACGTGACGTTCATCGTGGACGGCTTCCCCGTGTACGCCAGCCGAGTT CACCTCGCCCTCCGGTCCGAGCACTTCCGAGCGATGCTGTACGGTGGCAT GCGGGAGAGCGAGAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13676:922..1137-

>mRNA_E-siliculosus-1a_F_contig13676.2194.1 ID=mRNA_E-siliculosus-1a_F_contig13676.2194.1|Name=mRNA_E-siliculosus-1a_F_contig13676.2194.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13676:922..1137- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCCTGAACGACTTCTACGAGTGGAGATTCCAGCCGTTGCTGGTCCCGCC
GCCCACCCTGCAGGAGGACATGCGGAAGCTGGTGAACAACCGGGAGCTGA
GCGACGTGACGTTCATCGTGGACGGCTTCCCCGTGTACGCCAGCCGAGTT
CACCTCGCCCTCCGGTCCGAGCACTTCCGAGCGATGCTGTACGGTGGCAT
GCGGGAGAGCGAGAAGGTCCTGAACGACTTCTACGAGTGGAGATTCCAGC
CGTTGCTGGTCCCGCCGCCCACCCTGCAGGAGGACATGCGGAAGCTGGTG
AACAACCGGGAGCTGAGCGACGTGACGTTCATCGTGGACGGCTTCCCCGT
GTACGCCAGCCGAGTTCACCTCGCCCTCCGGTCCGAGCACTTCCGAGCGA
TGCTGTACGGTGGCATGCGGGAGAGCGAGAAG
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