mRNA_E-siliculosus-1a_F_contig1367.2193.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2193.1 vs. uniprot
Match: A0A6H5JHB6_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHB6_9PHAE) HSP 1 Score: 280 bits (715), Expect = 2.870e-88 Identity = 143/148 (96.62%), Postives = 143/148 (96.62%), Query Frame = 1
Query: 1 GDAAKVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDGGLDGFIDAALIAEHSKGGEEGR 444
GDAAKVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLD FIDAALIAEHSKGGEEGR
Sbjct: 320 GDAAKVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDXXXXXFIDAALIAEHSKGGEEGR 467
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2193.1 vs. uniprot
Match: A0A836CNE1_9STRA (Peptide chain release factor 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNE1_9STRA) HSP 1 Score: 180 bits (457), Expect = 7.260e-51 Identity = 85/131 (64.89%), Postives = 108/131 (82.44%), Query Frame = 1
Query: 19 EIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDGGLDGFIDAALI 411
++P DL+V+TMR+QGAGGQHVNTTDSAVRLTHLPTG+ + QSDRSQH+N E+A+R LR K+ REE ER A R + A LG NA+G+QIRSYV +PYQMVKDHRTG + DV+GV+DG +DGF+++AL+
Sbjct: 233 DLPPGDLRVETMRSQGAGGQHVNTTDSAVRLTHLPTGITVMCQSDRSQHRNHESALRQLRGKLLAREEAERAAARAQQRASLGANAWGSQIRSYVFAPYQMVKDHRTGHKTADVAGVMDGDIDGFVESALL 363
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2193.1 vs. uniprot
Match: H3GA21_PHYRM (RF_PROK_I domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA21_PHYRM) HSP 1 Score: 176 bits (445), Expect = 8.320e-49 Identity = 82/133 (61.65%), Postives = 106/133 (79.70%), Query Frame = 1
Query: 13 KVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDGGLDGFIDAALI 411
++EIP KDL++DT R+ G GGQHVN+TDSA+R+THLPTG+V SQSDRSQH+N+ A+ LRAK++QR+ EE KR ++A GLGDNA+GNQIRSYVL PYQMVKDHRT E + + VLDG +D F++ L+
Sbjct: 248 EIEIPTKDLRIDTFRSSGPGGQHVNSTDSAIRITHLPTGIVVQSQSDRSQHRNKAEALAMLRAKLYQRKLEEEALKRQQFAQGLGDNAWGNQIRSYVLHPYQMVKDHRTNYSETNTAQVLDGDIDQFVEKMLL 380
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2193.1 vs. uniprot
Match: A0A662WW55_9STRA (RF_PROK_I domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW55_9STRA) HSP 1 Score: 177 bits (448), Expect = 1.400e-48 Identity = 85/137 (62.04%), Postives = 108/137 (78.83%), Query Frame = 1
Query: 1 GDAAKVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDGGLDGFIDAALI 411
G VE+PAKDL+VDT R+ G GGQHVN+TDSA+R+THLP+G+V SQSDRSQH+N+ A+ LRAK++QRE +E+ R+ +A GLGDNA+GNQIRSYVL PYQ+VKDHRT EG+ VLDGG+D FI+ L+
Sbjct: 306 GSRQDVELPAKDLRVDTFRSSGPGGQHVNSTDSAIRITHLPSGIVVQSQSDRSQHRNKAEALAMLRAKLYQRELDEQARARHAFAQGLGDNAWGNQIRSYVLHPYQLVKDHRTNYAEGNTKLVLDGGIDRFIEEMLL 442
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2193.1 vs. uniprot
Match: A0A2P4XMB8_9STRA (Peptide chain release factor n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMB8_9STRA) HSP 1 Score: 170 bits (431), Expect = 1.520e-48 Identity = 81/142 (57.04%), Postives = 106/142 (74.65%), Query Frame = 1
Query: 16 VEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDGGLDGFIDAALIAEHSKGGEEG 441
+EI KDL++DT R+ G GGQHVN+TDSA+R+THLPTG+V SQSDRSQH+N+ AM LRAK++QR+ +E R ++A GLG+NA+GNQIRSYVL PYQ+VKDHRT EG+ VLDG +D FI+ L+ + +G
Sbjct: 85 IEILTKDLRIDTFRSSGPGGQHVNSTDSAIRITHLPTGIVVQSQSDRSQHRNKAEAMAMLRAKLYQRKLDEEVQSRQKFAQGLGENAWGNQIRSYVLHPYQLVKDHRTNYSEGNTGQVLDGDIDHFIEKMLLHHAASNNPDG 226
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2193.1 vs. uniprot
Match: A0A421GPH8_9STRA (RF_PROK_I domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GPH8_9STRA) HSP 1 Score: 173 bits (438), Expect = 3.650e-48 Identity = 82/139 (58.99%), Postives = 107/139 (76.98%), Query Frame = 1
Query: 1 GDAAKVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDGGLDGFIDAALIAE 417
G ++EI KDL++DT R+ G GGQHVNTTDSA+R+THLPTG+V SQSDRSQH+N+ A+ LRAK++QRE E++ KR ++ GLGDNA+G+QIRSYVL PYQMVKDHRT E + + VLDG +D FI+ L+ +
Sbjct: 205 GSKQEIEISTKDLRIDTFRSSGPGGQHVNTTDSAIRITHLPTGIVVQSQSDRSQHRNKAEALAMLRAKLYQRELEDQARKRQQFTQGLGDNAWGSQIRSYVLHPYQMVKDHRTNYSESNTALVLDGDIDQFIEKMLLQQ 343
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2193.1 vs. uniprot
Match: D0NMN6_PHYIT (Peptide chain release factor, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NMN6_PHYIT) HSP 1 Score: 173 bits (438), Expect = 6.350e-48 Identity = 84/146 (57.53%), Postives = 112/146 (76.71%), Query Frame = 1
Query: 10 AKVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDGGLDGFIDAALIAEHSKGG-EEGR 444
A++E+ KDL++DT R+ G GGQHVN+TDSA+R+THL TG+V SQSDRSQH+N+ AM LRAK++QR+ EE R ++A GLGDNA+GNQIRSYVL PYQ+VKDHRT EG+++ VLDG +D FI+ L+ + + +EGR
Sbjct: 233 AEIEVSTKDLRIDTFRSSGPGGQHVNSTDSAIRITHLRTGIVVQSQSDRSQHRNKAEAMAMLRAKLYQRKLEEEAKARQKFAQGLGDNAWGNQIRSYVLHPYQLVKDHRTNYSEGNIAQVLDGDIDRFIEKMLLHQTAPNNPDEGR 378
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2193.1 vs. uniprot
Match: W2QJH8_PHYPN (Peptide chain release factor 2 n=9 Tax=Phytophthora TaxID=4783 RepID=W2QJH8_PHYPN) HSP 1 Score: 174 bits (441), Expect = 1.010e-47 Identity = 82/136 (60.29%), Postives = 107/136 (78.68%), Query Frame = 1
Query: 10 AKVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDGGLDGFIDAALIAE 417
A++E+ KDL++DT R+ G GGQHVN+TDSA+R+THLPTG+V SQSDRSQH+N+ AM LRAK++QR+ EE R ++A GLGDNA+GNQIRSYVL PYQ+VKDHRT EG+ + VLDG +D FI+ L+ +
Sbjct: 302 AEIEVSNKDLRIDTFRSSGPGGQHVNSTDSAIRITHLPTGIVVQSQSDRSQHRNKAEAMAILRAKLYQRKLEEEARARQQFAQGLGDNAWGNQIRSYVLHPYQLVKDHRTNYSEGNTAQVLDGDIDQFIEKMLLQQ 437
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2193.1 vs. uniprot
Match: G4ZDJ3_PHYSP (RF_PROK_I domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZDJ3_PHYSP) HSP 1 Score: 174 bits (441), Expect = 1.140e-47 Identity = 81/142 (57.04%), Postives = 110/142 (77.46%), Query Frame = 1
Query: 13 KVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDGGLDGFIDAALIAEHSKGGEE 438
++EI KDL++DT R+ GAGGQHVNTTDSA+R+THLPTG+V SQS+RSQH+N+ A+ LRAK++QR+ +E K+ ++A GLG+NA+GNQIRSYVL PYQ+VKDHRT EG+ + VLDG +D FI+ L+ + + E
Sbjct: 307 EIEISTKDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVQSQSERSQHRNKAEALAVLRAKLYQRKLDEEARKKQQFAQGLGENAWGNQIRSYVLYPYQLVKDHRTNYSEGNTAQVLDGDIDHFIEKMLLHQAASSSNE 448
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2193.1 vs. uniprot
Match: A0A2P4X072_9STRA (Peptide chain release factor 2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X072_9STRA) HSP 1 Score: 169 bits (428), Expect = 2.520e-47 Identity = 80/132 (60.61%), Postives = 103/132 (78.03%), Query Frame = 1
Query: 16 VEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQREEEERHAKRNEYAAGLGDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDGGLDGFIDAALI 411
+EI KDL++DT R+ G GGQHVN+TDSA+R+THLPTG+V SQSDRSQH+N+ AM LRAK++QR+ +E R ++A GLG+NA+GNQIRSYVL PYQ+VKDHRT EG+ VLDG +D FI+ L+
Sbjct: 148 IEILTKDLRIDTFRSSGPGGQHVNSTDSAIRITHLPTGIVVQSQSDRSQHRNKAEAMAMLRAKLYQRKLDEEVQSRQKFAQGLGENAWGNQIRSYVLHPYQLVKDHRTNYSEGNTGQVLDGDIDHFIEKMLL 279 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1367.2193.1 >prot_E-siliculosus-1a_F_contig1367.2193.1 ID=prot_E-siliculosus-1a_F_contig1367.2193.1|Name=mRNA_E-siliculosus-1a_F_contig1367.2193.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=132bp MRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAback to top mRNA from alignment at E-siliculosus-1a_F_contig1367:31148..32719- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1367.2193.1 ID=mRNA_E-siliculosus-1a_F_contig1367.2193.1|Name=mRNA_E-siliculosus-1a_F_contig1367.2193.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1572bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1367:31148..32719- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1367:31148..32719- >mRNA_E-siliculosus-1a_F_contig1367.2193.1 ID=mRNA_E-siliculosus-1a_F_contig1367.2193.1|Name=mRNA_E-siliculosus-1a_F_contig1367.2193.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=792bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1367:31148..32719- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |