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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2192.1 vs. uniprot
Match: D8LKZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKZ8_ECTSI) HSP 1 Score: 525 bits (1351), Expect = 1.390e-183 Identity = 311/333 (93.39%), Postives = 313/333 (93.99%), Query Frame = 3
Query: 57 MSFNRGAVVSVQYRDRAWDIKLNSAVNTACLERDTATLALELQAALHLSTPPVGLRLCVAPGAQAVICPLSAVIACPSYIAT-YQGMSWFPLLEGGGDDHQEAPPNVPPATPQTQLPGPSSDDPLLPPPLGSPLDHELSFLATGGGFTASPSEGCGRPLTAPPGDRTRGMTGPRPGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHSGSPAWGSPHGFRCEDTTTTTPEDAGARRPATAPALRRQPSSNLSGSRNENGAFGERFGRGGSVEANEETGGVAAAHHGPMPDGGGLGEDGRAVGGDADWGWCGVGPARECWA 1052
MSFNRGAVVSVQY D AWDIKLN A NTACLERDTATLALELQAAL+LSTPPVGLRL VAPGAQAVICPLSAVIACPSYIAT YQGMSWFPLLEGGGDDHQEAPPN PPA PQTQLP P SDDPLLPPPLGSPLDHELSFLATGGGFTASPSEGCGRPLTAPPGDRTRGMT P PGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHSGSPAWGSPHGFRCE+TTTTT EDAGARRPATAPALRRQPSSNLSGSRNENG FGERFGRGGSVE NEETGGVAAAHH PMPDGGGLG DGRAVGGD DWGWCG GP RECWA
Sbjct: 1 MSFNRGAVVSVQYGDCAWDIKLNLAANTACLERDTATLALELQAALNLSTPPVGLRLRVAPGAQAVICPLSAVIACPSYIATAYQGMSWFPLLEGGGDDHQEAPPNAPPAAPQTQLPAPPSDDPLLPPPLGSPLDHELSFLATGGGFTASPSEGCGRPLTAPPGDRTRGMTRPHPGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHSGSPAWGSPHGFRCEETTTTTAEDAGARRPATAPALRRQPSSNLSGSRNENGVFGERFGRGGSVEVNEETGGVAAAHHRPMPDGGGLGGDGRAVGGDVDWGWCGAGPTRECWA 333
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 999 |
| Model size | 1421 |
| Exons | 3 |
| Ec32 ortholog | Ec-11_006150.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927883.511227-CDS-E-siliculosus-1a_F_contig1367:28636..28889 | 1622927883.511227-CDS-E-siliculosus-1a_F_contig1367:28636..28889 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1367 28637..28889 + |
| 1696318721.8863735-CDS-E-siliculosus-1a_F_contig1367:28636..28889 | 1696318721.8863735-CDS-E-siliculosus-1a_F_contig1367:28636..28889 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1367 28637..28889 + |
| 1622927883.5228958-CDS-E-siliculosus-1a_F_contig1367:29511..30257 | 1622927883.5228958-CDS-E-siliculosus-1a_F_contig1367:29511..30257 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1367 29512..30257 + |
| 1696318721.8954418-CDS-E-siliculosus-1a_F_contig1367:29511..30257 | 1696318721.8954418-CDS-E-siliculosus-1a_F_contig1367:29511..30257 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1367 29512..30257 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1367.2192.1 >prot_E-siliculosus-1a_F_contig1367.2192.1 ID=prot_E-siliculosus-1a_F_contig1367.2192.1|Name=mRNA_E-siliculosus-1a_F_contig1367.2192.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=333bp
MSFNRGAVVSVQYRDRAWDIKLNSAVNTACLERDTATLALELQAALHLST
PPVGLRLCVAPGAQAVICPLSAVIACPSYIATYQGMSWFPLLEGGGDDHQ
EAPPNVPPATPQTQLPGPSSDDPLLPPPLGSPLDHELSFLATGGGFTASP
SEGCGRPLTAPPGDRTRGMTGPRPGRREGLGRPMSATPSDKSFGMRRIRP
GKSEGFGRPVTALPSDHSHSGSPAWGSPHGFRCEDTTTTTPEDAGARRPA
TAPALRRQPSSNLSGSRNENGAFGERFGRGGSVEANEETGGVAAAHHGPM
PDGGGLGEDGRAVGGDADWGWCGVGPARECWA* back to topmRNA from alignment at E-siliculosus-1a_F_contig1367:28077..30623+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1367.2192.1 ID=mRNA_E-siliculosus-1a_F_contig1367.2192.1|Name=mRNA_E-siliculosus-1a_F_contig1367.2192.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2547bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1367:28077..30623+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGTGACGCAAGCTTGAGAGAAGGGCTGTACAACGGAGTCACCCAGGTTC
GTGCTTGTGGTCGAGTTAGCCTAAGGTGGCAGTTGGATCGGGAGGGCGTC
GGTAAAGGGAGACCGTGCATGTGGAAGGAAATCCTTGCAAAAATTCAGAA
CCTTCAGGGATCTTTGCTATGCAGAATGCTTCTCCGCCCGAGGATCGGAG
TTGGATCTCTCTCCTACGCGCGCACGAGCTTAGATGCTGCTTTCAAGCCA
CATGGCTCAGCCGAACCATGCTTTGGACTTGTGCAATATGTGAAGCCTTT
GCCTTCTCTCCCAAAGCAGATCCCGGCAAACGAATGTATGTAGGGCTGTA
TATGGTCCCTTCAAACTCATGGTATCATCCAGGCCAAACACGCACGGAGT
ATGTATGTAGAAGCGCCGTGCGTGGTGTGCACTACATGCTGTTGCTGAGG
GTGACCTTCCAACCGCATGATGTACCTCTTTCTCTTTCCTCACTCGGCAA
AACCAATTACCGGTTGCCCCCCAACTTCACTGCGCCGCGCAACTCGCCAG
AAAAAAGGTCATGTCATTCAACAGGGGTGCCGTGGTTTCAGTACAGTACC
GGGACCGCGCATGGGACATCAAGCTCAACTCGGCGGTAAACACCGCGTGT
CTTGAAAGAGACACCGCCACCTTAGCTCTAGAGCTACAAGCTGCACTACA
CCTCAGCACGCCTCCGGTTGGGCTGAGGCTATGCGTGGCACCCGGCGCTC
AAGCAGTGATTTGTCCGCTGAGCGCCGTGATCGCGTGTCCGTCGTACATC
GCCACCTATCAAGGTGAGTTTTGGAAATGCTTTCTCACTTCTCAAGCAAC
CCCGCTAACCGCTCCATGCGTACGCAAGGATGAACCGGCGTGGCGTTTTT
CTGATACCCCTTTTTTTTTTCTGGTTGTTCGGATTGTTGCACCCTGCTCC
TATGCATATGCTCCTCCCAACCGACCGAAGGTTCAACAACAGCATAGACT
GTAGTCTAGATGGGTAGATTATTTGCCGACAACATGCCAGGATATGTACA
ACAGCAGTCGGGTAAAATAATTCCAGATTCCCTTCCCGGGAAAGACTGTG
GAGGATACGAATACTGTTCAGTACAAAAACCACTGAAAATTCTGCCTGTG
CTCCTCTTCACGTTTTTTGTGCCTCTCGCTACATGTATGTACGTGTACGA
AGGAAGAGCAGCAGGGTAGGTCTTGCATTCCCCGGCCAAGCCCAGGTTTT
ATCCGTTCATCGTCCCTCCTTGACATCGCGCTTCACTCAGCAGCAGCAGC
TGCAGCCAACAGGAGTCCTTGTTGTGTTTTTCATCTGGTAGGGGTGTAGT
CGTAAACGTACGAGACCTCGCACCCAAAAAAAGAATCCGAAGGAAGCATG
AACAACTTCGCCCTTCCCTGAATCGACCAAAACAGGCATGTCTTGGTTCC
CGCTGCTGGAAGGGGGAGGCGATGACCACCAAGAAGCACCACCCAATGTA
CCACCAGCAACACCGCAAACCCAACTGCCAGGGCCCTCCTCGGACGACCC
TCTCCTACCCCCACCTCTGGGGTCACCGCTGGATCACGAACTGTCCTTCC
TAGCGACCGGAGGAGGATTCACGGCGTCTCCCTCGGAGGGGTGCGGCCGC
CCGCTCACGGCGCCCCCCGGCGACCGCACGCGGGGAATGACGGGGCCGCG
CCCGGGCCGTCGAGAGGGCCTCGGCAGACCCATGTCGGCCACGCCCAGCG
ACAAGAGCTTCGGGATGCGGCGGATCCGCCCGGGAAAGAGCGAGGGCTTC
GGAAGGCCCGTCACGGCGCTCCCCAGCGACCACAGCCACAGCGGCAGCCC
CGCGTGGGGAAGTCCCCACGGATTCCGGTGCGAAGACACTACCACCACCA
CCCCAGAGGACGCTGGTGCGCGCCGGCCGGCCACTGCTCCCGCGCTTCGG
CGACAGCCCTCCTCGAATCTCAGCGGCTCGCGGAATGAGAACGGGGCGTT
CGGCGAGCGGTTCGGACGAGGGGGGTCTGTGGAGGCGAACGAGGAGACGG
GAGGGGTGGCTGCGGCGCATCATGGACCGATGCCCGATGGCGGTGGCCTA
GGGGAAGATGGTCGTGCGGTGGGCGGTGACGCCGACTGGGGATGGTGTGG
AGTAGGTCCGGCCAGGGAGTGTTGGGCGTGACGGGTCGTTCCGAGTGACT
GCTGCGTACATACCAAGCCGTGTAGGATTGAGCGTGAGTGTAGCAGCGTG
AAGTGCACCAGCCCTGAATAGGCATCAGGTACGTAAGCAGGTAGGATCGC
CAATAGAAGGACACGTACAGTTTCCACGCGAAGTGCAGTATTTACCCCCA
TTTGTTGTGTGTGCCTGTGCTGTGACCATGAGGGGCCAATAGTGTGATGA
GCCGAAGTCGTCTACAAAAGGAAGAATATGTTTTGCTGCACGTGCCAGCT
GGCTAATGATCTACGGGGCCTCTGAGGGCTACGTGGATGATGTTGGTGGG
TATGATTGAATGAGTGATGTCACGAGCGAGGTCCTCCTTGCCTCACC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1367:28077..30623+ >mRNA_E-siliculosus-1a_F_contig1367.2192.1 ID=mRNA_E-siliculosus-1a_F_contig1367.2192.1|Name=mRNA_E-siliculosus-1a_F_contig1367.2192.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1998bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1367:28077..30623+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCATTCAACAGGGGTGCCGTGGTTTCAGTACAGTACCGGGACCGCGC
ATGGGACATCAAGCTCAACTCGGCGGTAAACACCGCGTGTCTTGAAAGAG
ACACCGCCACCTTAGCTCTAGAGCTACAAGCTGCACTACACCTCAGCACG
CCTCCGGTTGGGCTGAGGCTATGCGTGGCACCCGGCGCTCAAGCAGTGAT
TTGTCCGCTGAGCGCCGTGATCGCGTGTCCGTCGTACATCGCCACCTATC
AAGATGTCATTCAACAGGGGTGCCGTGGTTTCAGTACAGTACCGGGACCG
CGCATGGGACATCAAGCTCAACTCGGCGGTAAACACCGCGTGTCTTGAAA
GAGACACCGCCACCTTAGCTCTAGAGCTACAAGCTGCACTACACCTCAGC
ACGCCTCCGGTTGGGCTGAGGCTATGCGTGGCACCCGGCGCTCAAGCAGT
GATTTGTCCGCTGAGCGCCGTGATCGCGTGTCCGTCGTACATCGCCACCT
ATCAAGGCATGTCTTGGTTCCCGCTGCTGGAAGGGGGAGGCGATGACCAC
CAAGAAGCACCACCCAATGTACCACCAGCAACACCGCAAACCCAACTGCC
AGGGCCCTCCTCGGACGACCCTCTCCTACCCCCACCTCTGGGGTCACCGC
TGGATCACGAACTGTCCTTCCTAGCGACCGGAGGAGGATTCACGGCGTCT
CCCTCGGAGGGGTGCGGCCGCCCGCTCACGGCGCCCCCCGGCGACCGCAC
GCGGGGAATGACGGGGCCGCGCCCGGGCCGTCGAGAGGGCCTCGGCAGAC
CCATGTCGGCCACGCCCAGCGACAAGAGCTTCGGGATGCGGCGGATCCGC
CCGGGAAAGAGCGAGGGCTTCGGAAGGCCCGTCACGGCGCTCCCCAGCGA
CCACAGCCACAGCGGCAGCCCCGCGTGGGGAAGTCCCCACGGATTCCGGT
GCGAAGACACTACCACCACCACCCCAGAGGACGCTGGTGCGCGCCGGCCG
GCCACTGCTCCCGCGCTTCGGCGACAGCCCTCCTCGAATCTCAGCGGCTC
GCGGAATGAGAACGGGGCGTTCGGCGAGCGGTTCGGACGAGGGGGGTCTG
TGGAGGCGAACGAGGAGACGGGAGGGGTGGCTGCGGCGCATCATGGACCG
ATGCCCGATGGCGGTGGCCTAGGGGAAGATGGTCGTGCGGTGGGCGGTGA
CGCCGACTGGGGATGGTGTGGAGTAGGTCCGGCCAGGGAGTGTTGGGCGT
GAGCATGTCTTGGTTCCCGCTGCTGGAAGGGGGAGGCGATGACCACCAAG
AAGCACCACCCAATGTACCACCAGCAACACCGCAAACCCAACTGCCAGGG
CCCTCCTCGGACGACCCTCTCCTACCCCCACCTCTGGGGTCACCGCTGGA
TCACGAACTGTCCTTCCTAGCGACCGGAGGAGGATTCACGGCGTCTCCCT
CGGAGGGGTGCGGCCGCCCGCTCACGGCGCCCCCCGGCGACCGCACGCGG
GGAATGACGGGGCCGCGCCCGGGCCGTCGAGAGGGCCTCGGCAGACCCAT
GTCGGCCACGCCCAGCGACAAGAGCTTCGGGATGCGGCGGATCCGCCCGG
GAAAGAGCGAGGGCTTCGGAAGGCCCGTCACGGCGCTCCCCAGCGACCAC
AGCCACAGCGGCAGCCCCGCGTGGGGAAGTCCCCACGGATTCCGGTGCGA
AGACACTACCACCACCACCCCAGAGGACGCTGGTGCGCGCCGGCCGGCCA
CTGCTCCCGCGCTTCGGCGACAGCCCTCCTCGAATCTCAGCGGCTCGCGG
AATGAGAACGGGGCGTTCGGCGAGCGGTTCGGACGAGGGGGGTCTGTGGA
GGCGAACGAGGAGACGGGAGGGGTGGCTGCGGCGCATCATGGACCGATGC
CCGATGGCGGTGGCCTAGGGGAAGATGGTCGTGCGGTGGGCGGTGACGCC
GACTGGGGATGGTGTGGAGTAGGTCCGGCCAGGGAGTGTTGGGCGTGA back to top
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