mRNA_E-siliculosus-1a_F_contig13653.2184.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13653.2184.1
Unique NamemRNA_E-siliculosus-1a_F_contig13653.2184.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13653.2184.1 vs. uniprot
Match: A0A5B7SWR5_9FLAO (Uncharacterized protein n=1 Tax=Aggregatimonas sangjinii TaxID=2583587 RepID=A0A5B7SWR5_9FLAO)

HSP 1 Score: 104 bits (259), Expect = 1.220e-27
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 MKTYIVVFVLLVLNTSALLSEPILAFVKGVNLWLFVSVEIVLLVTFYINNQLKGLNEIAKIDLSGIDLFVVDSKNKTQGKS 243
            MKT IV+  L+VLNTSALLSEP+   VKG+N WL V+ EIVLL+  YINNQLKGL+EI+KIDLSGI+LFV+  K KT  KS
Sbjct:    1 MKTSIVLLALIVLNTSALLSEPLAVLVKGINPWLLVAFEIVLLLILYINNQLKGLHEISKIDLSGIELFVIKPKGKTDSKS 81
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BLAST of mRNA_E-siliculosus-1a_F_contig13653.2184.1 vs. uniprot
Match: A0A7K0E7X4_9FLAO (Uncharacterized protein n=1 Tax=Kriegella sp. EG-1 TaxID=2664451 RepID=A0A7K0E7X4_9FLAO)

HSP 1 Score: 89.0 bits (219), Expect = 1.510e-21
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:    1 MKTYIVVFVLLVLNTSALLSEPILAFVKGVNLWLFVSVEIVLLVTFYINNQLKGLNEIAKIDLSGIDLFVVDSKNKTQ 234
            MKT IV+  L++LNTSALLSEP+   VK +N W  V +E+VLL+ FY+NNQL+GLNE+A IDLS I+LFV+  K  ++
Sbjct:    1 MKTSIVLLFLIILNTSALLSEPLAVIVKDLNPWFLVVLEVVLLLFFYLNNQLRGLNELANIDLSDIELFVIKPKKNSK 78
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BLAST of mRNA_E-siliculosus-1a_F_contig13653.2184.1 vs. uniprot
Match: A0A7Y1TNQ8_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y1TNQ8_9FLAO)

HSP 1 Score: 74.3 bits (181), Expect = 8.050e-16
Identity = 34/75 (45.33%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 MKTYIVVFVLLVLNTSALLSEPILAFVKGVNLWLFVSVEIVLLVTFYINNQLKGLNEIAKIDLSGIDLFVVDSKN 225
            MKT I++  L+ +NTSA+L+EPI + +KGVN+WL +S+E +L++ +YIN+ ++ + ++++IDLS + LFVV  K+
Sbjct:    1 MKTSIILIALIFINTSAILAEPIASLLKGVNVWLLLSLEDLLIIGYYINSVVQNIRKVSEIDLSNLKLFVVKKKS 75
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BLAST of mRNA_E-siliculosus-1a_F_contig13653.2184.1 vs. uniprot
Match: A0A5B7TQS7_9FLAO (Uncharacterized protein n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A5B7TQS7_9FLAO)

HSP 1 Score: 59.3 bits (142), Expect = 6.610e-10
Identity = 30/74 (40.54%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:    1 MKTYIVVFVLLVLNTSALLSEPILAFVKGVNLWLFVSVEIVLLVTFYINNQLKGLNEIAKIDLSGIDLFVVDSK 222
            MKT  ++ +L++ NTSALLSE I   V+ +N WLFV++EI+L++ +Y+N  +K + +    D + ++L V  SK
Sbjct:    1 MKTSALLIILILCNTSALLSESISHLVRDINPWLFVALEILLVLGYYLNKTIKEIRQTFDFDCNDLNLLVTKSK 74
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BLAST of mRNA_E-siliculosus-1a_F_contig13653.2184.1 vs. uniprot
Match: A0A5S3PZJ9_9FLAO (Uncharacterized protein n=1 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PZJ9_9FLAO)

HSP 1 Score: 58.5 bits (140), Expect = 1.300e-9
Identity = 28/74 (37.84%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 MKTYIVVFVLLVLNTSALLSEPILAFVKGVNLWLFVSVEIVLLVTFYINNQLKGLNEIAKIDLSGIDLFVVDSK 222
            MKT +++   L+LNT+ L++EP+   VKG+N ++ + VE VL++ ++ N  L+ LN    +D   +++FVV SK
Sbjct:    1 MKTSMIIIAALLLNTTLLVAEPLSTIVKGINPFILIGVEAVLILGYFANKWLRELNRACTLDFGYLNIFVVKSK 74
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13653.2184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5B7SWR5_9FLAO1.220e-2767.90Uncharacterized protein n=1 Tax=Aggregatimonas san... [more]
A0A7K0E7X4_9FLAO1.510e-2157.69Uncharacterized protein n=1 Tax=Kriegella sp. EG-1... [more]
A0A7Y1TNQ8_9FLAO8.050e-1645.33Uncharacterized protein n=1 Tax=Flavobacteriaceae ... [more]
A0A5B7TQS7_9FLAO6.610e-1040.54Uncharacterized protein n=3 Tax=Flavobacteriaceae ... [more]
A0A5S3PZJ9_9FLAO1.300e-937.84Uncharacterized protein n=1 Tax=Maribacter algarum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13653contigE-siliculosus-1a_F_contig13653:307..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size246
Model size246
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927882.46991-CDS-E-siliculosus-1a_F_contig13653:306..5521622927882.46991-CDS-E-siliculosus-1a_F_contig13653:306..552Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13653 307..552 +
1696318721.3162138-CDS-E-siliculosus-1a_F_contig13653:306..5521696318721.3162138-CDS-E-siliculosus-1a_F_contig13653:306..552Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13653 307..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13653.2184.1prot_E-siliculosus-1a_F_contig13653.2184.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13653 307..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13653.2184.1

>prot_E-siliculosus-1a_F_contig13653.2184.1 ID=prot_E-siliculosus-1a_F_contig13653.2184.1|Name=mRNA_E-siliculosus-1a_F_contig13653.2184.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=82bp
MKTYIVVFVLLVLNTSALLSEPILAFVKGVNLWLFVSVEIVLLVTFYINN
QLKGLNEIAKIDLSGIDLFVVDSKNKTQGKS*
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mRNA from alignment at E-siliculosus-1a_F_contig13653:307..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13653.2184.1 ID=mRNA_E-siliculosus-1a_F_contig13653.2184.1|Name=mRNA_E-siliculosus-1a_F_contig13653.2184.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=246bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13653:307..552+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAAACTTACATTGTCGTATTTGTGCTACTTGTCTTAAATACATCTGC
GCTGCTTTCTGAACCCATTTTAGCTTTTGTTAAGGGAGTCAACCTATGGC
TTTTCGTCAGTGTTGAAATCGTATTGTTAGTCACTTTTTATATCAACAAT
CAACTCAAAGGCCTCAATGAAATTGCTAAGATAGATTTGAGCGGTATTGA
TCTTTTTGTAGTGGACTCAAAGAATAAAACTCAGGGAAAATCCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13653:307..552+

>mRNA_E-siliculosus-1a_F_contig13653.2184.1 ID=mRNA_E-siliculosus-1a_F_contig13653.2184.1|Name=mRNA_E-siliculosus-1a_F_contig13653.2184.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13653:307..552+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAAACTTACATTGTCGTATTTGTGCTACTTGTCTTAAATACATCTGC
GCTGCTTTCTGAACCCATTTTAGCTTTTGTTAAGGGAGTCAACCTATGGC
TTTTCGTCAGTGTTGAAATCGTATTGTTAGTCACTTTTTATATCAACAAT
CAACTCAAAGGCCTCAATGAAATTGCTAAGATAGATTTGAGCGGTATTGA
TCTTTTTGTAGTGGACTCAAAGAATAAAACTCAGGGAAAATCCTGAATGA
AAACTTACATTGTCGTATTTGTGCTACTTGTCTTAAATACATCTGCGCTG
CTTTCTGAACCCATTTTAGCTTTTGTTAAGGGAGTCAACCTATGGCTTTT
CGTCAGTGTTGAAATCGTATTGTTAGTCACTTTTTATATCAACAATCAAC
TCAAAGGCCTCAATGAAATTGCTAAGATAGATTTGAGCGGTATTGATCTT
TTTGTAGTGGACTCAAAGAATAAAACTCAGGGAAAATCCTGA
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