mRNA_E-siliculosus-1a_F_contig1365.2181.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1365.2181.1
Unique NamemRNA_E-siliculosus-1a_F_contig1365.2181.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2181.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 3.960e-53
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 1 
Query:    1 MGYKNLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK*F 252
            MGYK+LGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTL GHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK F
Sbjct:    1 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRKGF 84
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2181.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.230e-47
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:    1 MGYKNLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 246
            MGYK+LGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYS DFHPTEPKLVSSSADKTVLIWEPNRKRNSRK
Sbjct:  520 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSTDFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 601
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2181.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA)

HSP 1 Score: 126 bits (317), Expect = 5.730e-34
Identity = 55/84 (65.48%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    1 MGYKNLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNR--KRNSRK 246
            +GY++ G DW HSLVLATGSADG+I+ FD+SKG+G ++QTLRGH DRVY+  FHPTEP+LVS SAD+TV IW P++  +RN RK
Sbjct:   41 IGYEDSGKDWAHSLVLATGSADGNIYTFDMSKGEGGDLQTLRGHNDRVYAVHFHPTEPRLVSGSADQTVRIWGPSKGGRRNGRK 124
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2181.1 vs. uniprot
Match: R7QRT1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRT1_CHOCR)

HSP 1 Score: 82.8 bits (203), Expect = 6.650e-15
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   16 LGNDWQHSLVLATGSADGSIHVFDLS--KGQGDEIQTLRGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNR 228
            +G   Q+SL+LA+GSADG+I +FD+    G G  +QTL GH+DRVY  DFHP EP L S SAD  + IW+  R
Sbjct:  482 IGGPIQNSLILASGSADGNICLFDVGGRPGTGALLQTLEGHKDRVYGVDFHPNEPILASCSADCGIKIWQSFR 554
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2181.1 vs. uniprot
Match: A0A2V3IL28_9FLOR (WD repeat-containing protein 5B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL28_9FLOR)

HSP 1 Score: 82.0 bits (201), Expect = 1.230e-14
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:   13 NLGNDWQHSLVLATGSADGSIHVFDL--SKGQGDEIQTLRGHRDRVYSADFHPTEPKLVSSSADKTVLIW 216
            ++G+  + SLVLA+GSADG+++VFD+  S G G  +QTL GH+D  YS DFHP EP L S SAD  + IW
Sbjct:  483 SIGDAIESSLVLASGSADGNVYVFDVGGSAGTGTLVQTLIGHKDIAYSVDFHPCEPILASCSADSKINIW 552
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2181.1 vs. uniprot
Match: A0A8H7Q4N1_MORIS (GED domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q4N1_MORIS)

HSP 1 Score: 80.5 bits (197), Expect = 3.940e-14
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   31 QHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 246
            + S++LATGS+D  ++++++ +   + +Q L GH DRVY+A+FHPTEP L S SAD T+ +W P   R  +K
Sbjct:  422 EKSVLLATGSSDPYVYLYNIGENTAELMQRLEGHTDRVYAANFHPTEPILASCSADYTIKVWGPGAPRGKKK 493
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2181.1 vs. uniprot
Match: A0A168T094_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168T094_ABSGL)

HSP 1 Score: 79.0 bits (193), Expect = 1.370e-13
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   31 QHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSR 243
            + S++LATGSAD  ++++++ + + + +Q + GH DRVYS +FHPTEP L S SAD TV IW P+ K   +
Sbjct:  439 EKSVLLATGSADPYVYLYNVGEDRSELMQRMEGHTDRVYSVNFHPTEPILASGSADFTVKIWGPSFKSKKK 509
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2181.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV)

HSP 1 Score: 75.5 bits (184), Expect = 2.120e-12
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   40 LVLATGSADGSIHVFDLS-------KGQGDEIQTLRGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKR 234
            ++LATGSAD +I++ D++        G    +Q L GH DRVYS DFHP+EP L S+SAD TV IW P   R
Sbjct:  422 MLLATGSADNTIYLHDVTCRRGYGLNGSTSLLQRLEGHTDRVYSVDFHPSEPILASASADFTVKIWLPRTSR 493
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2181.1 vs. uniprot
Match: A0A2P6MV32_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MV32_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 1.870e-11
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   37 SLVLATGSADGSIHVFDLSKGQGDEI--QTLRGHRDRVYSADFHPTEPKLVSSSADKTVLIW 216
            S +LATGSAD  +++F++S  +G  I  Q L GH D+VYS +FHP +P L S+SAD TV +W
Sbjct:  488 SFLLATGSADSQVYIFNVSGVEGSHILLQRLEGHTDKVYSVNFHPFDPILASASADGTVRLW 549
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2181.1 vs. uniprot
Match: A0A1Y2GT49_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GT49_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 4.770e-11
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   31 QHSLVLATGSADGSIHVFDLSKGQG--DEIQTLRGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKR 234
            + SL+LA+GS D  +++FD+S G G  + +Q L GH DRVY  DFHP +  L S SAD TV +W    KR
Sbjct:  521 ESSLLLASGSMDPYVYLFDVSAGDGQYELLQKLPGHTDRVYDVDFHPIDHVLASGSADFTVKVWGRASKR 590
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LEF6_ECTSI3.960e-5396.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNQ7_9PHAE1.230e-4797.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z281_9STRA5.730e-3465.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R7QRT1_CHOCR6.650e-1553.42Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IL28_9FLOR1.230e-1454.29WD repeat-containing protein 5B n=1 Tax=Gracilario... [more]
A0A8H7Q4N1_MORIS3.940e-1444.44GED domain-containing protein n=1 Tax=Mortierella ... [more]
A0A168T094_ABSGL1.370e-1346.48Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
T0QW05_SAPDV2.120e-1250.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2P6MV32_9EUKA1.870e-1151.61Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A1Y2GT49_9FUNG4.770e-1148.57WD40-repeat-containing domain protein n=1 Tax=Lobo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1365contigE-siliculosus-1a_F_contig1365:2844..4149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size249
Model size620
Exons2
Ec32 orthologEc-00_002100.1
Ec32 ortholog descriptionWD40 repeat
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelAmoebozoa
COG Functional cat.S
EggNOG OGs3XD7W@554915,KOG0266@1,KOG0266@2759
EggNOG free text desc.WD domain, G-beta repeat
KEGG Pathwayko04934,map04934
KEGG koko:K14963
Seed eggNOG ortholog5786.XP_003291002.1
Seed ortholog evalue1.1e-13
Seed ortholog score82.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1365.2181.1prot_E-siliculosus-1a_F_contig1365.2181.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1365 2844..3778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927881.5761096-CDS-E-siliculosus-1a_F_contig1365:2843..29451622927881.5761096-CDS-E-siliculosus-1a_F_contig1365:2843..2945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1365 2844..2945 +
1696318720.8984742-CDS-E-siliculosus-1a_F_contig1365:2843..29451696318720.8984742-CDS-E-siliculosus-1a_F_contig1365:2843..2945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1365 2844..2945 +
1622927881.6098876-CDS-E-siliculosus-1a_F_contig1365:3631..37781622927881.6098876-CDS-E-siliculosus-1a_F_contig1365:3631..3778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1365 3632..3778 +
1696318720.907677-CDS-E-siliculosus-1a_F_contig1365:3631..37781696318720.907677-CDS-E-siliculosus-1a_F_contig1365:3631..3778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1365 3632..3778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927881.6283185-UTR-E-siliculosus-1a_F_contig1365:3778..41491622927881.6283185-UTR-E-siliculosus-1a_F_contig1365:3778..4149Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1365 3779..4149 +
1696318720.9157457-UTR-E-siliculosus-1a_F_contig1365:3778..41491696318720.9157457-UTR-E-siliculosus-1a_F_contig1365:3778..4149Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1365 3779..4149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1365.2181.1

>prot_E-siliculosus-1a_F_contig1365.2181.1 ID=prot_E-siliculosus-1a_F_contig1365.2181.1|Name=mRNA_E-siliculosus-1a_F_contig1365.2181.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp
MGYKNLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYS
ADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1365:2844..4149+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1365.2181.1 ID=mRNA_E-siliculosus-1a_F_contig1365.2181.1|Name=mRNA_E-siliculosus-1a_F_contig1365.2181.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1306bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1365:2844..4149+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGTACAAGAACCTCGGAAACGACTGGCAACACTCGTTGGTGCTGGC
AACCGGAAGCGCGGACGGGAGCATTCACGTCTTCGACTTGTCCAAGGGCC
AGGTCAGTCGGTGTGTTGTGTTGTTGACATCGTCGTCAGTAAAGCAGGCA
ATTGTTGAAACGGACGGGGTGTGATTGTTGCGGGGATAAGGGATTAAGGA
GAAGCTTAGGTTATCTCGGTTGTGTTGGTCTCGATGGAGAGTTCCCGATG
TGGTCGCGAGTTTTTTTTTTTCTGTCGATGGTGCATATTTAGAGCAGGTT
TTCGTGTCCAGAGGGGATGGTTAGAAACAGCCATGAATGCCACCACCAAG
AACCCAAGCATACGTCTTGTAGGGAGGGAGGTGCGCGTCTTTGTCCGATG
ACTCGCTGGATCTTGAGTCGTGGGTTACAAACCAGGGCAAGCCTGACGAC
TACCGTTGTATCAGACACACAGTATTTCGCCGAGTACAGCTTAGCGTGCT
TTCATGTACGGTGGGTGCACACCTGTCTTGGCTCACGCCTCGTTCGTCCC
CCTTTTCCTATCGAGAGGCGTATCTACTGTGTCCTCCGTACCACCACACA
CACGAAGAGTATCGAGCCCGTAGCGAGTTCTCCGGCCTCAAGACAACGCG
CAATAATCGGATAGCTACATACGGCGCAGGAGGTTTGACTATTATACTGC
GATCACGACCCCCCCCCCCCCCCCCTCACAATATTTTTCCCTTTCTCCGG
CCCCCTCATGCCCGGCGTGATGCTTTGACAACACACAGGGCGATGAAATT
CAGACGTTGCGAGGGCACAGAGATAGGGTTTACTCGGCTGACTTCCACCC
CACCGAGCCGAAGCTCGTCTCTTCCAGCGCGGACAAGACTGTTCTGATAT
GGGAGCCGAACAGGAAACGCAACTCACGGAAATGATTTTGATCAGCAGAT
GTGTGAGGGTGCGTGACTTGGCATTTCAGGGAGCAAAACTTGATTTGTGG
ACTACGTAGATCGAGGGTGCTTCGTAGATCTTGATTCAGAGATTTTCGTT
CGTAGAGTTTTCTAATGGGCACAGAAACTCAATCCCCAAGGGGGCTTGAG
AATTAGAGGATCAACAGAATTGATGTACTTGTTAGTTGATAACATGCGCG
CCCGCGCGCTTGTGTCAGCTTCTCCCTGTCTCTTTTTTTGTCTTTTCTCG
AAGACTGTCGACCGGCGGACTCCTGACTGAAAAAGCCTCTCCAACGAATT
GGAAAGCCCCACCAAGGAATTGGATGTGGATGCACGGAAGGGACGTGTGT
CTTCTT
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1365:2844..4149+

>mRNA_E-siliculosus-1a_F_contig1365.2181.1 ID=mRNA_E-siliculosus-1a_F_contig1365.2181.1|Name=mRNA_E-siliculosus-1a_F_contig1365.2181.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1365:2844..4149+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGTACAAGAACCTCGGAAACGACTGGCAACACTCGTTGGTGCTGGC
AACCGGAAGCGCGGACGGGAGCATTCACGTCTTCGACTTGTCCAAGGGCC
AGATGGGGTACAAGAACCTCGGAAACGACTGGCAACACTCGTTGGTGCTG
GCAACCGGAAGCGCGGACGGGAGCATTCACGTCTTCGACTTGTCCAAGGG
CCAGGGCGATGAAATTCAGACGTTGCGAGGGCACAGAGATAGGGTTTACT
CGGCTGACTTCCACCCCACCGAGCCGAAGCTCGTCTCTTCCAGCGCGGAC
AAGACTGTTCTGATATGGGAGCCGAACAGGAAACGCAACTCACGGAAATG
AGGCGATGAAATTCAGACGTTGCGAGGGCACAGAGATAGGGTTTACTCGG
CTGACTTCCACCCCACCGAGCCGAAGCTCGTCTCTTCCAGCGCGGACAAG
ACTGTTCTGATATGGGAGCCGAACAGGAAACGCAACTCACGGAAATGA
back to top