mRNA_E-siliculosus-1a_F_contig1362.2163.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1362.2163.1
Unique NamemRNA_E-siliculosus-1a_F_contig1362.2163.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1362.2163.1 vs. uniprot
Match: A0A6H5L7W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W2_9PHAE)

HSP 1 Score: 557 bits (1436), Expect = 2.030e-195
Identity = 282/289 (97.58%), Postives = 289/289 (100.00%), Query Frame = 3 
Query:  102 MSDLGGASGKPTGTTSREVRRVTNPYLDSRSNNGSSSTAGGIRQMHNRNPSVPSEFGSNAEAAERRRGQAPPPAPGPSSKIQVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRMKELSGHFTLRVLLCHVDVDDSETPMLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSSSRLKRNRTE 968
            MSD+GGASGKPTGTTSREVRRVTNPYLDSRS+NGSSSTAGGIRQMHNRNPSVPSEFGSNAEAAERRRGQAPPPAPGPS+KIQVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQR+KELSGHFTLRVLLCHVDVDDSETP+LEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKV+RIHEALHEPLVRKHSSSRL+RNRTE
Sbjct:    1 MSDVGGASGKPTGTTSREVRRVTNPYLDSRSSNGSSSTAGGIRQMHNRNPSVPSEFGSNAEAAERRRGQAPPPAPGPSNKIQVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRIKELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVSRIHEALHEPLVRKHSSSRLERNRTE 289
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BLAST of mRNA_E-siliculosus-1a_F_contig1362.2163.1 vs. uniprot
Match: D7G4P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P9_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 5.100e-97
Identity = 151/153 (98.69%), Postives = 153/153 (100.00%), Query Frame = 3 
Query:  513 MKELSGHFTLRVLLCHVDVDDSETPMLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSSSRLKRNRTEG 971
            M+ELSGHFTLRVLLCHVDVDDSETP+LEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSSSRLKRNRTEG
Sbjct:   10 MQELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSSSRLKRNRTEG 162
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BLAST of mRNA_E-siliculosus-1a_F_contig1362.2163.1 vs. uniprot
Match: J3N456_ORYBR (HHH_2 domain-containing protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3N456_ORYBR)

HSP 1 Score: 213 bits (543), Expect = 5.260e-60
Identity = 102/206 (49.51%), Postives = 145/206 (70.39%), Query Frame = 3 
Query:  321 APGPSSKIQVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRMKELSGHFTLRVLLCHVDVDDSETPMLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHS 938
            AP P + I V  RQ+ N +L+H+RN  +     +V D+VLG  +CA+++S+RYHLL+P YL  R++EL  +F LRV+LCH+DV+D   P+ E+ + A+ +D TL+  WSL+E  RYLET K YE+KSADSI+E +D+D+L +L      +R VNK+DV+TL SNFGSL  V +A+  EL+ CPG+GE+KV R+H+  HEP  R  S
Sbjct:   94 APAPKNAILVSHRQKGNPLLKHIRNARWTFAD-VVPDYVLGQSSCALYLSVRYHLLHPDYLYYRIRELQKNFKLRVILCHIDVEDVVKPLHEVTRTAILHDCTLLCGWSLEECGRYLETIKVYENKSADSIREHMDNDYLSRLTHALTSIRHVNKTDVVTLGSNFGSLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKRASS 298
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BLAST of mRNA_E-siliculosus-1a_F_contig1362.2163.1 vs. uniprot
Match: A0A835ZCX2_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX2_9STRA)

HSP 1 Score: 206 bits (524), Expect = 5.660e-59
Identity = 98/179 (54.75%), Postives = 134/179 (74.86%), Query Frame = 3 
Query:  387 LRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRMKELSGHFTLRVLLCHVDVDDSETPMLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPL 923
            +RNV +E   G++ DFV+ P  CA+F+S+RYH L P Y+ QR++EL   F LR+LL  VD DD+   +LE+NKMAV  +FTL+LAWS  EAARYLET+KA+E+K   SIQEKV+ D+L K QD    V +VN++DV+TL S FGSL+ +C+A+  E++LCPGLG+KKV  +H+ALH+P 
Sbjct:    7 IRNVEYEFATGIMPDFVISPTACALFLSMRYHQLKPTYIAQRIEELRTSFRLRLLLVLVDQDDNVNLLLELNKMAVARNFTLLLAWSWPEAARYLETFKAFENKPPTSIQEKVNSDYLAKAQDALCTVHAVNRTDVVTLLSTFGSLQGLCEASMEEMALCPGLGDKKVVALHDALHQPF 185
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BLAST of mRNA_E-siliculosus-1a_F_contig1362.2163.1 vs. uniprot
Match: M4FED2_BRARP (Uncharacterized protein n=5 Tax=Brassicaceae TaxID=3700 RepID=M4FED2_BRARP)

HSP 1 Score: 211 bits (537), Expect = 5.830e-59
Identity = 104/204 (50.98%), Postives = 145/204 (71.08%), Query Frame = 3 
Query:  330 PSSKIQVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRMKELSGHFTLRVLLCHVDVDDSETPMLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSS 941
            P + I V  RQ+ N +L+H+RNV + +   ++ D++LG  TCA+++SLRYHLL+P YL  R++EL  +F LRV+LCHVDV+DS  P+LE+ K A+ +D TL+ AWSL E ARYLET K YE+K AD IQ ++D D+L +L      +R VNKSDV+TL S FGSL  + DA+  +L+ CPG+GE+KV R+++  HEP  R  SS
Sbjct:  117 PRNAILVSNRQKGNPLLKHIRNVKW-VFSDIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRAASS 319
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BLAST of mRNA_E-siliculosus-1a_F_contig1362.2163.1 vs. uniprot
Match: A0A6J0NQ48_RAPSA (DNA excision repair protein ERCC-1 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NQ48_RAPSA)

HSP 1 Score: 211 bits (538), Expect = 6.010e-59
Identity = 106/213 (49.77%), Postives = 147/213 (69.01%), Query Frame = 3 
Query:  303 GQAPPPAPGPSSKIQVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRMKELSGHFTLRVLLCHVDVDDSETPMLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSS 941
            G  P     P + I V  RQ+ N +L+H+RNV + +   ++ D++LG  TCA+++SLRYHLL+P YL  R++EL  +F LRV+LCHVDV+DS  P+LE+ K A+ +D TL+ AWSL E ARYLET K YE+K AD IQ ++D D+L +L      +R VNKSDV+TL S FGSL  + DA+  +L+ CPG+GE+KV R+++  HEP  R  SS
Sbjct:  113 GSLPSNTTQPRNAILVSNRQKGNPLLKHIRNVKW-VYSDIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQRNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRAASS 324
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BLAST of mRNA_E-siliculosus-1a_F_contig1362.2163.1 vs. uniprot
Match: A0A1D1ZHX7_9ARAE (DNA excision repair protein ERCC-1 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZHX7_9ARAE)

HSP 1 Score: 207 bits (528), Expect = 7.560e-59
Identity = 99/201 (49.25%), Postives = 143/201 (71.14%), Query Frame = 3 
Query:  342 IQVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRMKELSGHFTLRVLLCHVDVDDSETPMLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSSS 944
            I V  RQ+ N +L+H+RNV +     +V D++LG  +CA++ISLRYHLL+P Y+  R++EL  +F LRV+LCH+DV+D   P+LE+ + A+ +D +L+  WSL+E  RYLET K YE+KSADSI+E++D D+L +L      +R VNK+DV+TL S FGSL  + DA+  EL+ CPG+GE+KV R+++  HEP  R  S S
Sbjct:   16 ILVSHRQKGNPLLKHIRNVRWTFAD-VVCDYLLGQNSCALYISLRYHLLHPDYVYYRIRELQKNFKLRVVLCHIDVEDVAKPLLEVTRTALLHDCSLLCGWSLEECGRYLETIKVYENKSADSIREQMDTDYLSRLTHALTTIRHVNKTDVVTLGSAFGSLSRIMDASMEELARCPGIGERKVQRLYDTFHEPFRRTSSQS 215
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BLAST of mRNA_E-siliculosus-1a_F_contig1362.2163.1 vs. uniprot
Match: A0A0D9XLL6_9ORYZ (HHH_2 domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XLL6_9ORYZ)

HSP 1 Score: 210 bits (535), Expect = 8.750e-59
Identity = 102/207 (49.28%), Postives = 145/207 (70.05%), Query Frame = 3 
Query:  330 PSSKIQVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRMKELSGHFTLRVLLCHVDVDDSETPMLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSSSRL 950
            P + I V  RQ+ N +L+H+RN  +     +V D+VLG  +CA++ISLRYHLL+P YL  R+KEL  +F LRV+LCH+DV+D   P+ E+ + A+ +D TL+  WSL+E  RYLET K YE+KSADSI+E +D+D+L +L      +R VNK+DV+TL S+FGSL  V +A+  EL+ CPG+GE+KV R+H+  HEP  R  S + +
Sbjct:  105 PKNAILVSHRQKGNPLLKHIRNARWTYAD-IVPDYVLGQSSCALYISLRYHLLHPDYLYYRIKELQKNFKLRVILCHIDVEDVVKPLHEVTRTALLHDCTLLCGWSLEECGRYLETIKVYENKSADSIREHMDNDYLSRLTHALTSIRHVNKTDVVTLGSSFGSLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKRASSRTNI 310
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BLAST of mRNA_E-siliculosus-1a_F_contig1362.2163.1 vs. uniprot
Match: A0A078GQT9_BRANA ((rape) hypothetical protein n=6 Tax=Brassicaceae TaxID=3700 RepID=A0A078GQT9_BRANA)

HSP 1 Score: 211 bits (536), Expect = 8.810e-59
Identity = 104/204 (50.98%), Postives = 145/204 (71.08%), Query Frame = 3 
Query:  330 PSSKIQVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRMKELSGHFTLRVLLCHVDVDDSETPMLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSS 941
            P + I V  RQ+ N +L+H+RNV +  +  ++ D++LG  TCA+++SLRYHLL+P YL  R++EL  +F LRV+LCHVDV+DS  P+LE+ K A+ +D TL+ AWSL E ARYLET K YE+K AD IQ ++D D+L +L      +R VNKSDV+TL S FGSL  + DA+  +L+ CPG+GE+KV R+++  HEP  R  SS
Sbjct:  118 PRNAILVSNRQKGNPLLKHIRNVKWVFSE-IIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRAASS 320
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BLAST of mRNA_E-siliculosus-1a_F_contig1362.2163.1 vs. uniprot
Match: A0A5C7I906_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7I906_9ROSI)

HSP 1 Score: 210 bits (535), Expect = 1.020e-58
Identity = 101/196 (51.53%), Postives = 140/196 (71.43%), Query Frame = 3 
Query:  342 IQVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRMKELSGHFTLRVLLCHVDVDDSETPMLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVR 929
            I V  RQ+ N +L+H+RNV +     +V D++LG  +CA+++SLRYHLL+P YL  R++EL  +F LRV+LCH+DVDD   P+LE+ K A+ +D TL+ AWSL+E  RYLET K YE+K AD IQ ++D D+L +L      VRSVNK+DV+TL S FGSL  + DA+  +L+ CPG+GE+KV R+H+  HEP  R
Sbjct:  103 ILVSHRQKGNPLLKHIRNVRWAFAD-VVCDYMLGQNSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHIDVDDVVKPLLEVTKTAMLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDSDYLSRLTHSLTTVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLHDTFHEPFKR 297
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7W2_9PHAE2.030e-19597.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4P9_ECTSI5.100e-9798.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
J3N456_ORYBR5.260e-6049.51HHH_2 domain-containing protein n=1 Tax=Oryza brac... [more]
A0A835ZCX2_9STRA5.660e-5954.75Restriction endonuclease type II-like protein n=1 ... [more]
M4FED2_BRARP5.830e-5950.98Uncharacterized protein n=5 Tax=Brassicaceae TaxID... [more]
A0A6J0NQ48_RAPSA6.010e-5949.77DNA excision repair protein ERCC-1 n=1 Tax=Raphanu... [more]
A0A1D1ZHX7_9ARAE7.560e-5949.25DNA excision repair protein ERCC-1 n=1 Tax=Anthuri... [more]
A0A0D9XLL6_9ORYZ8.750e-5949.28HHH_2 domain-containing protein n=1 Tax=Leersia pe... [more]
A0A078GQT9_BRANA8.810e-5950.98(rape) hypothetical protein n=6 Tax=Brassicaceae T... [more]
A0A5C7I906_9ROSI1.020e-5851.53Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1362contigE-siliculosus-1a_F_contig1362:4976..9196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size873
Model size1757
Exons6
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03019,ko03400,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
CAZyGH47
COG Functional cat.L
EC2.1.1.287,2.7.7.19,3.2.1.113
EggNOG OGsCOG5241@1,KOG2841@2759
EggNOG free text desc.meiotic mismatch repair
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000228,GO:0000280,GO:0000428,GO:0000710,GO:0000712,GO:0000720,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000733,GO:0000735,GO:0000736,GO:0000781,GO:0000784,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0001302,GO:0001325,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006290,GO:0006293,GO:0006294,GO:0006295,GO:0006296,GO:0006298,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006949,GO:0006950,GO:0006955,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0007548,GO:0007568,GO:0007569,GO:0008022,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009653,GO:0009791,GO:0009892,GO:0009893,GO:0009987,GO:0010165,GO:0010212,GO:0010213,GO:0010224,GO:0010259,GO:0010332,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016591,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0017108,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019724,GO:0019899,GO:0019904,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031334,GO:0031593,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0033683,GO:0034622,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035166,GO:0035264,GO:0035822,GO:0035825,GO:0035861,GO:0036297,GO:0040007,GO:0042113,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043240,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044798,GO:0045002,GO:0045132,GO:0045137,GO:0045165,GO:0045190,GO:0045321,GO:0045934,GO:0045935,GO:0046483,GO:0046546,GO:0046649,GO:0046661,GO:0046982,GO:0046983,GO:0048232,GO:0048256,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048569,GO:0048583,GO:0048585,GO:0048589,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0055029,GO:0060249,GO:0060255,GO:0061458,GO:0061695,GO:0061819,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070522,GO:0070911,GO:0070914,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090575,GO:0090656,GO:0090734,GO:0090737,GO:0097159,GO:0098687,GO:0098813,GO:0104004,GO:0140013,GO:0140030,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903046,GO:1904353,GO:1904354,GO:1904429,GO:1904431,GO:1904505,GO:1904506,GO:1905764,GO:1905765,GO:1990234,GO:1990391,GO:2001020,GO:2001021,GO:2001251,GO:2001252
KEGG ModuleM00073,M00074,M00393,M00413
KEGG Pathwayko00510,ko00513,ko01100,ko01524,ko03018,ko03420,ko03460,ko04141,map00510,map00513,map01100,map01524,map03018,map03420,map03460,map04141
KEGG ReactionR05982,R06722
KEGG koko:K01230,ko:K03514,ko:K10849,ko:K10898,ko:K14850
Preferred nameERCC1
Seed eggNOG ortholog2880.D7G4P9
Seed ortholog evalue1e-79
Seed ortholog score303.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1362.2163.1prot_E-siliculosus-1a_F_contig1362.2163.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1362 5759..9095 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927879.0415707-UTR-E-siliculosus-1a_F_contig1362:4975..57581622927879.0415707-UTR-E-siliculosus-1a_F_contig1362:4975..5758Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1362 4976..5758 -
1696318719.8114827-UTR-E-siliculosus-1a_F_contig1362:4975..57581696318719.8114827-UTR-E-siliculosus-1a_F_contig1362:4975..5758Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1362 4976..5758 -
1622927879.1219246-UTR-E-siliculosus-1a_F_contig1362:9095..91961622927879.1219246-UTR-E-siliculosus-1a_F_contig1362:9095..9196Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1362 9096..9196 -
1696318719.9119804-UTR-E-siliculosus-1a_F_contig1362:9095..91961696318719.9119804-UTR-E-siliculosus-1a_F_contig1362:9095..9196Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1362 9096..9196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927879.053545-CDS-E-siliculosus-1a_F_contig1362:5758..60101622927879.053545-CDS-E-siliculosus-1a_F_contig1362:5758..6010Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 5759..6010 -
1696318719.8252685-CDS-E-siliculosus-1a_F_contig1362:5758..60101696318719.8252685-CDS-E-siliculosus-1a_F_contig1362:5758..6010Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 5759..6010 -
1622927879.065152-CDS-E-siliculosus-1a_F_contig1362:6245..63141622927879.065152-CDS-E-siliculosus-1a_F_contig1362:6245..6314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 6246..6314 -
1696318719.8420033-CDS-E-siliculosus-1a_F_contig1362:6245..63141696318719.8420033-CDS-E-siliculosus-1a_F_contig1362:6245..6314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 6246..6314 -
1622927879.076985-CDS-E-siliculosus-1a_F_contig1362:6476..66111622927879.076985-CDS-E-siliculosus-1a_F_contig1362:6476..6611Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 6477..6611 -
1696318719.851896-CDS-E-siliculosus-1a_F_contig1362:6476..66111696318719.851896-CDS-E-siliculosus-1a_F_contig1362:6476..6611Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 6477..6611 -
1622927879.0923336-CDS-E-siliculosus-1a_F_contig1362:7810..79811622927879.0923336-CDS-E-siliculosus-1a_F_contig1362:7810..7981Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 7811..7981 -
1696318719.8610184-CDS-E-siliculosus-1a_F_contig1362:7810..79811696318719.8610184-CDS-E-siliculosus-1a_F_contig1362:7810..7981Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 7811..7981 -
1622927879.1027665-CDS-E-siliculosus-1a_F_contig1362:8566..88061622927879.1027665-CDS-E-siliculosus-1a_F_contig1362:8566..8806Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 8567..8806 -
1696318719.8854923-CDS-E-siliculosus-1a_F_contig1362:8566..88061696318719.8854923-CDS-E-siliculosus-1a_F_contig1362:8566..8806Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 8567..8806 -
1622927879.1125736-CDS-E-siliculosus-1a_F_contig1362:9089..90951622927879.1125736-CDS-E-siliculosus-1a_F_contig1362:9089..9095Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 9090..9095 -
1696318719.9004016-CDS-E-siliculosus-1a_F_contig1362:9089..90951696318719.9004016-CDS-E-siliculosus-1a_F_contig1362:9089..9095Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 9090..9095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1362.2163.1

>prot_E-siliculosus-1a_F_contig1362.2163.1 ID=prot_E-siliculosus-1a_F_contig1362.2163.1|Name=mRNA_E-siliculosus-1a_F_contig1362.2163.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=291bp
MSDLGGASGKPTGTTSREVRRVTNPYLDSRSNNGSSSTAGGIRQMHNRNP
SVPSEFGSNAEAAERRRGQAPPPAPGPSSKIQVHKRQEKNSMLRHLRNVA
FEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRMKELSGHFTLRVL
LCHVDVDDSETPMLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKS
ADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAG
ELSLCPGLGEKKVARIHEALHEPLVRKHSSSRLKRNRTEG*
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mRNA from alignment at E-siliculosus-1a_F_contig1362:4976..9196-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1362.2163.1 ID=mRNA_E-siliculosus-1a_F_contig1362.2163.1|Name=mRNA_E-siliculosus-1a_F_contig1362.2163.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4221bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1362:4976..9196- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGACCTTTTTGTTGTTGGCAGCGTTATCCAGCCACGTGCCCTACCCCTCC
GAGCCTCCGCCTAGGTGCGGGCTTGACGAAGCAAGGCCGTCTGGACTTGA
AATGTCGGTGAGACCGCGGTGTTCCTTTGCGTGTATGCAGACGTTGAGCG
AGCGAGGAGAGAGAGAGAGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGACGCATAAAAGAGAGAGGTACATCAGAGTGTGCACAAGCCAGGGT
TCCTTTGGTGGCAAACAGCAGTAGGACTGGGTACGCACTGGTAAATCGTT
CCCTAAAAAACAGCCGTGCGCTTCTTGTGTGTTATCGCAGGATCTTGGCG
GGGCGAGTGGCAAACCCACGGGTACAACTTCGCGAGAAGTGCGGAGAGTG
ACGAACCCCTACCTGGACAGCAGGAGCAACAATGGTTCGTCCTCAACTGC
TGGGGGCATTCGCCAGATGCACAATCGCAACCCGTCGGTTCCTTCAGAGT
TCGGGAGCAATGCCGAGGCGGCGGAGCGACGACGCGGGCAAGCACCACCA
CCAGCGCCCGGCCCCTCAAGCAAAATACAGGTGCGACGTGAACTCAGAGA
CACATTTCGACAACTCCAAAGGTCATATTCAGTGGTTCATGTGCCACAAA
CGTTTTAACCGTTACATGCCTTATTCGCCTCGCAAGCATGAATTCCCTGA
ACCACAAGAAAGCTGATCCCTCATGTTTTTTAAAGAAAAAATACAAGTAC
AAACACCGAAAGACTACCCGTTCGAGAAAAAGCCACAGTCGAAGGGGATT
ACAACCTGTGCGAGTGTGTTGTACTTCGAGCAACAGCGGCGTAGCTGCAG
CAGCTATCTACAATTGTAGCCTTGTATTGTAGACTCTTGAATACCGAGGA
GAATGTTCGAGTCTGCTACGGGTTTTGAACTAACCACCTCCCGACAGACA
GGGTAGGAGGGAAACCGCCGGAACAAGGTGGCAGAGGAGATTATTCTCGG
AGAAGGTATAGTATACCATCTGTTGCTGAAGACAACAGCAGCAGGAGCGG
CGTTCATGGCGTAGATGGGTGAGACACCCCCCCTTTCTAGATGTGACATG
TACTTTGTACTGATGGCTGATTCGCGGAGGCTGAGCCTTACACTCGCCCA
CGGATGGATTGGCAGGTCCACAAACGCCAGGAGAAAAACTCCATGCTCAG
GCACCTGCGGAACGTCGCTTTCGAAATCACACCAGGGCTTGTCGCGGATT
TCGTGCTCGGGCCAAAGACGTGCGCTGTATTCATTAGCCTGAGATACCAC
CTTCTCTACCCTCACTACCTCATCCAAAGAATGAAGGTGAGATTGCGCCT
GATGTAAGACGACCGCAGCGGTGAGATGACCTAGTCTACGACAACCCCCG
GAGGTATGCGTAGCTCCGGCTTGGTCTGAACCCCGATCCCTTTTTTCTCA
CCCTCGCCGCTAGAAAAGGAAGGAGGGAGGGAGGGAGAGAACGAAAAGTT
GAGAGATACAAAGACGCTTCCATAACGGCCAGCTGCATTGTTGTAGGTGA
CAAGTATGCACAGGCATCTGTGTGGCTAAGCCTTTGCGTTGCTCTCTAGT
TTCTTCCGCACATTTGGCATGACCGCGATCTAAAGCACGATAGAAAAATG
TCATGCCGCACACTTTGTCCCCCCCCCGCCCGGGATCCCCCCCCCCCCGG
GTTTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAA
ACAAGCCGATCATTTCGTGAGCTCGGCAACCAGGTTGCCGCTTTTTTTTT
TTTGCCTCTGTTTTTTTTTTTCGGCAGTAACCACAATGGTGGTCGAGTAG
ATATGTTGTGCGGGGTCGAGAACCCTCACTCCGCGCAAAGGGGATGATTG
CATCACGTTGTGTTGAATTGGTCAAGCACCCTTGAGGCACTTACACAGTG
CTTACAACTGTCTCTGGAAGTGAAAGCACCAGAAATAAGTTAAGTCATAC
GCAGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAACACCCT
TAGAGGATGCAGCGAACCCTTCGTGCGACTCGCCGAATACCTCACGGTGC
TGCGCGATTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTC
CGTCCCGGCTTTGTAGGGATGCGAGGTCAATGCTCGAACGACTACGGCAT
GCACGACTATGAGTACACCCCCCCCCCATGAGTACGTGGGGTGCCCACTT
GCACCAGCAAAGGTTATTTCCACTCCATTCGAAACTCGACGTAGACAGGA
ATGTCGAGAACGTGGCCGGTCGAAGAGTTTGGCTTGGTTTTAGAGAAAGA
ACCAGAGAACGACTCTACTCTAGAACCAAGTGTCGGGGGGAAATCAAGAA
CATATCTTCAGCGTCGCAACAGAAACTGACACCCTTGAGGGTCTGCAGCA
CTTCCGTGGATAGGAATGTTTTGAAACTGCTCGTGTGCGTAAGTTTCATC
CCATGCACGTGTATCACGCGCACATTTTCATGCAGGAGCTATCGGGGCAT
TTCACCCTTCGTGTCCTGCTTTGCCATGTCGATGTGGACGACAGCGAGAC
CCCTATGCTCGAGATCAACAAAATGGCGGTTTTTAACGACTTCACACTCG
TCCTGGCGTGGAGCCTCCAGGTGAAGAAACACTGGAATATGTGTCATGGT
AGCTCAAGCCTCGAACACACGTGCATAGGCGTCGAGCACCTTGCGAGGTA
CTTCAAGCCGTTGTCTTTTGTGCTCTTAAACTATTACGCTCTTACGCTCT
TACTTTTGCAACACACGACGTTCATCGAACAGGAAGCAGCCAGATATCTG
GAGACCTACAAGGCCTACGAGCACAAGTCGGCAGACAGCATTCAAGAGAA
GGTGGGTCGCAGCGGTCACACACATCGTCCCATGTTTTCACACCTCGTAT
ACTGGCCACCGTGACATGGACCAATGAAAAAGCTGTAAGTGCTTTTTGCT
TGCAGCTCAGAAAAAATGAATTGATACTTCGCCGCCCGAAGAGTAGAACA
AACTCCAAATGTGATTAGCCCTACGACTCATGCCGCTTTTCTCTCGGCCT
GATACTGTATGTTGTTACAACACTCGGTGCAATCAGGTTGACGACGACTT
CCTGGGGAAACTGCAGGATTGCTTTGGAGTGGTCAGGTCCGTCAACAAGT
CCGACGTGCTCACTCTTGCATCCAACTTCGGTTCTCTCAAGGCCGTGTGC
GATGCGACTGCCGGCGAACTGTCCTTGTGCCCAGGCCTCGGGGAGAAGAA
AGTTGCTAGAATACATGAGGCCTTGCACGAGCCATTGGTGCGCAAGCACA
GCAGTTCCAGACTCAAGCGGAATAGGACGGAGGGCTGAAAGAGACAAATT
CAAACGTAAACCTTGAGCCGCTGCGGCTGTGATCGGTGGTGTTGTGAGTT
GGAGGCTGATCGCATTCCGAGGCAGCCACGCTGCCGCTGATGGGGAAGAT
GCTGCTCCAGTGGCAGCTATGGTGTTCGTGGATTCGGCTTCTGCTGGGAA
ATTGGCTGCCATTGTTGTTGGCTTGGGTCCGTTCCCGCACCGAGCGGATG
CTGGTTCCTTGGCTCCCTTCCTCGCGGGGTGTGAGCCATCTGCACGCTCG
GACTTGGGCGTCCTTGGCGGCGTTGCGAAGTGTGCGATGGCGGTGATCGG
CACCACGTTTCTTCTTGAGGGGGTTAGCACCTGTGGGGCCGTGACGGTTG
TGATTGTCGCCGTTCAGTCCTTTCTCACTGCCCAACAACGACCATTGTCA
ACGTCTGGTTAGCCCCTCGTGGTTCTCGGGAAGATTTGTTGGAGAGATAC
CCCCCTCCCACGGTCGGAAGCGGAACCGCCTCGTCCCTGGCGAGCAAGGT
GAAGCCCTCGGGACTTCTGCGATGCTTGGGCCTTTGCCGGGACGACCTAG
TTGGCGCCTCAGTAGGACGACATTGGCGTCTTGCCCCGCATATATGTGGA
TTTGCTGTTGGACAAGATGATGCACATGAAGTGTCAAGAGATGTAGCCGA
TGAGCCCCTTGCTGCCACTCTTCCGGCGCTCAAATTAGAGCAAGGCCCAT
AACTGTTCGAGGCAAGTGAGATCGGCTCCTGTTCCTGTGCCATGGCCGGG
TTCGCCCCCTATCGTAATCAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1362:4976..9196-

>mRNA_E-siliculosus-1a_F_contig1362.2163.1 ID=mRNA_E-siliculosus-1a_F_contig1362.2163.1|Name=mRNA_E-siliculosus-1a_F_contig1362.2163.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1746bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1362:4976..9196- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGATGTCGGATCTTGGCGGGGCGAGTGGCAAACCCACGGGTACAAC
TTCGCGAGAAGTGCGGAGAGTGACGAACCCCTACCTGGACAGCAGGAGCA
ACAATGGTTCGTCCTCAACTGCTGGGGGCATTCGCCAGATGCACAATCGC
AACCCGTCGGTTCCTTCAGAGTTCGGGAGCAATGCCGAGGCGGCGGAGCG
ACGACGCGGGCAAGCACCACCACCAGCGCCCGGCCCCTCAAGCAAAATAC
AGGATCTTGGCGGGGCGAGTGGCAAACCCACGGGTACAACTTCGCGAGAA
GTGCGGAGAGTGACGAACCCCTACCTGGACAGCAGGAGCAACAATGGTTC
GTCCTCAACTGCTGGGGGCATTCGCCAGATGCACAATCGCAACCCGTCGG
TTCCTTCAGAGTTCGGGAGCAATGCCGAGGCGGCGGAGCGACGACGCGGG
CAAGCACCACCACCAGCGCCCGGCCCCTCAAGCAAAATACAGGTCCACAA
ACGCCAGGAGAAAAACTCCATGCTCAGGCACCTGCGGAACGTCGCTTTCG
AAATCACACCAGGGCTTGTCGCGGATTTCGTGCTCGGGCCAAAGACGTGC
GCTGTATTCATTAGCCTGAGATACCACCTTCTCTACCCTCACTACCTCAT
CCAAAGAATGAAGGTCCACAAACGCCAGGAGAAAAACTCCATGCTCAGGC
ACCTGCGGAACGTCGCTTTCGAAATCACACCAGGGCTTGTCGCGGATTTC
GTGCTCGGGCCAAAGACGTGCGCTGTATTCATTAGCCTGAGATACCACCT
TCTCTACCCTCACTACCTCATCCAAAGAATGAAGGAGCTATCGGGGCATT
TCACCCTTCGTGTCCTGCTTTGCCATGTCGATGTGGACGACAGCGAGACC
CCTATGCTCGAGATCAACAAAATGGCGGTTTTTAACGACTTCACACTCGT
CCTGGCGTGGAGCCTCCAGGAGCTATCGGGGCATTTCACCCTTCGTGTCC
TGCTTTGCCATGTCGATGTGGACGACAGCGAGACCCCTATGCTCGAGATC
AACAAAATGGCGGTTTTTAACGACTTCACACTCGTCCTGGCGTGGAGCCT
CCAGGAAGCAGCCAGATATCTGGAGACCTACAAGGCCTACGAGCACAAGT
CGGCAGACAGCATTCAAGAGAAGGAAGCAGCCAGATATCTGGAGACCTAC
AAGGCCTACGAGCACAAGTCGGCAGACAGCATTCAAGAGAAGGTTGACGA
CGACTTCCTGGGGAAACTGCAGGATTGCTTTGGAGTGGTCAGGTCCGTCA
ACAAGTCCGACGTGCTCACTCTTGCATCCAACTTCGGTTCTCTCAAGGCC
GTGTGCGATGCGACTGCCGGCGAACTGTCCTTGTGCCCAGGCCTCGGGGA
GAAGAAAGTTGCTAGAATACATGAGGCCTTGCACGAGCCATTGGTGCGCA
AGCACAGCAGTTCCAGACTCAAGCGGAATAGGACGGAGGGCTGAGTTGAC
GACGACTTCCTGGGGAAACTGCAGGATTGCTTTGGAGTGGTCAGGTCCGT
CAACAAGTCCGACGTGCTCACTCTTGCATCCAACTTCGGTTCTCTCAAGG
CCGTGTGCGATGCGACTGCCGGCGAACTGTCCTTGTGCCCAGGCCTCGGG
GAGAAGAAAGTTGCTAGAATACATGAGGCCTTGCACGAGCCATTGGTGCG
CAAGCACAGCAGTTCCAGACTCAAGCGGAATAGGACGGAGGGCTGA
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