mRNA_E-siliculosus-1a_F_contig13603.2156.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: UPI00110B01FA (hypothetical protein n=1 Tax=Maribacter algarum TaxID=2578118 RepID=UPI00110B01FA) HSP 1 Score: 91.7 bits (226), Expect = 3.470e-23 Identity = 37/61 (60.66%), Postives = 56/61 (91.80%), Query Frame = 1
Query: 1 MIFRVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKVLR 183
MIFR+L++++I+GL +L R+++ SEY+KCQKC+G+GYW+AT+GE+DKCD+C+G+GKVLR
Sbjct: 1 MIFRILMLLLIIGLAIFLIRMVSNTSEYKKCQKCDGKGYWRATKGEKDKCDVCQGAGKVLR 61
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: A0A554VG66_9FLAO (Uncharacterized protein n=1 Tax=Aquimarina algiphila TaxID=2047982 RepID=A0A554VG66_9FLAO) HSP 1 Score: 82.4 bits (202), Expect = 1.630e-19 Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 1
Query: 1 MIFRVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKVLR 183
MIFR+L+I + + YY+ R + GNSEY+ C+KC+G+GYW A RGE+DKCDICKGSG++ R
Sbjct: 1 MIFRLLVIFLAIAGAYYIIRNVFGNSEYKSCKKCDGKGYWIAMRGEKDKCDICKGSGRIPR 61
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: UPI0003795E3B (hypothetical protein n=1 Tax=Lewinella cohaerens TaxID=70995 RepID=UPI0003795E3B) HSP 1 Score: 58.9 bits (141), Expect = 3.040e-10 Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 1 MIFRVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKV 177
M+FR+L +++I + YYL+ ++ G KC C+G GYW+ TRGE++ C C G+GK
Sbjct: 1 MLFRLLWLVLIGAVAYYLFNLLVGLVNANKCSYCDGHGYWEGTRGEKNFCKTCNGTGKA 59
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: UPI000472D41D (hypothetical protein n=1 Tax=Aquimarina pacifica TaxID=1296415 RepID=UPI000472D41D) HSP 1 Score: 58.5 bits (140), Expect = 5.890e-10 Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 1 MIFRVLIIIVILGLVYYLYRIITGNSEYR---------KCQKCNGQGYWKATRGERDKCDICKGSGKV 177
MIFR+L++ ++ ++YL + + ++ + KC+KCNG GYW ATRGE++KC++C GSGK+
Sbjct: 1 MIFRILLLTAVVYGIFYLIKKVKPINKLKEVRLKFDPLKCRKCNGMGYWIATRGEKEKCNLCWGSGKM 68
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: A0A8J5D606_9CHEL (Thioredoxin 1 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A8J5D606_9CHEL) HSP 1 Score: 61.6 bits (148), Expect = 1.380e-9 Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1
Query: 31 ILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICK 162
+LG V Y R GN EYRKC KC G+G+WK RGE++KCD+CK
Sbjct: 76 VLGAVIYFIRAY-GNKEYRKCGKCEGKGFWKGLRGEKEKCDVCK 118
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: A0A6N4EBF6_9RHOO (Uncharacterized protein n=1 Tax=Azospira oryzae TaxID=146939 RepID=A0A6N4EBF6_9RHOO) HSP 1 Score: 56.6 bits (135), Expect = 3.160e-9 Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 7 FRVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKVLR 183
FR+LI+ + LVY+L + T SE+ KC +C G+G+W A RG+ + CD C+GSGK+ R
Sbjct: 6 FRLLILGGFIALVYFLIKSFTTPSEFVKCGRCEGKGFWYAARGK-ETCDWCRGSGKLPR 63
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: A0A1H9KRJ9_9BACT (Uncharacterized protein n=1 Tax=Lewinella agarilytica TaxID=478744 RepID=A0A1H9KRJ9_9BACT) HSP 1 Score: 54.3 bits (129), Expect = 2.350e-8 Identity = 20/56 (35.71%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 10 RVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKV 177
R++I+ + LG + +L +++ + +KC C G+GYW TRG+R+ C +C G+G++
Sbjct: 9 RIIIVFLFLGGLLFLGKLVVNSLNTKKCNNCKGKGYWIGTRGDRNNCKVCDGTGQL 64
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: A0A5C7MY88_9BACT (Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A5C7MY88_9BACT) HSP 1 Score: 51.2 bits (121), Expect = 3.370e-7 Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 28 VILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKV 177
+ILG+V+ + ++I + KC +C G+GYW R ER++CD CKGSG++
Sbjct: 9 IILGVVWLIVKLIMQSDGTIKCSRCEGKGYWYGAR-ERERCDWCKGSGRL 57
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: UPI00069774F1 (hypothetical protein n=1 Tax=Aureispira sp. CCB-QB1 TaxID=1313421 RepID=UPI00069774F1) HSP 1 Score: 46.6 bits (109), Expect = 2.310e-5 Identity = 21/58 (36.21%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 10 RVLIIIVILGLVYYLYRIITGNSEYRK--CQKCNGQGYWKATRGERDKCDICKGSGKV 177
+VL+ + I+G + + II NS+ + C++C G+G+W+ RGER+ C C G+G +
Sbjct: 2 KVLLFVAIVGAIIF---IIINNSQSNQYICERCEGKGFWRGLRGERNNCKACDGTGYI 56 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13603.2156.1 >prot_E-siliculosus-1a_F_contig13603.2156.1 ID=prot_E-siliculosus-1a_F_contig13603.2156.1|Name=mRNA_E-siliculosus-1a_F_contig13603.2156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=62bp MIFRVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCback to top mRNA from alignment at E-siliculosus-1a_F_contig13603:83..268+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13603.2156.1 ID=mRNA_E-siliculosus-1a_F_contig13603.2156.1|Name=mRNA_E-siliculosus-1a_F_contig13603.2156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=186bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13603:83..268+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13603:83..268+ >mRNA_E-siliculosus-1a_F_contig13603.2156.1 ID=mRNA_E-siliculosus-1a_F_contig13603.2156.1|Name=mRNA_E-siliculosus-1a_F_contig13603.2156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13603:83..268+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |