mRNA_E-siliculosus-1a_F_contig13603.2156.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13603.2156.1
Unique NamemRNA_E-siliculosus-1a_F_contig13603.2156.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: UPI00110B01FA (hypothetical protein n=1 Tax=Maribacter algarum TaxID=2578118 RepID=UPI00110B01FA)

HSP 1 Score: 91.7 bits (226), Expect = 3.470e-23
Identity = 37/61 (60.66%), Postives = 56/61 (91.80%), Query Frame = 1
Query:    1 MIFRVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKVLR 183
            MIFR+L++++I+GL  +L R+++  SEY+KCQKC+G+GYW+AT+GE+DKCD+C+G+GKVLR
Sbjct:    1 MIFRILMLLLIIGLAIFLIRMVSNTSEYKKCQKCDGKGYWRATKGEKDKCDVCQGAGKVLR 61          
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: A0A554VG66_9FLAO (Uncharacterized protein n=1 Tax=Aquimarina algiphila TaxID=2047982 RepID=A0A554VG66_9FLAO)

HSP 1 Score: 82.4 bits (202), Expect = 1.630e-19
Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 1
Query:    1 MIFRVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKVLR 183
            MIFR+L+I + +   YY+ R + GNSEY+ C+KC+G+GYW A RGE+DKCDICKGSG++ R
Sbjct:    1 MIFRLLVIFLAIAGAYYIIRNVFGNSEYKSCKKCDGKGYWIAMRGEKDKCDICKGSGRIPR 61          
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: UPI0003795E3B (hypothetical protein n=1 Tax=Lewinella cohaerens TaxID=70995 RepID=UPI0003795E3B)

HSP 1 Score: 58.9 bits (141), Expect = 3.040e-10
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 MIFRVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKV 177
            M+FR+L +++I  + YYL+ ++ G     KC  C+G GYW+ TRGE++ C  C G+GK 
Sbjct:    1 MLFRLLWLVLIGAVAYYLFNLLVGLVNANKCSYCDGHGYWEGTRGEKNFCKTCNGTGKA 59          
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: UPI000472D41D (hypothetical protein n=1 Tax=Aquimarina pacifica TaxID=1296415 RepID=UPI000472D41D)

HSP 1 Score: 58.5 bits (140), Expect = 5.890e-10
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 MIFRVLIIIVILGLVYYLYRIITGNSEYR---------KCQKCNGQGYWKATRGERDKCDICKGSGKV 177
            MIFR+L++  ++  ++YL + +   ++ +         KC+KCNG GYW ATRGE++KC++C GSGK+
Sbjct:    1 MIFRILLLTAVVYGIFYLIKKVKPINKLKEVRLKFDPLKCRKCNGMGYWIATRGEKEKCNLCWGSGKM 68          
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: A0A8J5D606_9CHEL (Thioredoxin 1 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A8J5D606_9CHEL)

HSP 1 Score: 61.6 bits (148), Expect = 1.380e-9
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   31 ILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICK 162
            +LG V Y  R   GN EYRKC KC G+G+WK  RGE++KCD+CK
Sbjct:   76 VLGAVIYFIRAY-GNKEYRKCGKCEGKGFWKGLRGEKEKCDVCK 118          
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: A0A6N4EBF6_9RHOO (Uncharacterized protein n=1 Tax=Azospira oryzae TaxID=146939 RepID=A0A6N4EBF6_9RHOO)

HSP 1 Score: 56.6 bits (135), Expect = 3.160e-9
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    7 FRVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKVLR 183
            FR+LI+   + LVY+L +  T  SE+ KC +C G+G+W A RG+ + CD C+GSGK+ R
Sbjct:    6 FRLLILGGFIALVYFLIKSFTTPSEFVKCGRCEGKGFWYAARGK-ETCDWCRGSGKLPR 63          
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: A0A1H9KRJ9_9BACT (Uncharacterized protein n=1 Tax=Lewinella agarilytica TaxID=478744 RepID=A0A1H9KRJ9_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.350e-8
Identity = 20/56 (35.71%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   10 RVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKV 177
            R++I+ + LG + +L +++  +   +KC  C G+GYW  TRG+R+ C +C G+G++
Sbjct:    9 RIIIVFLFLGGLLFLGKLVVNSLNTKKCNNCKGKGYWIGTRGDRNNCKVCDGTGQL 64          
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: A0A5C7MY88_9BACT (Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A5C7MY88_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 3.370e-7
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   28 VILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKCDICKGSGKV 177
            +ILG+V+ + ++I  +    KC +C G+GYW   R ER++CD CKGSG++
Sbjct:    9 IILGVVWLIVKLIMQSDGTIKCSRCEGKGYWYGAR-ERERCDWCKGSGRL 57          
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Match: UPI00069774F1 (hypothetical protein n=1 Tax=Aureispira sp. CCB-QB1 TaxID=1313421 RepID=UPI00069774F1)

HSP 1 Score: 46.6 bits (109), Expect = 2.310e-5
Identity = 21/58 (36.21%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   10 RVLIIIVILGLVYYLYRIITGNSEYRK--CQKCNGQGYWKATRGERDKCDICKGSGKV 177
            +VL+ + I+G + +   II  NS+  +  C++C G+G+W+  RGER+ C  C G+G +
Sbjct:    2 KVLLFVAIVGAIIF---IIINNSQSNQYICERCEGKGFWRGLRGERNNCKACDGTGYI 56          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13603.2156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI00110B01FA3.470e-2360.66hypothetical protein n=1 Tax=Maribacter algarum Ta... [more]
A0A554VG66_9FLAO1.630e-1959.02Uncharacterized protein n=1 Tax=Aquimarina algiphi... [more]
UPI0003795E3B3.040e-1042.37hypothetical protein n=1 Tax=Lewinella cohaerens T... [more]
UPI000472D41D5.890e-1041.18hypothetical protein n=1 Tax=Aquimarina pacifica T... [more]
A0A8J5D606_9CHEL1.380e-959.09Thioredoxin 1 n=2 Tax=cellular organisms TaxID=131... [more]
A0A6N4EBF6_9RHOO3.160e-947.46Uncharacterized protein n=1 Tax=Azospira oryzae Ta... [more]
A0A1H9KRJ9_9BACT2.350e-835.71Uncharacterized protein n=1 Tax=Lewinella agarilyt... [more]
A0A5C7MY88_9BACT3.370e-744.00Uncharacterized protein n=1 Tax=Cyclobacteriaceae ... [more]
UPI00069774F12.310e-536.21hypothetical protein n=1 Tax=Aureispira sp. CCB-QB... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13603contigE-siliculosus-1a_F_contig13603:83..268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size186
Model size186
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927877.4683921-CDS-E-siliculosus-1a_F_contig13603:82..2681622927877.4683921-CDS-E-siliculosus-1a_F_contig13603:82..268Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13603 83..268 +
1696318719.3884337-CDS-E-siliculosus-1a_F_contig13603:82..2681696318719.3884337-CDS-E-siliculosus-1a_F_contig13603:82..268Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13603 83..268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13603.2156.1prot_E-siliculosus-1a_F_contig13603.2156.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13603 83..268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13603.2156.1

>prot_E-siliculosus-1a_F_contig13603.2156.1 ID=prot_E-siliculosus-1a_F_contig13603.2156.1|Name=mRNA_E-siliculosus-1a_F_contig13603.2156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=62bp
MIFRVLIIIVILGLVYYLYRIITGNSEYRKCQKCNGQGYWKATRGERDKC
DICKGSGKVLR*
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mRNA from alignment at E-siliculosus-1a_F_contig13603:83..268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13603.2156.1 ID=mRNA_E-siliculosus-1a_F_contig13603.2156.1|Name=mRNA_E-siliculosus-1a_F_contig13603.2156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=186bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13603:83..268+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATTTTTAGAGTCTTAATCATCATAGTTATTCTGGGCTTGGTTTATTA CTTATATCGAATAATAACAGGGAATTCTGAATATAGAAAATGTCAGAAAT GCAACGGACAAGGCTATTGGAAAGCCACTCGGGGAGAAAGGGATAAATGT GATATTTGTAAGGGATCTGGTAAGGTATTAAGATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13603:83..268+

>mRNA_E-siliculosus-1a_F_contig13603.2156.1 ID=mRNA_E-siliculosus-1a_F_contig13603.2156.1|Name=mRNA_E-siliculosus-1a_F_contig13603.2156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13603:83..268+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATTTTTAGAGTCTTAATCATCATAGTTATTCTGGGCTTGGTTTATTA
CTTATATCGAATAATAACAGGGAATTCTGAATATAGAAAATGTCAGAAAT
GCAACGGACAAGGCTATTGGAAAGCCACTCGGGGAGAAAGGGATAAATGT
GATATTTGTAAGGGATCTGGTAAGGTATTAAGATGAATGATTTTTAGAGT
CTTAATCATCATAGTTATTCTGGGCTTGGTTTATTACTTATATCGAATAA
TAACAGGGAATTCTGAATATAGAAAATGTCAGAAATGCAACGGACAAGGC
TATTGGAAAGCCACTCGGGGAGAAAGGGATAAATGTGATATTTGTAAGGG
ATCTGGTAAGGTATTAAGATGA
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