mRNA_E-siliculosus-1a_F_contig13594.2142.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13594.2142.1
Unique NamemRNA_E-siliculosus-1a_F_contig13594.2142.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13594.2142.1 vs. uniprot
Match: A0A6H5KV31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV31_9PHAE)

HSP 1 Score: 499 bits (1286), Expect = 4.230e-177
Identity = 247/253 (97.63%), Postives = 248/253 (98.02%), Query Frame = 1 
Query:    1 AKIPLVLEGDAPAKSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLNGGTFTIDNTEENKSTDRTCYATLENDTVTAMIREGTRMGELCFPRRGNHQRCGRLTGNSADGVAWSGSECMLFAKDGGMTNPHVDVQSVPGGTGRIIHMPAAGVIRRVNHDDAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLPEFARVLRNEGIRFVVINFPVRCSYALPAR 759
            AKIPLVLEGDAP KSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLNGGTFTIDNTEENKS DRTCYAT+ENDTVTAMIREGTRMGELCFPRRGNHQRCGRLTGNSADGVAWSGSECMLFAKDGGMTNPHVDVQSVPGGTG IIHMPAAGVIRRVNH DAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTL EFARVLRNEGIRFVVINFPVRCSYALPAR
Sbjct:   72 AKIPLVLEGDAPPKSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLNGGTFTIDNTEENKSRDRTCYATMENDTVTAMIREGTRMGELCFPRRGNHQRCGRLTGNSADGVAWSGSECMLFAKDGGMTNPHVDVQSVPGGTGTIIHMPAAGVIRRVNHADAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLTEFARVLRNEGIRFVVINFPVRCSYALPAR 324
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BLAST of mRNA_E-siliculosus-1a_F_contig13594.2142.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 449 bits (1154), Expect = 1.320e-151
Identity = 222/253 (87.75%), Postives = 235/253 (92.89%), Query Frame = 1 
Query:    1 AKIPLVLEGDAPAKSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLNGGTFTIDNTEENKSTDRTCYATLENDTVTAMIREGTRMGELCFPRRGNHQRCGRLTGNSADGVAWSGSECMLFAKDGGMTNPHVDVQSVPGGTGRIIHMPAAGVIRRVNHDDAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLPEFARVLRNEGIRFVVINFPVRCSYALPAR 759
            A IPLVLEGDAPA+SPMGEMMQYAA + VAR+GYIGKTSGRGPL L P LTDAWRTGAVTD+QLRDTLNGGTFTIDNTEENK TD+TCYATLENDTVTAMIREGTRMGELCFPRRGNH + G LTG  ADGVAWSGSECMLFAKDGGMTNPHVDVQSVPGGTGRIIHMPAAGVIRRVN+ +   PAKQAIVVHADDMSRVIETL+INT KESASQYGGPPRTLPEFARVL+++GIRFVV+NFP RCSYALPAR
Sbjct:  314 AAIPLVLEGDAPAQSPMGEMMQYAAGKGVARIGYIGKTSGRGPLKLAPGLTDAWRTGAVTDKQLRDTLNGGTFTIDNTEENKRTDKTCYATLENDTVTAMIREGTRMGELCFPRRGNHLQYGTLTGKEADGVAWSGSECMLFAKDGGMTNPHVDVQSVPGGTGRIIHMPAAGVIRRVNYVEENRPAKQAIVVHADDMSRVIETLKINTKKESASQYGGPPRTLPEFARVLKSKGIRFVVMNFPSRCSYALPAR 566
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BLAST of mRNA_E-siliculosus-1a_F_contig13594.2142.1 vs. uniprot
Match: D7G2S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S5_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 9.550e-40
Identity = 100/256 (39.06%), Postives = 143/256 (55.86%), Query Frame = 1 
Query:    1 AKIPLVLEGDAPAKSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLNGG-TFTIDNTEENKSTDRTCYATLENDTVTAMIREGTRMGELCFPRRGNHQRCGRLTGN-SADGVAWSGSECMLFA-KDGGMTNPHVDVQSVPGGTGRIIHMPAAGVIRRVNHDDAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLPEFARVLRNEGIRFVVINFPVRCSYALPAR 759
            A  P++ EGD   +S MG   + A  + + R+G +G  +G     ++P   ++W  G +   +L+       T+T  N EE+   D   + T+E    + ++R  TRMG LC P R    R G LTG  S  G +WSGSE   FA + GG+T+ HVD Q V G     +++PAAG +R VN   + GPAK+AI++ A DM RV++ L ++  K S+SQY G    L   A  LR   IRFVV++FP  CSYA+PAR
Sbjct:  347 AHFPVIFEGDDTYRSVMGTACKSALARNLTRIGGLGGRNGTSMFGVSPSFVESWNEGVIDGDELKKAFGTNPTWTTQNFEEDDKVDVLSFNTIECVGASDLVRN-TRMGGLCHPDR-PPTRGGVLTGTTSVRGKSWSGSEVTAFAMRTGGVTHSHVDPQMVHG---EHLYLPAAGTMRSVNRRGS-GPAKRAILMCAHDMDRVVDLLGLDVNKPSSSQYTGAIVDLEGLATRLRVNSIRFVVVDFPEYCSYAIPAR 596
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BLAST of mRNA_E-siliculosus-1a_F_contig13594.2142.1 vs. uniprot
Match: UPI0000161E52 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E52)

HSP 1 Score: 140 bits (352), Expect = 1.380e-34
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 1 
Query:    1 AKIPLVLEGDAPAKSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLNGGTFTIDNTE 237
            A+IPLVLEGDAP KSPMGEMM+YAA + VAR+GYIGKTSGRGPL LTPDLTDAWR GAV+D+QLRDTLNGGTFTIDNTE
Sbjct:  466 AQIPLVLEGDAPEKSPMGEMMKYAAGKGVARIGYIGKTSGRGPLTLTPDLTDAWRIGAVSDKQLRDTLNGGTFTIDNTE 544
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13594.2142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KV31_9PHAE4.230e-17797.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP46_ECTSI1.320e-15187.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S5_ECTSI9.550e-4039.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0000161E521.380e-3486.08hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13594contigE-siliculosus-1a_F_contig13594:382..1273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size759
Model size759
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927874.4778085-CDS-E-siliculosus-1a_F_contig13594:381..6181622927874.4778085-CDS-E-siliculosus-1a_F_contig13594:381..618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13594 382..618 +
1696318717.9393787-CDS-E-siliculosus-1a_F_contig13594:381..6181696318717.9393787-CDS-E-siliculosus-1a_F_contig13594:381..618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13594 382..618 +
1622927874.494008-CDS-E-siliculosus-1a_F_contig13594:751..12731622927874.494008-CDS-E-siliculosus-1a_F_contig13594:751..1273Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13594 752..1273 +
1696318717.9479241-CDS-E-siliculosus-1a_F_contig13594:751..12731696318717.9479241-CDS-E-siliculosus-1a_F_contig13594:751..1273Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13594 752..1273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13594.2142.1prot_E-siliculosus-1a_F_contig13594.2142.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13594 382..1273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13594.2142.1

>prot_E-siliculosus-1a_F_contig13594.2142.1 ID=prot_E-siliculosus-1a_F_contig13594.2142.1|Name=mRNA_E-siliculosus-1a_F_contig13594.2142.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=253bp
AKIPLVLEGDAPAKSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDL
TDAWRTGAVTDQQLRDTLNGGTFTIDNTEENKSTDRTCYATLENDTVTAM
IREGTRMGELCFPRRGNHQRCGRLTGNSADGVAWSGSECMLFAKDGGMTN
PHVDVQSVPGGTGRIIHMPAAGVIRRVNHDDAQGPAKQAIVVHADDMSRV
IETLQINTGKESASQYGGPPRTLPEFARVLRNEGIRFVVINFPVRCSYAL
PAR
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mRNA from alignment at E-siliculosus-1a_F_contig13594:382..1273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13594.2142.1 ID=mRNA_E-siliculosus-1a_F_contig13594.2142.1|Name=mRNA_E-siliculosus-1a_F_contig13594.2142.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=892bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13594:382..1273+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGAAGATCCCCCTCGTTTTGGAGGGCGACGCACCTGCAAAATCGCCAAT
GGGCGAGATGATGCAATACGCCGCCGATCAACGCGTGGCCCGCCTTGGCT
ACATCGGCAAGACGTCTGGCCGGGGGCCTCTCGCACTGACGCCGGACTTG
ACGGATGCCTGGCGCACTGGTGCTGTGACGGACCAGCAACTGCGAGACAC
GCTCAACGGAGGAACGTTCACCATCGATAACACAGAGGTGCGTTAGGTTG
CGTTTCGCGTTTCACCTACACAATTCTCACGCTTGTGTTGTTGATGATAA
GTAGAAAGTACAATATCCGTACTGGTCAAACTGACGCCGACGCCTTCCGT
GGACGCCTGTTGTGCGGCAGGAGAATAAGAGCACGGACAGGACGTGCTAC
GCCACGCTGGAAAACGACACCGTGACTGCGATGATTCGAGAAGGGACGCG
GATGGGAGAGCTTTGTTTTCCACGGAGGGGCAACCACCAACGATGTGGGA
GATTGACTGGAAATTCGGCTGACGGCGTTGCGTGGTCGGGTAGCGAATGC
ATGCTATTTGCCAAAGACGGTGGAATGACAAACCCACACGTGGACGTGCA
ATCTGTCCCGGGAGGAACGGGGAGAATAATCCACATGCCCGCAGCGGGAG
TCATTCGCAGAGTCAACCATGATGACGCACAGGGGCCGGCTAAGCAGGCC
ATCGTAGTGCATGCGGACGATATGTCGAGGGTGATCGAAACTCTGCAAAT
AAATACCGGCAAGGAGTCCGCCAGTCAGTACGGCGGTCCGCCGCGAACGC
TTCCGGAGTTCGCGAGAGTGTTGAGAAACGAGGGAATTCGGTTTGTTGTG
ATCAACTTTCCTGTGCGCTGCTCGTACGCCCTTCCCGCGAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13594:382..1273+

>mRNA_E-siliculosus-1a_F_contig13594.2142.1 ID=mRNA_E-siliculosus-1a_F_contig13594.2142.1|Name=mRNA_E-siliculosus-1a_F_contig13594.2142.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13594:382..1273+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGAAGATCCCCCTCGTTTTGGAGGGCGACGCACCTGCAAAATCGCCAAT
GGGCGAGATGATGCAATACGCCGCCGATCAACGCGTGGCCCGCCTTGGCT
ACATCGGCAAGACGTCTGGCCGGGGGCCTCTCGCACTGACGCCGGACTTG
ACGGATGCCTGGCGCACTGGTGCTGTGACGGACCAGCAACTGCGAGACAC
GCTCAACGGAGGAACGTTCACCATCGATAACACAGAGGCGAAGATCCCCC
TCGTTTTGGAGGGCGACGCACCTGCAAAATCGCCAATGGGCGAGATGATG
CAATACGCCGCCGATCAACGCGTGGCCCGCCTTGGCTACATCGGCAAGAC
GTCTGGCCGGGGGCCTCTCGCACTGACGCCGGACTTGACGGATGCCTGGC
GCACTGGTGCTGTGACGGACCAGCAACTGCGAGACACGCTCAACGGAGGA
ACGTTCACCATCGATAACACAGAGGAGAATAAGAGCACGGACAGGACGTG
CTACGCCACGCTGGAAAACGACACCGTGACTGCGATGATTCGAGAAGGGA
CGCGGATGGGAGAGCTTTGTTTTCCACGGAGGGGCAACCACCAACGATGT
GGGAGATTGACTGGAAATTCGGCTGACGGCGTTGCGTGGTCGGGTAGCGA
ATGCATGCTATTTGCCAAAGACGGTGGAATGACAAACCCACACGTGGACG
TGCAATCTGTCCCGGGAGGAACGGGGAGAATAATCCACATGCCCGCAGCG
GGAGTCATTCGCAGAGTCAACCATGATGACGCACAGGGGCCGGCTAAGCA
GGCCATCGTAGTGCATGCGGACGATATGTCGAGGGTGATCGAAACTCTGC
AAATAAATACCGGCAAGGAGTCCGCCAGTCAGTACGGCGGTCCGCCGCGA
ACGCTTCCGGAGTTCGCGAGAGTGTTGAGAAACGAGGGAATTCGGTTTGT
TGTGATCAACTTTCCTGTGCGCTGCTCGTACGCCCTTCCCGCGAGGGAGA
ATAAGAGCACGGACAGGACGTGCTACGCCACGCTGGAAAACGACACCGTG
ACTGCGATGATTCGAGAAGGGACGCGGATGGGAGAGCTTTGTTTTCCACG
GAGGGGCAACCACCAACGATGTGGGAGATTGACTGGAAATTCGGCTGACG
GCGTTGCGTGGTCGGGTAGCGAATGCATGCTATTTGCCAAAGACGGTGGA
ATGACAAACCCACACGTGGACGTGCAATCTGTCCCGGGAGGAACGGGGAG
AATAATCCACATGCCCGCAGCGGGAGTCATTCGCAGAGTCAACCATGATG
ACGCACAGGGGCCGGCTAAGCAGGCCATCGTAGTGCATGCGGACGATATG
TCGAGGGTGATCGAAACTCTGCAAATAAATACCGGCAAGGAGTCCGCCAG
TCAGTACGGCGGTCCGCCGCGAACGCTTCCGGAGTTCGCGAGAGTGTTGA
GAAACGAGGGAATTCGGTTTGTTGTGATCAACTTTCCTGTGCGCTGCTCG
TACGCCCTTCCCGCGAGG
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