mRNA_E-siliculosus-1a_F_contig13558.2122.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13558.2122.1
Unique NamemRNA_E-siliculosus-1a_F_contig13558.2122.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13558.2122.1 vs. uniprot
Match: A0A6H5JPH9_9PHAE (IU_nuc_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.380e-22
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 LETKTRPFFAWDLLTVAQLVHPELFTTSQVECDVVVGGASQGRTVR 138
            LETKTRPFFAWDLLTVAQLVHPELFTTSQVECDVV+GGASQGRTVR
Sbjct:  272 LETKTRPFFAWDLLTVAQLVHPELFTTSQVECDVVIGGASQGRTVR 317
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BLAST of mRNA_E-siliculosus-1a_F_contig13558.2122.1 vs. uniprot
Match: D8LM07_ECTSI (Inosine-adenosine-guanosine-nucleoside hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM07_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.940e-22
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 LETKTRPFFAWDLLTVAQLVHPELFTTSQVECDVVVGGASQGRTVR 138
            LET+TRPFFAWDLLTVAQLVHPELFTTSQVECDVVVGGASQGRTVR
Sbjct:  260 LETETRPFFAWDLLTVAQLVHPELFTTSQVECDVVVGGASQGRTVR 305
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BLAST of mRNA_E-siliculosus-1a_F_contig13558.2122.1 vs. uniprot
Match: UPI001B374E6B (Nucleoside hydrolase n=2 Tax=Micromonospora sp. C51 TaxID=2824879 RepID=UPI001B374E6B)

HSP 1 Score: 57.0 bits (136), Expect = 2.820e-8
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 LETKTRPFFAWDLLTVAQLVHPELFTTSQVECDVVVGGASQGRTVR 138
            +ET   P+  WD L  + L  PELFT  Q+ CDVVV GAS+GRTVR
Sbjct:  242 VETVGSPYCCWDSLATSYLAAPELFTFDQIRCDVVVDGASEGRTVR 287
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13558.2122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPH9_9PHAE2.380e-2297.83IU_nuc_hydro domain-containing protein n=1 Tax=Ect... [more]
D8LM07_ECTSI5.940e-2297.83Inosine-adenosine-guanosine-nucleoside hydrolase n... [more]
UPI001B374E6B2.820e-856.52Nucleoside hydrolase n=2 Tax=Micromonospora sp. C5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13558contigE-siliculosus-1a_F_contig13558:125..262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size138
Model size138
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.F
EC3.2.2.1
EggNOG OGsCOG1957@1,KOG2938@2759
EggNOG free text desc.purine nucleosidase activity
KEGG Pathwayko00230,ko00760,ko01100,map00230,map00760,map01100
KEGG ReactionR01245,R01273,R01677,R01770,R02143
KEGG koko:K01239
KEGG rclassRC00033,RC00063,RC00122,RC00318,RC00485
Seed eggNOG ortholog2880.D8LM07
Seed ortholog evalue5.2e-18
Seed ortholog score95.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927870.0814056-CDS-E-siliculosus-1a_F_contig13558:124..2621622927870.0814056-CDS-E-siliculosus-1a_F_contig13558:124..262Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13558 125..262 -
1696318716.7705781-CDS-E-siliculosus-1a_F_contig13558:124..2621696318716.7705781-CDS-E-siliculosus-1a_F_contig13558:124..262Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13558 125..262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13558.2122.1prot_E-siliculosus-1a_F_contig13558.2122.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13558 125..262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13558.2122.1

>prot_E-siliculosus-1a_F_contig13558.2122.1 ID=prot_E-siliculosus-1a_F_contig13558.2122.1|Name=mRNA_E-siliculosus-1a_F_contig13558.2122.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=46bp
LETKTRPFFAWDLLTVAQLVHPELFTTSQVECDVVVGGASQGRTVR
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mRNA from alignment at E-siliculosus-1a_F_contig13558:125..262-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13558.2122.1 ID=mRNA_E-siliculosus-1a_F_contig13558.2122.1|Name=mRNA_E-siliculosus-1a_F_contig13558.2122.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=138bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13558:125..262- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGGAGACCAAGACGCGACCGTTCTTCGCGTGGGATCTGCTCACCGTGGC
CCAGCTGGTGCACCCCGAGCTGTTCACGACGTCGCAGGTGGAGTGCGACG
TCGTCGTCGGGGGAGCCAGCCAGGGGCGCACCGTACGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13558:125..262-

>mRNA_E-siliculosus-1a_F_contig13558.2122.1 ID=mRNA_E-siliculosus-1a_F_contig13558.2122.1|Name=mRNA_E-siliculosus-1a_F_contig13558.2122.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=276bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13558:125..262- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGGAGACCAAGACGCGACCGTTCTTCGCGTGGGATCTGCTCACCGTGGC
CCAGCTGGTGCACCCCGAGCTGTTCACGACGTCGCAGGTGGAGTGCGACG
TCGTCGTCGGGGGAGCCAGCCAGGGGCGCACCGTACGACTGGAGACCAAG
ACGCGACCGTTCTTCGCGTGGGATCTGCTCACCGTGGCCCAGCTGGTGCA
CCCCGAGCTGTTCACGACGTCGCAGGTGGAGTGCGACGTCGTCGTCGGGG
GAGCCAGCCAGGGGCGCACCGTACGA
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