mRNA_E-siliculosus-1a_F_contig13553.2121.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13553.2121.1 vs. uniprot
Match: A0A849F3P3_9FLAO (Response regulator n=1 Tax=Maribacter sp. TaxID=1897614 RepID=A0A849F3P3_9FLAO) HSP 1 Score: 360 bits (923), Expect = 2.730e-124 Identity = 180/199 (90.45%), Postives = 186/199 (93.47%), Query Frame = 1
Query: 1 LTDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALANFTYGANGAAKGEQMPSQDDVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKTKFYRAHKSYSVNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS 597
L DIILASDKTGIDLGKHIRE YDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIAL+NFTYG +G A E +DVP+SNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPK KFYRAHKSY VNVDHIDAINS+D+MINNNLIPISKDFKEFIISAMNS
Sbjct: 54 LIDIILASDKTGIDLGKHIREKYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALSNFTYGTSGKASPEGSTGDEDVPLSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKKKFYRAHKSYIVNVDHIDAINSRDVMINNNLIPISKDFKEFIISAMNS 252
BLAST of mRNA_E-siliculosus-1a_F_contig13553.2121.1 vs. uniprot
Match: A4AUR3_MARSH (Response regulator receiver signal transduction histidine kinase n=64 Tax=root TaxID=1 RepID=A4AUR3_MARSH) HSP 1 Score: 358 bits (919), Expect = 1.110e-123 Identity = 180/199 (90.45%), Postives = 186/199 (93.47%), Query Frame = 1
Query: 1 LTDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALANFTYGANGAAKGEQMPSQDDVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKTKFYRAHKSYSVNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS 597
L DIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIAL+NFTYG N ++ ++DVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYL+KLP KFYRAHKSY VNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS
Sbjct: 54 LIDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALSNFTYGTNKSSSEADGVREEDVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLQKLPNNKFYRAHKSYIVNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS 252
BLAST of mRNA_E-siliculosus-1a_F_contig13553.2121.1 vs. uniprot
Match: G0L7N1_ZOBGA (Two-component system-Response regulator n=13 Tax=Flavobacteriaceae TaxID=49546 RepID=G0L7N1_ZOBGA) HSP 1 Score: 340 bits (871), Expect = 2.110e-116 Identity = 175/199 (87.94%), Postives = 181/199 (90.95%), Query Frame = 1
Query: 1 LTDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALANFTYGANGAAKGEQMPSQDDVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKTKFYRAHKSYSVNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS 597
L DIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIAL+NFT A + S +DVPMSN+VLKDSIFVKKQHLYYRIQF DI+FIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPK KFYRAHKSY VNVDHIDAINSKDIMI + LIPISKDFKEFIISAMNS
Sbjct: 54 LIDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALSNFTRSDKSPAA--VVNSNEDVPMSNTVLKDSIFVKKQHLYYRIQFSDIRFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKNKFYRAHKSYIVNVDHIDAINSKDIMIKDTLIPISKDFKEFIISAMNS 250
BLAST of mRNA_E-siliculosus-1a_F_contig13553.2121.1 vs. uniprot
Match: UPI000B4A9117 (response regulator n=1 Tax=Robiginitalea sediminis TaxID=1982593 RepID=UPI000B4A9117) HSP 1 Score: 340 bits (871), Expect = 2.260e-116 Identity = 173/199 (86.93%), Postives = 180/199 (90.45%), Query Frame = 1
Query: 1 LTDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALANFTYGANGAAKGEQMPSQDDVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKTKFYRAHKSYSVNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS 597
L DIILASDKTGIDLGKHIR+NYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIAL+NF G ++ GEQ D +NSVLKDSIFVKKQHLYYRIQF DIQFIKADNVYLEVNT DKKFLVRSPLKDYLEKLP+ KFYRAHKSY VNVDHIDAINSKDIMINNNLIPISKDFKEFIIS+MNS
Sbjct: 54 LIDIILASDKTGIDLGKHIRDNYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALSNFIKGQKASSAGEQDDDAADGINTNSVLKDSIFVKKQHLYYRIQFDDIQFIKADNVYLEVNTKDKKFLVRSPLKDYLEKLPRNKFYRAHKSYIVNVDHIDAINSKDIMINNNLIPISKDFKEFIISSMNS 252
BLAST of mRNA_E-siliculosus-1a_F_contig13553.2121.1 vs. uniprot
Match: A0A0P7B3R7_9FLAO (LytTR family two component transcriptional regulator n=9 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A0P7B3R7_9FLAO) HSP 1 Score: 339 bits (870), Expect = 3.210e-116 Identity = 172/199 (86.43%), Postives = 180/199 (90.45%), Query Frame = 1
Query: 1 LTDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALANFTYGANGAAKGEQMPSQDDVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKTKFYRAHKSYSVNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS 597
L DIILASDKTGIDLGKHIRE+Y+IPFIFVTSNSD+ATVENAKTVKP+GYLVKPFEQQDLYTSIEIAL+NF Y +K + D MSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPK KFYRAHKSY VNVDHIDAINSKDIMINN LIPISKDFKEFIIS+MNS
Sbjct: 54 LIDIILASDKTGIDLGKHIREHYNIPFIFVTSNSDKATVENAKTVKPDGYLVKPFEQQDLYTSIEIALSNFNYSKKSESKDMGASADGDAFMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKNKFYRAHKSYIVNVDHIDAINSKDIMINNTLIPISKDFKEFIISSMNS 252
BLAST of mRNA_E-siliculosus-1a_F_contig13553.2121.1 vs. uniprot
Match: A4CLP0_ROBBH (Response Regulator Receiver Signal Transduction Histidine Kinase n=1 Tax=Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) TaxID=313596 RepID=A4CLP0_ROBBH) HSP 1 Score: 335 bits (860), Expect = 1.070e-114 Identity = 170/199 (85.43%), Postives = 178/199 (89.45%), Query Frame = 1
Query: 1 LTDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALANFTYGANGAAKGEQMPSQDDVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKTKFYRAHKSYSVNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS 597
L DIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTV+PNGYLVKPFEQQDLYTSIEIAL+NF YG+ +G+ + D SNSVLKDSIFVKKQHLYYRIQF DI FIKADNVYLEVNT DKKFLVRSPLKDYLEKLP+ KFYRAHKSY VNVDHIDAINS+DIMINN IPISKDFKEFIISAMNS
Sbjct: 54 LIDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVQPNGYLVKPFEQQDLYTSIEIALSNFVYGSKNRPEGDAAEAAADEVTSNSVLKDSIFVKKQHLYYRIQFEDILFIKADNVYLEVNTRDKKFLVRSPLKDYLEKLPRNKFYRAHKSYIVNVDHIDAINSRDIMINNKAIPISKDFKEFIISAMNS 252
BLAST of mRNA_E-siliculosus-1a_F_contig13553.2121.1 vs. uniprot
Match: A0A0S1S9M8_9FLAO (LytTR family transcriptional regulator n=4 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A0S1S9M8_9FLAO) HSP 1 Score: 335 bits (859), Expect = 1.420e-114 Identity = 173/201 (86.07%), Postives = 184/201 (91.54%), Query Frame = 1
Query: 1 LTDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALANFTYGANGAAKGEQMPSQD--DVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKTKFYRAHKSYSVNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS 597
L DIILASDKTGIDLGKHIR+NY+IPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIAL++F Y + KG+ ++D + MSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLP+ KFYRAHKSY VNVDHIDAINSKDIMINN LIPISK+FKEFIISAMNS
Sbjct: 54 LIDIILASDKTGIDLGKHIRDNYNIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALSSFNY----SEKGDNTNNEDGEEKLMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPQNKFYRAHKSYIVNVDHIDAINSKDIMINNTLIPISKEFKEFIISAMNS 250
BLAST of mRNA_E-siliculosus-1a_F_contig13553.2121.1 vs. uniprot
Match: E6X6V7_CELAD (Two component transcriptional regulator, LytTR family n=17 Tax=Flavobacteriaceae TaxID=49546 RepID=E6X6V7_CELAD) HSP 1 Score: 335 bits (858), Expect = 2.310e-114 Identity = 171/201 (85.07%), Postives = 180/201 (89.55%), Query Frame = 1
Query: 1 LTDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALANFTYGANGAAKGEQMPSQ--DDVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKTKFYRAHKSYSVNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS 597
L DIILASDKTGIDLGKHIRE Y+IPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIAL++F Y G+ + DD +SNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLP KFYRAHKSY VNVDHI+AINSKDI+INNNLIPISK+FKEFIISAMNS
Sbjct: 54 LIDIILASDKTGIDLGKHIREKYNIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALSSFNYNEKGSENNNAPVEEVADDKLVSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPSNKFYRAHKSYIVNVDHIEAINSKDILINNNLIPISKEFKEFIISAMNS 254
BLAST of mRNA_E-siliculosus-1a_F_contig13553.2121.1 vs. uniprot
Match: A0A371JVA8_9FLAO (DNA-binding response regulator n=8 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A371JVA8_9FLAO) HSP 1 Score: 333 bits (853), Expect = 1.200e-113 Identity = 172/200 (86.00%), Postives = 180/200 (90.00%), Query Frame = 1
Query: 1 LTDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALANFTYGANGAAKGEQMPSQD-DVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKTKFYRAHKSYSVNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS 597
L DIILASDKTGIDLGKHIR+ Y+IPFIFVTSNSDRATVENAKTVKP+GYLVKPFEQQDLYTSIEIAL+NF Y KG+++ D D SNSVLKDSIFVKKQHLYYRIQF DIQFIKADNVYLEVNT DKKFLVRSPLKDYLEKLPK KFYRAHKSY VNVDHIDAINSKDIMINNNLIPISKDFKEFIIS+MNS
Sbjct: 54 LIDIILASDKTGIDLGKHIRDAYNIPFIFVTSNSDRATVENAKTVKPDGYLVKPFEQQDLYTSIEIALSNFNYSKK--QKGQEVLGNDEDTITSNSVLKDSIFVKKQHLYYRIQFSDIQFIKADNVYLEVNTADKKFLVRSPLKDYLEKLPKNKFYRAHKSYIVNVDHIDAINSKDIMINNNLIPISKDFKEFIISSMNS 251
BLAST of mRNA_E-siliculosus-1a_F_contig13553.2121.1 vs. uniprot
Match: G2PK13_MURRD (Two component transcriptional regulator, LytTR family n=39 Tax=Flavobacteriaceae TaxID=49546 RepID=G2PK13_MURRD) HSP 1 Score: 331 bits (849), Expect = 4.550e-113 Identity = 170/199 (85.43%), Postives = 178/199 (89.45%), Query Frame = 1
Query: 1 LTDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYLVKPFEQQDLYTSIEIALANFTYGANGAAKGEQMPSQDDVPMSNSVLKDSIFVKKQHLYYRIQFGDIQFIKADNVYLEVNTVDKKFLVRSPLKDYLEKLPKTKFYRAHKSYSVNVDHIDAINSKDIMINNNLIPISKDFKEFIISAMNS 597
L DIILASDKTGIDLGKHIR+ Y+IPFIFVTSNSDRATVENAKTVKP+GYLVKPFEQQDLYTSIEIAL+NF Y G K + + D SNSVLKDSIFVKKQHLYYRIQF DIQFIKADNVYLEVNT DKKFLVRSPLKDYLEKLPK KFYRAHKSY VNVDHIDAINSKDIMINNNLIPISKDFKEFI+S+MNS
Sbjct: 54 LIDIILASDKTGIDLGKHIRDTYNIPFIFVTSNSDRATVENAKTVKPDGYLVKPFEQQDLYTSIEIALSNFNYAKKGIDK---VADEADEITSNSVLKDSIFVKKQHLYYRIQFCDIQFIKADNVYLEVNTADKKFLVRSPLKDYLEKLPKNKFYRAHKSYIVNVDHIDAINSKDIMINNNLIPISKDFKEFILSSMNS 249 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13553.2121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13553.2121.1 >prot_E-siliculosus-1a_F_contig13553.2121.1 ID=prot_E-siliculosus-1a_F_contig13553.2121.1|Name=mRNA_E-siliculosus-1a_F_contig13553.2121.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=200bp LTDIILASDKTGIDLGKHIRENYDIPFIFVTSNSDRATVENAKTVKPNGYback to top mRNA from alignment at E-siliculosus-1a_F_contig13553:686..1285- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13553.2121.1 ID=mRNA_E-siliculosus-1a_F_contig13553.2121.1|Name=mRNA_E-siliculosus-1a_F_contig13553.2121.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=600bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13553:686..1285- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13553:686..1285- >mRNA_E-siliculosus-1a_F_contig13553.2121.1 ID=mRNA_E-siliculosus-1a_F_contig13553.2121.1|Name=mRNA_E-siliculosus-1a_F_contig13553.2121.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1200bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13553:686..1285- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |