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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2118.1 vs. uniprot
Match: A0A6H5L0A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A0_9PHAE) HSP 1 Score: 313 bits (803), Expect = 1.690e-99 Identity = 160/198 (80.81%), Postives = 164/198 (82.83%), Query Frame = 3
Query: 186 MGNVSSRSPAMVYKDGNIWNSTFDEAGNSCWMNSATGERAYHFIGGKAVRGPSSAASSPHTMQSPGCVSRRPSDTTSPYAMHSPGHAAPWTAGAPAMHSPGGYVAPAMHHSPSPTGFAAHAVXXXXXXXXXXXXXXXXXXGQAAATMVPY--YHQPGYGGVVPAGDPTPTAAGEAVGYRSSKHYIRPRSKASWMWTQP 773
MGNVSSRSPAMVYKDGNIWNSTFDEAGNSCW+NSATGERAYHFIGGKAVRGPSSAASSPHTMQSPG VSRRPSDTT GHAAPWTAG PAMHSPGGYVAP MHHSPSP GFAAHA+ GQAAATMVPY YHQPGYGGVV AGDPTPTAAGEA+GY SSKHY+RPRSKASWMWTQP
Sbjct: 1 MGNVSSRSPAMVYKDGNIWNSTFDEAGNSCWVNSATGERAYHFIGGKAVRGPSSAASSPHTMQSPGRVSRRPSDTTXXXXXXXXGHAAPWTAGVPAMHSPGGYVAPPMHHSPSPAGFAAHAMHSSAPADLACPTTNHPVPGQAAATMVPYSYYHQPGYGGVVAAGDPTPTAAGEAIGYPSSKHYVRPRSKASWMWTQP 198
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 591 |
| Model size | 2183 |
| Exons | 3 |
| Ec32 ortholog | Ec-12_001620.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1355.2118.1 >prot_E-siliculosus-1a_F_contig1355.2118.1 ID=prot_E-siliculosus-1a_F_contig1355.2118.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2118.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=197bp
MGNVSSRSPAMVYKDGNIWNSTFDEAGNSCWMNSATGERAYHFIGGKAVR
GPSSAASSPHTMQSPGCVSRRPSDTTSPYAMHSPGHAAPWTAGAPAMHSP
GGYVAPAMHHSPSPTGFAAHAVHSPAPAGFAGPAMNHPVPGQAAATMVPY
YHQPGYGGVVPAGDPTPTAAGEAVGYRSSKHYIRPRSKASWMWTQP* back to topmRNA from alignment at E-siliculosus-1a_F_contig1355:15183..20084+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1355.2118.1 ID=mRNA_E-siliculosus-1a_F_contig1355.2118.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2118.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4902bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1355:15183..20084+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTCACGTCCCCCCCGTCTACACATAACTTCCACCCGTCTCGTCACTTCC
AAGCCCTGTGTTTCTAAGGACTTGTCGCCCTTCACCCCCACATCTCCAAT
CTCTCTTATCGTCCAACGGTACAACCGCAAACCTCTCCCACGACAAGACC
CTTACAGCCAGTCAAACGGGCAGCGGTCGGCGAACATGGGAAACGTCTCG
TCTAGGTGAGCGGAACACATCCTGCTGTATCCACGCGCTGCTGAGACGAG
GATCCAGCGTGATTGTCATACGAACGAAGCAACTTCCTGACGACAATAAG
CAAGCCCTTACCCTCATCGAAGCTACTTCTATTGTACGCACAACAAAAAC
CGTTCCATCCATGGGAATCAGCAGCTGATGACGGAGTGGAATTCGGCGAC
AAGCATGCGGAGAGCGCTGCTCATGTATGCGTGCTTCGCACCGTTTCAGC
TGAGCAATCCGCAACAAGACTCAATCTGCTGCTGTAGTACGTCAATACGA
GATACCCTTGTCTGACAGCAATGTTCTCTGGCGCGATAAGACGTTTCGCG
TTTTCCCCGACAGCAGCAAGCAAGGTGTGCGGCACCTCACGTGGCATGTC
TATGCTAAACGTATTCCTCGATCGTCTGACAAACGGTCCCATCAAGTTGT
CAGCGTCATCGCGGAACGCCCCCCCCTGTTCATTTTTTTCCCTCTTTTTC
GCATCCAGGTGGTGGGCACGCACGCAATACGGAAACAAGAGAGCAGGCGT
AGGAAGAGTTCAGACAGATATCTTCGGCGCCTTCGCTGTTGTTCTCATTC
GTACAGAAGATACTCACCATTATGCCGTAGACTGCTGATGTTGCCGACAG
ATAGATCGACCGCACTATCGACGAGGTGCGAGGCGAGGTGTAAACGCCGA
CAAACTTGAGATCCCTCCTCGGGAAAAACTTACTCCAATTTTGCTCGCGA
AAGTTTCGAAGCGCTGTGCTTCCTTTCTAGACGCCAACTTCAACATGGCG
CTACGAAGCACCTCAATTGCCTAGACGAGGGTCAGATCCTTCAGTTTTCA
TATGGAGTGCATGCCCACCACAGGAGATGCTGAACATACATCATCCGTGC
GCCCATACCAACGGGCCCTCCCGGCTGATCCCGCGGAATATCGCGTGCAA
TGACAGACGAACCCGCTCCACGACGCACGGAAATTCATTTTCTCTTCCTG
GCGCAACCAAAACGTGGCACGCTCGCTACACGCGGTGAAAGCCTCACTGT
CACTGCTGCACCGCGCACCACCACACGGTTGGGCACATCGACATGACCCC
AAGAGGGTGTTGAAGAGGACGCTAATCGGGTTTGCATGCAGTCTGTATGT
CCAAGACACTTGGAGACACAAAAAAAAGAGAGAGTGAGGCATTCGGTTCA
GAAAGTTTTTTTGGTCCATGCTACGTCGGTGTAGCGGGCATGATGGAGCA
ACTACCTGCTGCACGTTGCCCGCCCAGATCTATTACTGGGGCCGCGCGGT
CGACGACTGCAGCTGTGGACCAAAAAATCGGGTCGTCCAAGGCAGTGAGT
GGTGGGAGCTACAATACTGCTGTTGTACACCCACAGTTCAGCAGGATTGT
GAATGTCATGGACGACCCAGATTTGCGGACTTTTCCGACCGCAGCTAGCG
GCAGCCCTCGATAGCAAGGCTCCACCATGCCCTCGAATTCAACATCGATG
CAAAATCAACACTTTTGAACGCAAAAAAAGCTGTTCAAGCACCTACTGTG
TCCCCAGTTTCGTCTAGATTTGACTAGGCAGTATGCTGAAGGAGGCCAAT
CTCAGCCGCTGCTCTGTGCGACTCCAATGTTCTTTCTTCCGCAATAGGTA
CTTCCCAACTCTTACGCACCTCGTGTGTGTGAGATCTCTGGATGCGGTTC
CAGTCGGTTTTCGAATCAGTCAAAATCATCACCCCTTCAGAGACCTCGCT
TTCTTTGAAAAAAATACACATTAGATGACGGAAATACTATCTGTTGGAAG
AGATACGCTCCGATCGAAGCGAGTTGTTTGAATGCGTTACAGTGAGTGTT
GAGAAAGACCTACTGAGCCTCTTCAGCGTGCGTATTTAGAAGGGTTCATT
TCTTGTTTAGCTTGGGCAACAACTCCGTTGGGCGGCTGGTCCCTGCCGAG
CAGCCAGGTTGTAAAATTTTCTACGTGTTTTCGCGAATACTCGCTACTTT
TGTTTGTCTTGGCGCTTTCCTCCCTCACGGTCCTCGTCGTGCCGTCCATT
CCTCAGATCTCCGGCAATGGTTTACAAGGACGGCAATATCTGGAACAGCA
CTTTTGACGAAGCTGGAAACAGCTGCTGGTGAGTCTCTTCCACATACCGA
TATCCATCCTTTACATTTGTCGGACCAAACGCTTCGGGCGCGACACAGTG
TCACACGAGCGTAGGTGCGTGTGTGTGTTATTTTTGTTTTTTTTTGTTCA
ATGCCCCCACGTCCCACCCTTTTCCCCGCTAATGTTTGCCTTCGATTTCG
TATCCCGACATTTGTTATTGTCGTTTGGTGTATACTCACGATATATTCGC
TTTCTACCGCAACATTGCCAAGTGTTGACTCCCGAGGGAGATTCGAACCC
ACAACCTGCTACTAATAGTAGATTCATGAGGTTGTCCACTATGTAGAACA
CTGCGCGCCGACTACTTAGTCCTCCACCGGAGTCACCGTTGGTTAACGTA
CAGACTAGGTGCCTTCTATCTAGATTTCGAGCTAACTTTGACGTATCGAG
CTTCCATGTTTGTCGATCAAGTCAACAGCTACGTAATCCCGGGCAGATGA
TTCCTCCTGCATCGCGTATATCTGCCGCCGTCGTCCCCGCCATAGGACCC
CTGATAGCTACCACAGGCTACCAACACACGAACGTTCTCGGAACTGACGC
GTCGACGCCCTTATCAAGAACGTCATCAAGAAGAACGCCGCTGATTTTCC
TCCGTGCCCTTAACGTTCAATGCCTTGTGCTCGACCCTCGACCCAGGATG
AACAGCGCCACCGGCGAGAGAGCCTACCACTTCATCGGCGGCAAGGCCGT
GAGGGGCCCGTCAAGCGCCGCCAGTTCGCCCCACACCATGCAGAGTCCCG
GGTGCGTCTCGCGGCGCCCCTCAGACACCACATCGCCCTACGCCATGCAC
AGCCCCGGGCACGCCGCGCCCTGGACCGCAGGAGCCCCCGCGATGCACAG
CCCGGGAGGCTACGTTGCTCCCGCCATGCATCACAGCCCTTCCCCGACGG
GCTTCGCTGCGCACGCAGTGCACAGCCCTGCGCCTGCGGGTTTTGCTGGC
CCCGCGATGAACCACCCTGTGCCTGGCCAAGCTGCTGCGACCATGGTCCC
CTACTACCACCAGCCGGGCTACGGGGGGGTTGTTCCCGCCGGCGACCCGA
CTCCTACTGCCGCTGGCGAAGCAGTCGGGTATCGCTCGAGCAAGCACTAC
ATCAGGCCTCGCTCAAAGGCGTCGTGGATGTGGACCCAGCCGTAGTGGCG
AGCCCGTTTCTTCCTGACGAGCTCCTGGAATGAATGTCGTCGTTCGGCGT
ACTGTTATCTATGCAAGAGTTGCTGCTGTAGGCATCAAGTAGACCCACGC
TTCGAGATTGTTTCTGTCTGGTGTTTGTGGTACTGTGGTCGGTGTAGGGC
GGTTGTGACGGTTTCAACCCGTTGTTGTTGTGGGTCAAGGGGATACCAGT
CTCCCATCTCTGATATTTCGTTGTTTCAAAAGTAGAACTTCGGCGACACA
TCGGCAAGCAGGCGTGATGTTTTCATTTAGTTTATTTACCAAAGCTACAG
GTTGTGCTGCACCTCCTGCAGATCACCTATCTATGCTACGGCCGGGGTAC
ACAACAAGGAGAGATGTCCCCGTCTGTATATTTGGTGGGCGAGGGGTGTG
CACGGCGTATGAGAGACGCTGACAAGAGCACTCCAAAATCGGTAGCACTA
AACTCCGCCCATACAATGTAAGCGGGTTTCGACTGCTTCGATGTGACCAA
ACAATGCGTCTTTGGTCTTACGTTATTCCAGTGTTGGGTTTTTGTATAAA
ATGATGTTGGGAGTTACATTTTATAGAAGTGAACACGGAATGTTATGTAG
AGAGGTTTGACTCTTCTTTCGCCTTCTGCCGTACAAGCTGTCGGACGATC
CTTGTTTCAATGATCCTTGAGATGCCTATTTCTAGGTCGAGTGTAGTGAG
CACCGTAAACGCCTCGTATGAGCGTTTTTTTTAAGGGCGGTAGAGGGCTT
CATGGCAATAATGCCGTGCTTGTCGTGGGTGACAGGCACGAGAAGTCCAA
GGCCGTTGTTTTCCAAGGCTCCGAGGGTTGGTTGTAGCTTCCGTGGAAGA
ACATGTAAAAAATGTAAAGTTTAGTGTCGACAGTCCACGATACGAGGTAG
TTAGGCTGCCCAGCGGCAGACGTGTGCACGTTCTTTTGCAGGTGGTAGAG
ACGCTGATTTCATGTCACGGGAGGGAGCGCAACTCCCACCGAGGCAGGCT
TAGCTATGTATAGCGAGATACACGATGACCCGTAGCTGGATTGACGAGGC
TAAATGCATCGGTTTGTTGCTGGTGCAGGTTGATCTTTCTGGTACAGGTG
GAGTGGGTCGTTGCCCCCCCCCCCCAAACCAGGAGCCGATCTTCGAACAA
GGCAGAATGGGCGTATTGAGGGTGGACAGACAACTTCTCTATTTGTTCGT
CTTGGTGCACCTGGTGCTCAGCAACGTGAGACGTCGCGTGCATTCAAGTT
CATCAGGTGCAGGATTTTGAAGATTGAATGATGGCGGAAGTGATTTATTG
TTGATGAAAGCGAGTATTTTGCATGTTGTGCATCGGAAAATTAATTCTTT
GGGATGAAACACATGGGGAGGCAGTGGAGAAATGCAAAAGAAGAAAGTGA
GG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1355:15183..20084+ >mRNA_E-siliculosus-1a_F_contig1355.2118.1 ID=mRNA_E-siliculosus-1a_F_contig1355.2118.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2118.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1182bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1355:15183..20084+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGAAACGTCTCGTCTAGATGGGAAACGTCTCGTCTAGATCTCCGGCA
ATGGTTTACAAGGACGGCAATATCTGGAACAGCACTTTTGACGAAGCTGG
AAACAGCTGCTGATCTCCGGCAATGGTTTACAAGGACGGCAATATCTGGA
ACAGCACTTTTGACGAAGCTGGAAACAGCTGCTGGATGAACAGCGCCACC
GGCGAGAGAGCCTACCACTTCATCGGCGGCAAGGCCGTGAGGGGCCCGTC
AAGCGCCGCCAGTTCGCCCCACACCATGCAGAGTCCCGGGTGCGTCTCGC
GGCGCCCCTCAGACACCACATCGCCCTACGCCATGCACAGCCCCGGGCAC
GCCGCGCCCTGGACCGCAGGAGCCCCCGCGATGCACAGCCCGGGAGGCTA
CGTTGCTCCCGCCATGCATCACAGCCCTTCCCCGACGGGCTTCGCTGCGC
ACGCAGTGCACAGCCCTGCGCCTGCGGGTTTTGCTGGCCCCGCGATGAAC
CACCCTGTGCCTGGCCAAGCTGCTGCGACCATGGTCCCCTACTACCACCA
GCCGGGCTACGGGGGGGTTGTTCCCGCCGGCGACCCGACTCCTACTGCCG
CTGGCGAAGCAGTCGGGTATCGCTCGAGCAAGCACTACATCAGGCCTCGC
TCAAAGGCGTCGTGGATGTGGACCCAGCCGTAGGATGAACAGCGCCACCG
GCGAGAGAGCCTACCACTTCATCGGCGGCAAGGCCGTGAGGGGCCCGTCA
AGCGCCGCCAGTTCGCCCCACACCATGCAGAGTCCCGGGTGCGTCTCGCG
GCGCCCCTCAGACACCACATCGCCCTACGCCATGCACAGCCCCGGGCACG
CCGCGCCCTGGACCGCAGGAGCCCCCGCGATGCACAGCCCGGGAGGCTAC
GTTGCTCCCGCCATGCATCACAGCCCTTCCCCGACGGGCTTCGCTGCGCA
CGCAGTGCACAGCCCTGCGCCTGCGGGTTTTGCTGGCCCCGCGATGAACC
ACCCTGTGCCTGGCCAAGCTGCTGCGACCATGGTCCCCTACTACCACCAG
CCGGGCTACGGGGGGGTTGTTCCCGCCGGCGACCCGACTCCTACTGCCGC
TGGCGAAGCAGTCGGGTATCGCTCGAGCAAGCACTACATCAGGCCTCGCT
CAAAGGCGTCGTGGATGTGGACCCAGCCGTAG back to top
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