mRNA_E-siliculosus-1a_F_contig13507.2100.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13507.2100.1
Unique NamemRNA_E-siliculosus-1a_F_contig13507.2100.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13507.2100.1 vs. uniprot
Match: A0A455ULK5_9GAMM (Usp domain-containing protein n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A455ULK5_9GAMM)

HSP 1 Score: 112 bits (279), Expect = 7.260e-31
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 MYQKILLPVDLNEKTSWAKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 165
            MYQKILLPVDLNE+ SW KALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK
Sbjct:    1 MYQKILLPVDLNEEASWQKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 55
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BLAST of mRNA_E-siliculosus-1a_F_contig13507.2100.1 vs. uniprot
Match: A0A0F9YXE3_9ZZZZ (Usp domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A0F9YXE3_9ZZZZ)

HSP 1 Score: 112 bits (281), Expect = 1.020e-30
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 MYQKILLPVDLNEKTSWAKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 165
            MYQKILLPVDLNE+ SWAKALPTAITLC+TFGASLHIVTVLPEFKMPMVGAYFPK
Sbjct:    1 MYQKILLPVDLNEEASWAKALPTAITLCDTFGASLHIVTVLPEFKMPMVGAYFPK 55
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BLAST of mRNA_E-siliculosus-1a_F_contig13507.2100.1 vs. uniprot
Match: A0A124F5Z8_9GAMM (Universal stress protein F n=1 Tax=Halomonas sp. 54_146 TaxID=1635257 RepID=A0A124F5Z8_9GAMM)

HSP 1 Score: 112 bits (279), Expect = 2.050e-30
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 MYQKILLPVDLNEKTSWAKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 165
            MYQKILLPVDLNE+ SW KALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK
Sbjct:    1 MYQKILLPVDLNEEASWKKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 55
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BLAST of mRNA_E-siliculosus-1a_F_contig13507.2100.1 vs. uniprot
Match: A0A2A3XD58_9GAMM (Universal stress protein UspA n=4 Tax=Halomonas TaxID=2745 RepID=A0A2A3XD58_9GAMM)

HSP 1 Score: 110 bits (274), Expect = 1.180e-29
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 MYQKILLPVDLNEKTSWAKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 165
            MYQKILLPVDLNE+ SW KALPTAITLCETFGASLH++TVLPEFK+PMVGAYFPK
Sbjct:    1 MYQKILLPVDLNEEASWKKALPTAITLCETFGASLHVITVLPEFKLPMVGAYFPK 55
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BLAST of mRNA_E-siliculosus-1a_F_contig13507.2100.1 vs. uniprot
Match: H0IYH9_9GAMM (UspF, Universal stress protein n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=H0IYH9_9GAMM)

HSP 1 Score: 109 bits (272), Expect = 2.370e-29
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 MYQKILLPVDLNEKTSWAKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 165
            MYQKILLPVDLNE  SW KALPTAITLC+TFGASLH+VTVLPEFKMPMVGAYFPK
Sbjct:    1 MYQKILLPVDLNEPASWQKALPTAITLCQTFGASLHLVTVLPEFKMPMVGAYFPK 55
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BLAST of mRNA_E-siliculosus-1a_F_contig13507.2100.1 vs. uniprot
Match: A0A3S0YP96_9GAMM (Universal stress protein n=7 Tax=Halomonas TaxID=2745 RepID=A0A3S0YP96_9GAMM)

HSP 1 Score: 108 bits (270), Expect = 4.780e-29
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 MYQKILLPVDLNEKTSWAKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 165
            MYQK+LLPVDLNE+ SW KALPTA+TLC+TFGASLHIV+VLPEFKMPMVGAYFPK
Sbjct:    1 MYQKVLLPVDLNEEASWKKALPTAVTLCQTFGASLHIVSVLPEFKMPMVGAYFPK 55
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BLAST of mRNA_E-siliculosus-1a_F_contig13507.2100.1 vs. uniprot
Match: A0A0D7V2R4_9GAMM (Nucleotide-binding universal stress protein, UspA family n=24 Tax=Halomonadaceae TaxID=28256 RepID=A0A0D7V2R4_9GAMM)

HSP 1 Score: 108 bits (269), Expect = 6.780e-29
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 MYQKILLPVDLNEKTSWAKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 165
            MY K+LLPVDLNE+ SW KALPTAITLC+TFGASLH+VTVLPEFKMPMVGAYFPK
Sbjct:    1 MYHKVLLPVDLNEEASWKKALPTAITLCQTFGASLHVVTVLPEFKMPMVGAYFPK 55
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BLAST of mRNA_E-siliculosus-1a_F_contig13507.2100.1 vs. uniprot
Match: UPI00201ECF3B (universal stress protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201ECF3B)

HSP 1 Score: 108 bits (269), Expect = 6.780e-29
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 MYQKILLPVDLNEKTSWAKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 165
            MYQKILLPVDLNE  SW KALPTAITLC+TFGASLH+VTVLP+FKMPMVGAYFPK
Sbjct:    1 MYQKILLPVDLNEAASWQKALPTAITLCKTFGASLHVVTVLPDFKMPMVGAYFPK 55
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BLAST of mRNA_E-siliculosus-1a_F_contig13507.2100.1 vs. uniprot
Match: A0A1R4I5X0_9GAMM (Universal stress protein n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1R4I5X0_9GAMM)

HSP 1 Score: 107 bits (267), Expect = 1.360e-28
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 MYQKILLPVDLNEKTSWAKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 165
            MYQKILLPVDLNE+ SW KALPTA+TLC+TFGASLHIVTVLPE KMPMVGAYFPK
Sbjct:    1 MYQKILLPVDLNEEGSWKKALPTAVTLCQTFGASLHIVTVLPELKMPMVGAYFPK 55
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2100.1 vs. uniprot
Match: A0A7X4FX60_9GAMM (Universal stress protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A7X4FX60_9GAMM)

HSP 1 Score: 107 bits (266), Expect = 1.940e-28
Identity = 47/55 (85.45%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 MYQKILLPVDLNEKTSWAKALPTAITLCETFGASLHIVTVLPEFKMPMVGAYFPK 165
            MYQKI+LPVDLNE+ SW KALPTAITLC+TFGASLH+VTVLP+FKMP+VGAYFPK
Sbjct:    1 MYQKIMLPVDLNEEASWEKALPTAITLCQTFGASLHVVTVLPDFKMPIVGAYFPK 55
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A455ULK5_9GAMM7.260e-3194.55Usp domain-containing protein n=1 Tax=Halomonas su... [more]
A0A0F9YXE3_9ZZZZ1.020e-3094.55Usp domain-containing protein n=3 Tax=root TaxID=1... [more]
A0A124F5Z8_9GAMM2.050e-3094.55Universal stress protein F n=1 Tax=Halomonas sp. 5... [more]
A0A2A3XD58_9GAMM1.180e-2989.09Universal stress protein UspA n=4 Tax=Halomonas Ta... [more]
H0IYH9_9GAMM2.370e-2990.91UspF, Universal stress protein n=2 Tax=unclassifie... [more]
A0A3S0YP96_9GAMM4.780e-2987.27Universal stress protein n=7 Tax=Halomonas TaxID=2... [more]
A0A0D7V2R4_9GAMM6.780e-2987.27Nucleotide-binding universal stress protein, UspA ... [more]
UPI00201ECF3B6.780e-2989.09universal stress protein n=1 Tax=Halomonas olivari... [more]
A0A1R4I5X0_9GAMM1.360e-2889.09Universal stress protein n=2 Tax=unclassified Halo... [more]
A0A7X4FX60_9GAMM1.940e-2885.45Universal stress protein n=2 Tax=Halomonas TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13507contigE-siliculosus-1a_F_contig13507:1132..1296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size165
Model size165
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.T
EggNOG OGs1RI97@1224,1SDH1@1236,1XMR3@135619,COG0589@1,COG0589@2
EggNOG free text desc.Universal stress protein family
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004017,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006464,GO:0006468,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007155,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018117,GO:0018130,GO:0018175,GO:0019205,GO:0019438,GO:0019538,GO:0019637,GO:0022610,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0036211,GO:0040012,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046777,GO:0046940,GO:0050145,GO:0050789,GO:0050794,GO:0050896,GO:0051270,GO:0055086,GO:0065007,GO:0071704,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:2000145
KEGG koko:K11932,ko:K14061
Preferred nameuspF
Seed eggNOG ortholog1118153.MOY_02089
Seed ortholog evalue1.2e-21
Seed ortholog score108.2
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927866.7225888-CDS-E-siliculosus-1a_F_contig13507:1131..12961622927866.7225888-CDS-E-siliculosus-1a_F_contig13507:1131..1296Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13507 1132..1296 +
1696318715.1813743-CDS-E-siliculosus-1a_F_contig13507:1131..12961696318715.1813743-CDS-E-siliculosus-1a_F_contig13507:1131..1296Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13507 1132..1296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13507.2100.1prot_E-siliculosus-1a_F_contig13507.2100.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13507 1132..1296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13507.2100.1

>prot_E-siliculosus-1a_F_contig13507.2100.1 ID=prot_E-siliculosus-1a_F_contig13507.2100.1|Name=mRNA_E-siliculosus-1a_F_contig13507.2100.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=55bp
MYQKILLPVDLNEKTSWAKALPTAITLCETFGASLHIVTVLPEFKMPMVG
AYFPK
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mRNA from alignment at E-siliculosus-1a_F_contig13507:1132..1296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13507.2100.1 ID=mRNA_E-siliculosus-1a_F_contig13507.2100.1|Name=mRNA_E-siliculosus-1a_F_contig13507.2100.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=165bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13507:1132..1296+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTACCAAAAGATTCTACTGCCAGTGGATTTGAACGAAAAAACTTCGTG
GGCGAAGGCGTTGCCAACCGCAATTACCTTGTGTGAAACCTTTGGGGCGT
CGCTTCATATTGTGACGGTACTACCGGAATTTAAGATGCCCATGGTGGGC
GCTTATTTTCCAAAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13507:1132..1296+

>mRNA_E-siliculosus-1a_F_contig13507.2100.1 ID=mRNA_E-siliculosus-1a_F_contig13507.2100.1|Name=mRNA_E-siliculosus-1a_F_contig13507.2100.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13507:1132..1296+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTACCAAAAGATTCTACTGCCAGTGGATTTGAACGAAAAAACTTCGTG
GGCGAAGGCGTTGCCAACCGCAATTACCTTGTGTGAAACCTTTGGGGCGT
CGCTTCATATTGTGACGGTACTACCGGAATTTAAGATGCCCATGGTGGGC
GCTTATTTTCCAAAAATGTACCAAAAGATTCTACTGCCAGTGGATTTGAA
CGAAAAAACTTCGTGGGCGAAGGCGTTGCCAACCGCAATTACCTTGTGTG
AAACCTTTGGGGCGTCGCTTCATATTGTGACGGTACTACCGGAATTTAAG
ATGCCCATGGTGGGCGCTTATTTTCCAAAA
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