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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig135.2089.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI) HSP 1 Score: 140 bits (354), Expect = 3.290e-31 Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query: 1066 LERKVKKLEKHVPEIDNEPDDDADSGG-LLLKRRAAVTETAEGFLDRARDGAAAAADHHPVTVSDQREFEALLKEVHRDYDARLRALEVQIEKATKRKGR 1362
LERKVKKLE+HVPE+D+EPDDD D GG L L+RR AV+ETA+GFLDRARD AA AADHHPVTVS+QREFEAL E HR+++ARLR LE QI KAT RKGR
Sbjct: 554 LERKVKKLEEHVPELDSEPDDDVDFGGELALRRRVAVSETAKGFLDRARDRAARAADHHPVTVSEQREFEALQNEKHREHEARLRELEGQISKATIRKGR 653
BLAST of mRNA_E-siliculosus-1a_F_contig135.2089.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 136 bits (342), Expect = 2.160e-29 Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query: 1066 LERKVKKLEKHVPEIDNEPDDDADSGG-LLLKRRAAVTETAEGFLDRARDGAAAAADHHPVTVSDQREFEALLKEVHRDYDARLRALEVQIEKATKRKGR 1362
LERKVKKLE+HVPE+D+EPDDD D GG L L+RR AV+ETA+GFLDRARD AA A DHHPVTVS+QREFEAL E HR+++ARLR LE QI KAT R+GR
Sbjct: 749 LERKVKKLEQHVPELDSEPDDDVDFGGELALRRRVAVSETAKGFLDRARDRAARAVDHHPVTVSEQREFEALQDEKHREHEARLRELEGQIIKATIRQGR 848
BLAST of mRNA_E-siliculosus-1a_F_contig135.2089.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 124 bits (310), Expect = 2.390e-25 Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = 1
Query: 1072 RKVKKLEKHVPEIDNEPDDDAD-SGGLLLKRRAAVTETAEGFLDRARDGAAAAADHHPVTVSDQREFEALLKEVHRDYDARLRALEVQIEKATKR-KGR 1362
RKVKKLEKH E+D+EPDDD D GGL +++R AVTETA+GF DRARD A AADHHPVTV++QREFEAL E H ++ARLR LE +I KATKR KGR
Sbjct: 1046 RKVKKLEKHASELDSEPDDDVDYGGGLAVRQRVAVTETAQGFFDRARDRATTAADHHPVTVAEQREFEALQNEKHCGHEARLRELEGEISKATKREKGR 1144
BLAST of mRNA_E-siliculosus-1a_F_contig135.2089.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.190e-14 Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query: 1138 SGGLLLKRRAAVTETAEGFLDRARDGAAAAADHHPVTVSDQREFEALLKEVHRDYDARLRALEVQIEKATKRKGRTMTLH 1377
+GG L+RR AVTETA+GFLDRA+D AA AAD HPVTVS+QREFEAL E HR+++ R R LE +I K +RK + H
Sbjct: 1083 AGGPALRRRVAVTETAQGFLDRAQDRAAGAADLHPVTVSEQREFEALQDEKHREHEERFRELEGEISKVARRKSAAASDH 1162
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 0 |
| Stop | 1 |
| Cds size | 1386 |
| Model size | 2212 |
| Exons | 5 |
| Hectar predicted targeting category | other localisation |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | S |
| EggNOG OGs | 2QVSR@2759,COG4886@1 |
| EggNOG free text desc. | Leucine rich repeat |
| Seed eggNOG ortholog | 2880.D7FHA3 |
| Seed ortholog evalue | 7.1e-30 |
| Seed ortholog score | 138.7 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927864.581026-UTR-E-siliculosus-1a_F_contig135:62592..63417 | 1622927864.581026-UTR-E-siliculosus-1a_F_contig135:62592..63417 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig135 62593..63417 + |
| 1696318714.3881152-UTR-E-siliculosus-1a_F_contig135:62592..63417 | 1696318714.3881152-UTR-E-siliculosus-1a_F_contig135:62592..63417 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig135 62593..63417 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig135.2089.1 >prot_E-siliculosus-1a_F_contig135.2089.1 ID=prot_E-siliculosus-1a_F_contig135.2089.1|Name=mRNA_E-siliculosus-1a_F_contig135.2089.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=462bp
PDREKQQAELDVLKSDNEQQQAELAALKSAEDKQQTELEALASANEKQQT RIEAVESDKAKQQAELDALKSDKEKQQAEFEELQSAKKKQQAELGIFKLT KEKQQARIEAVEFDKAKQQEELDLLKSDREKQQARIEALESDRATHQAEL EALKSDKEKQQAELEKLKFAKEKQEARIEAVESDKKLQQAELDLLKSDRE KQQAELEALQSEKEKEQAELEALQSDKEQQQAELEKLKFAKEKQQARFEA VESDKAKQQEELDLLKSDREKQQARIEALETDRATQQAGLQALKSDKENQ QAELEALQSEKEKQQGELEALQFDKEQQQAELETLASARDKQQAKLEGLT SAKEKLERKVKKLEKHVPEIDNEPDDDADSGGLLLKRRAAVTETAEGFLD RARDGAAAAADHHPVTVSDQREFEALLKEVHRDYDARLRALEVQIEKATK RKGRTMTLHSR* back to topmRNA from alignment at E-siliculosus-1a_F_contig135:59829..63417+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig135.2089.1 ID=mRNA_E-siliculosus-1a_F_contig135.2089.1|Name=mRNA_E-siliculosus-1a_F_contig135.2089.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3589bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:59829..63417+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CCCGACAGGGAGAAGCAGCAAGCAGAGTTAGACGTGCTCAAGTCCGACAA
CGAACAGCAGCAGGCAGAGTTGGCAGCGTTGAAATCCGCCGAAGACAAGC
AACAAACAGAGTTAGAAGCGTTGGCGTCCGCCAACGAGAAGCAGCAAACG
AGAATTGAAGCAGTGGAGTCCGACAAGGCAAAGCAACAAGCAGAGTTGGA
CGCACTCAAGTCCGACAAGGAGAAGCAGCAAGCAGAGTTTGAAGAGCTGC
AGTCCGCCAAGAAGAAGCAGCAAGCAGAGTTGGGAATATTTAAATTGACC
AAAGAGAAGCAGCAAGCGAGAATTGAAGCTGTGGAGTTCGACAAGGCAAA
GCAACAGGAAGAGTTGGACTTACTGAAGTCCGACAGGGAGAAGCAGCAAG
CGAGAATCGAAGCATTGGAGTCCGACCGGGCAACACATCAAGCGGAACTG
GAAGCACTCAAGTCCGACAAGGAGAAGCAGCAGGCCGAGTTGGAAAAGCT
GAAATTCGCCAAGGAGAAGCAGGAAGCGAGAATAGAAGCAGTGGAGTCCG
ACAAAAAACTGCAGCAGGCAGAGTTGGACTTACTGAAGTCCGACAGGGAG
AAGCAGCAGGCAGAGCTGGAAGCGTTGCAGTCCGAGAAGGAAAAAGAGCA
GGCAGAGCTGGAAGCGCTGCAGTCCGACAAGGAGCAGCAGCAAGCAGAGT
TGGAAAAGCTGAAATTCGCCAAGGAGAAGCAGCAAGCGAGATTTGAAGCG
GTGGAGTCCGACAAGGCAAAGCAACAGGAAGAGTTGGACCTACTGAAGTC
CGACAGGGAGAAACAGCAAGCGAGAATCGAAGCACTGGAGACCGATCGGG
CAACACAGCAAGCAGGGTTGCAAGCACTCAAGTCCGACAAGGAGAACCAG
CAGGCAGAGCTGGAAGCGCTGCAGTCCGAGAAGGAAAAACAACAGGGAGA
GCTGGAAGCGCTGCAGTTCGACAAGGAGCAGCAGCAAGCAGAGTTGGAGA
CGTTGGCATCTGCCAGGGATAAGCAACAAGCAAAGTTGGAAGGCTTAACG
TCCGCCAAGGAAAAGCTCGAGCGCAAGGTGAAAGGAGATTGACGCCAATA
GTCAAGGCAACAGGTGCCTGCGTGCTGACCTATGGACTTTTGGCATTTCG
ACGTATTCTGAGTCATGTGTCAACACAGCAACGAGAGGTGTGCTGACAGC
TTTCAACATTCCTTCCCCGCGATGAGAACGCACGTGTCGTTTTTTCGATT
GCATATACATAGGTGAAAAAACTGGAGAAGCATGTCCCGGAGATTGACAA
TGAGCCGGACGATGATGCGGATTCCGGTGAGTCACTTGTTGTACTGCCGC
CATCTACAGCAGTACCACAAGGAATCTTCGGGCGCGATTGACCGAGAGTA
ACCTCTCGGGCATTGTTAGGTTACTGGACCACTAGATTACCAACACACCC
TCCCCGTGTGTATTTTTCACGACCAATGGCAGGGGGGCTGCTTCTCAAAC
GACGGGCGGCTGTAACCGAGACCGCGGAAGGATTTCTGGACAGAGCTCGA
GATGGAGGTGATCCAACGGTCTAGAGCACGCCGGGCTTGGGGCAGGCGTC
GTTGTGTGCCTCTCCTGTACCTGCGTGTTTGCTGGATGTTCTAGACATGT
TGGGAGCGGAGGAGATTCGGGTCAAACTAGGGTTGAGGGTGTAAGCATGT
GCTGATGTTTCGGAACGAGACATTCAGCGATCGCCAAGAACATTTTCAGA
GGGGCAATACCAGGTGTCTGTCGCTATGATGGTTCCAATCGCGAAGCAAT
GTCTATCAGTCCCCGGTGGTTTGAGATTCGCGAAGCACCCGCGCGTACGA
TACGGGAGTATATGTATTTGTCATGAGTAGCTAGCCAAACCTGCGTTAAA
CACAACCTATTTGCCCATTTACACCGTGCAACGTGCCGCCGCCTCCCCTG
CCCACCTGGCCATGCACTTTGGTTGGGCGATTTCGAATATCATGTCACGT
CAGAGACACCCATTTCACTCTCTCGCATACTTACCCTTTCGTTCGTTGCC
GTTCTCTGTTTTTGTGTATCAGCGGCAGCAGCGGCTGATCACCATCCGGT
GACTGTCTCCGACCAAAGAGAGTTCGAGGCGCTGCTGAAGGAAGTTCACC
GTGATTACGATGCGAGACTCCGAGCGCTCGAGGTGCAGATCGAAAAGGCG
ACCAAACGAAAAGGTAAGTCGGCTCGGCATTTCACGTTCTTCTGCCGTAT
TGTCTCTGCGTCTCACAGTACTGGAAGATTTGTACCCGTGCCGACTTGGA
TGTTGAGGGCTCCATCCGAGAGCAACAAGCTGCTGAATTGTCCATTGTTC
GTGTACACTGGGCTCAGCAGTCGTGATTCTACCAGCTTGTCATTTTCTCT
GAATTCTGCGGCGAAACGGTACTGTCAGCAGTCGCCAGCTTGCGCAGATC
GAAGACCACAGCACGTGTAGATTGCGGTGGTTTTGGGTGACTCGTTCGTT
GTTGGTGGCGTGTGGGTTTTTCTTCCACGTCCCTGCCATGTTACTCCGTG
CTCTTATGTGTTCGATATTCGTGGTGAGGTTGGTGATACTGCTGGACAAC
ATCTCGTTGACGGGGAATCCGCTTGCGTGGGCTTTTTGTGTGTCGTCACC
AACTAGACTAATTTTGTGTATACCACATCTGCTCTGTCCGGCGTTCCCCC
ATTGTCCTTTCTCCGGCGATCGGGCTTCATCCCAGGGCGTACGATGACCC
TCCATTCACGCTAGAGTGGAAGGATGCCGTACAATATGTCGTTGTCACAA
ATCTGCACAGCTGCAGATGGGAGTTCTCGACTTTCTGTGGTGTGCACGAC
TGGCTCATGGTGCCACCGTCATAACCGAGGGAGACATCTGCCATATGTTG
TTGGTGTTTCGCCCCTGCAACAGTGGCAGCGTGGAACAACTGTGGGGAAC
TTCGTGGGGTGTGGCATGGGTAACAGGCGGAAGGAGCGCAGCAGGAAGCG
CTCTACAAATGCGAGTAGAACCAGTTCTTATTTGTTTTCGTTTCTCTCTG
CTCGATATGTCTTCGCCCACCTTGACGTATAACGATGTAGGGAATATTCG
CCTTTTTCGCGGGTTGATTTTGTTGGTTAGTGAGTTGGTTCTCCTGACTA
CCCCTCCTTTGTCGTTACCACCAGCGTGCGTACATTGGGAATACCCCCCA
CACCCGAAGACCTGGGTGCACGGGGGTGTGGTCACGCGATACGGTGAGGA
ATCAACGAGGCCTTGTGTCAATGGGAAGGCAGCCACGAGATCAGATTGAC
GCTCAGGACAGAGACCTTGGTGACACCATGTGCGTGGAGGATGACATCGA
TCGTTTGTTTATTTGGAAACCTGCCGTACGCCTTGGGCCTGTGAAGAGCG
AGTACCATGTCGACGAGTAAGGGAAGAGAGGGAGGAGGCGTTGCCGCCTC
GATACCTTGGGCATGCGACTGGCTTGCAAGGTATGGGAGGACCCTTCTTC
TTTCCCCAGCGCAAAGAGCTACAAACGCGATATCCTCCGGGCTTATCAAT
AGTGGAAAGGTCTTCAATTCTTCGTCAGTTTCGATCAAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig135:59829..63417+ >mRNA_E-siliculosus-1a_F_contig135.2089.1 ID=mRNA_E-siliculosus-1a_F_contig135.2089.1|Name=mRNA_E-siliculosus-1a_F_contig135.2089.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2772bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:59829..63417+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CCCGACAGGGAGAAGCAGCAAGCAGAGTTAGACGTGCTCAAGTCCGACAA CGAACAGCAGCAGGCAGAGTTGGCAGCGTTGAAATCCGCCGAAGACAAGC AACAAACAGAGTTAGAAGCGTTGGCGTCCGCCAACGAGAAGCAGCAAACG AGAATTGAAGCAGTGGAGTCCGACAAGGCAAAGCAACAAGCAGAGTTGGA CGCACTCAAGTCCGACAAGGAGAAGCAGCAAGCAGAGTTTGAAGAGCTGC AGTCCGCCAAGAAGAAGCAGCAAGCAGAGTTGGGAATATTTAAATTGACC AAAGAGAAGCAGCAAGCGAGAATTGAAGCTGTGGAGTTCGACAAGGCAAA GCAACAGGAAGAGTTGGACTTACTGAAGTCCGACAGGGAGAAGCAGCAAG CGAGAATCGAAGCATTGGAGTCCGACCGGGCAACACATCAAGCGGAACTG GAAGCACTCAAGTCCGACAAGGAGAAGCAGCAGGCCGAGTTGGAAAAGCT GAAATTCGCCAAGGAGAAGCAGGAAGCGAGAATAGAAGCAGTGGAGTCCG ACAAAAAACTGCAGCAGGCAGAGTTGGACTTACTGAAGTCCGACAGGGAG AAGCAGCAGGCAGAGCTGGAAGCGTTGCAGTCCGAGAAGGAAAAAGAGCA GGCAGAGCTGGAAGCGCTGCAGTCCGACAAGGAGCAGCAGCAAGCAGAGT TGGAAAAGCTGAAATTCGCCAAGGAGAAGCAGCAAGCGAGATTTGAAGCG GTGGAGTCCGACAAGGCAAAGCAACAGGAAGAGTTGGACCTACTGAAGTC CGACAGGGAGAAACAGCAAGCGAGAATCGAAGCACTGGAGACCGATCGGG CAACACAGCAAGCAGGGTTGCAAGCACTCAAGTCCGACAAGGAGAACCAG CAGGCAGAGCTGGAAGCGCTGCAGTCCGAGAAGGAAAAACAACAGGGAGA GCTGGAAGCGCTGCAGTTCGACAAGGAGCAGCAGCAAGCAGAGTTGGAGA CGTTGGCATCTGCCAGGGATAAGCAACAAGCAAAGTTGGAAGGCTTAACG TCCGCCAAGGAAAAGCTCGAGCGCAAGCCCGACAGGGAGAAGCAGCAAGC AGAGTTAGACGTGCTCAAGTCCGACAACGAACAGCAGCAGGCAGAGTTGG CAGCGTTGAAATCCGCCGAAGACAAGCAACAAACAGAGTTAGAAGCGTTG GCGTCCGCCAACGAGAAGCAGCAAACGAGAATTGAAGCAGTGGAGTCCGA CAAGGCAAAGCAACAAGCAGAGTTGGACGCACTCAAGTCCGACAAGGAGA AGCAGCAAGCAGAGTTTGAAGAGCTGCAGTCCGCCAAGAAGAAGCAGCAA GCAGAGTTGGGAATATTTAAATTGACCAAAGAGAAGCAGCAAGCGAGAAT TGAAGCTGTGGAGTTCGACAAGGCAAAGCAACAGGAAGAGTTGGACTTAC TGAAGTCCGACAGGGAGAAGCAGCAAGCGAGAATCGAAGCATTGGAGTCC GACCGGGCAACACATCAAGCGGAACTGGAAGCACTCAAGTCCGACAAGGA GAAGCAGCAGGCCGAGTTGGAAAAGCTGAAATTCGCCAAGGAGAAGCAGG AAGCGAGAATAGAAGCAGTGGAGTCCGACAAAAAACTGCAGCAGGCAGAG TTGGACTTACTGAAGTCCGACAGGGAGAAGCAGCAGGCAGAGCTGGAAGC GTTGCAGTCCGAGAAGGAAAAAGAGCAGGCAGAGCTGGAAGCGCTGCAGT CCGACAAGGAGCAGCAGCAAGCAGAGTTGGAAAAGCTGAAATTCGCCAAG GAGAAGCAGCAAGCGAGATTTGAAGCGGTGGAGTCCGACAAGGCAAAGCA ACAGGAAGAGTTGGACCTACTGAAGTCCGACAGGGAGAAACAGCAAGCGA GAATCGAAGCACTGGAGACCGATCGGGCAACACAGCAAGCAGGGTTGCAA GCACTCAAGTCCGACAAGGAGAACCAGCAGGCAGAGCTGGAAGCGCTGCA GTCCGAGAAGGAAAAACAACAGGGAGAGCTGGAAGCGCTGCAGTTCGACA AGGAGCAGCAGCAAGCAGAGTTGGAGACGTTGGCATCTGCCAGGGATAAG CAACAAGCAAAGTTGGAAGGCTTAACGTCCGCCAAGGAAAAGCTCGAGCG CAAGGTGAAAAAACTGGAGAAGCATGTCCCGGAGATTGACAATGAGCCGG ACGATGATGCGGATTCCGGTGAAAAAACTGGAGAAGCATGTCCCGGAGAT TGACAATGAGCCGGACGATGATGCGGATTCCGGGGGGCTGCTTCTCAAAC GACGGGCGGCTGTAACCGAGACCGCGGAAGGATTTCTGGACAGAGCTCGA GATGGAGGGGGGCTGCTTCTCAAACGACGGGCGGCTGTAACCGAGACCGC GGAAGGATTTCTGGACAGAGCTCGAGATGGAGCGGCAGCAGCGGCTGATC ACCATCCGGTGACTGTCTCCGACCAAAGAGAGTTCGAGGCGCTGCTGAAG GAAGTTCACCGTGATTACGATGCGAGACTCCGAGCGCTCGAGGTGCAGAT CGAAAAGGCGACCAAACGAAAAGCGGCAGCAGCGGCTGATCACCATCCGG TGACTGTCTCCGACCAAAGAGAGTTCGAGGCGCTGCTGAAGGAAGTTCAC CGTGATTACGATGCGAGACTCCGAGCGCTCGAGGTGCAGATCGAAAAGGC GACCAAACGAAAAGGGCGTACGATGACCCTCCATTCACGCTAGGGCGTAC GATGACCCTCCATTCACGCTAG back to top
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