mRNA_E-siliculosus-1a_F_contig135.2085.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig135.2085.1
Unique NamemRNA_E-siliculosus-1a_F_contig135.2085.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig135.2085.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 9.510e-19
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 2 
Query:   11 GGPRLMGSTTFTDNAAYRSGEIYTDNGFLEDGDPVSITTFPDDTAFEGNRADNCPDVSNGDDDNCPEV 214
            G   LMGSTTF +NAAY  G IYTD+G + +G+  S+TTFPDDT FE NRAD CPDV +GD+DNCP V
Sbjct:  314 GAVTLMGSTTFRENAAYEGGAIYTDDGSVANGEAASVTTFPDDTVFEDNRADFCPDVFDGDNDNCPVV 381
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BLAST of mRNA_E-siliculosus-1a_F_contig135.2085.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.400e-18
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 2 
Query:   23 LMGSTTFTDNAAYRSGEIYTDNGFLEDGDPVSITTFPDDTAFEGNRADNCPDVSNGDDDNCPEV 214
            LMGSTTF +NAA+  G IYT +G  E+G+P S+TTFPDDT FE N A++CPDV NGD DNCP V
Sbjct:  318 LMGSTTFRENAAFMGGAIYTSDGDEENGEPASVTTFPDDTVFEDNSAEHCPDVHNGDSDNCPVV 381
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BLAST of mRNA_E-siliculosus-1a_F_contig135.2085.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.740e-14
Identity = 40/65 (61.54%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:   23 LMGSTTFTDNAAYRSGEIYTDNGFLEDGDPVSITTFPDDTAFEGNRADN-CPDVSNGDDDNCPEV 214
            LMG TTF +N A+  G IYTD+G+     P S+TTFPDDT FE N AD  CPDV NGDD+NCP V
Sbjct:  113 LMGPTTFRENGAWWGGAIYTDDGY-----PASVTTFPDDTVFEDNSADAYCPDVHNGDDNNCPVV 172
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BLAST of mRNA_E-siliculosus-1a_F_contig135.2085.1 vs. uniprot
Match: D7FL58_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL58_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 5.980e-5
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 2 
Query:   68 GEIYTDNGFLEDGDPVSITTFPDDTAFEGNRADNCPDVSNGDDDNCPEV 214
            G IYT++    DG P S+TTFPDD      RA+ CPDV NGDDDNCP V
Sbjct:  218 GAIYTNDA---DG-PGSVTTFPDDXXXXXXRAEYCPDVHNGDDDNCPVV 262
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig135.2085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJ44_ECTSI9.510e-1964.71Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FLJ6_ECTSI3.400e-1865.63Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FQG1_ECTSI1.740e-1461.54Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FL58_ECTSI5.980e-559.18Asn/thr-rich large protein family protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig135contigE-siliculosus-1a_F_contig135:22129..24368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size192
Model size761
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig135.2085.1prot_E-siliculosus-1a_F_contig135.2085.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig135 22673..24343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927864.9246647-UTR-E-siliculosus-1a_F_contig135:22128..226721622927864.9246647-UTR-E-siliculosus-1a_F_contig135:22128..22672Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 22129..22672 -
1696318714.5333195-UTR-E-siliculosus-1a_F_contig135:22128..226721696318714.5333195-UTR-E-siliculosus-1a_F_contig135:22128..22672Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 22129..22672 -
1622927864.97075-UTR-E-siliculosus-1a_F_contig135:24343..243681622927864.97075-UTR-E-siliculosus-1a_F_contig135:24343..24368Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 24344..24368 -
1696318714.5625396-UTR-E-siliculosus-1a_F_contig135:24343..243681696318714.5625396-UTR-E-siliculosus-1a_F_contig135:24343..24368Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 24344..24368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927864.9409764-CDS-E-siliculosus-1a_F_contig135:22672..227231622927864.9409764-CDS-E-siliculosus-1a_F_contig135:22672..22723Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 22673..22723 -
1696318714.5430071-CDS-E-siliculosus-1a_F_contig135:22672..227231696318714.5430071-CDS-E-siliculosus-1a_F_contig135:22672..22723Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 22673..22723 -
1622927864.9576204-CDS-E-siliculosus-1a_F_contig135:24202..243431622927864.9576204-CDS-E-siliculosus-1a_F_contig135:24202..24343Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 24203..24343 -
1696318714.552836-CDS-E-siliculosus-1a_F_contig135:24202..243431696318714.552836-CDS-E-siliculosus-1a_F_contig135:24202..24343Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 24203..24343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig135.2085.1

>prot_E-siliculosus-1a_F_contig135.2085.1 ID=prot_E-siliculosus-1a_F_contig135.2085.1|Name=mRNA_E-siliculosus-1a_F_contig135.2085.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=64bp
MGSTTFTDNAAYRSGEIYTDNGFLEDGDPVSITTFPDDTAFEGNRADNCP
DVSNGDDDNCPEV*
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mRNA from alignment at E-siliculosus-1a_F_contig135:22129..24368-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig135.2085.1 ID=mRNA_E-siliculosus-1a_F_contig135.2085.1|Name=mRNA_E-siliculosus-1a_F_contig135.2085.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2240bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:22129..24368- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGGTGTGTAGGTGGTCCAAGGCTAATGGGCTCAACAACTTTCACTGACA
ACGCGGCGTACCGGAGTGGAGAAATTTACACCGACAACGGCTTTTTGGAA
GATGGCGATCCCGTATCGATTACCACATTCCCCGATGACACCGCGTTCGA
AGGCAATAGAGCGGATGTGAGTGTTTTGATGCCCCAAACCTCGTGGTTGA
CACCGAAACTGAAACCCACTAATAGCAGAGGAGCAGTTTGGATGCATTGA
GGCGCTGTGTGGTAAGTTGGACACTAACTCGAACCTACGGGAGGCTGGGT
GCCTCACTCATGAGTATTGGGCGGTGGCCCCTCGCACCATCAATGATCGT
CTGACTCGCGTATTGCCGCCCAACCTCTCGGAAAGACCACCACACTCTCC
CTCGTAATACCGACTTGGCTCTGGTGCCGCTAGATGGAGAATCGTCTTGA
GTGATGGATATGTCACGATAGCAAACTCATATGCCGTTGAAGCGCAGGAT
TCGAGCCTGAGAGAGAGAGTGGATGGCAATGGTTGAAATCACCACCCGTC
TGTCTCCGTCGTTAATCGACTGGTTCGTCGCAAGAGTGCAGAAGTAGTAG
CAACAGTTTCACCCATCAGAGGGGAATATGAAGCGATGCCTCTTCTAACG
CTTGGGGTCTTTGCTTTCTCGAGAAAACTCCTGGGGGTGGACGTGCGAAA
GCATTTCGACCGAGAAAAACGGAGCACGAATCCGGCCTCGACGATGATCT
TAGCAACGTATCGCGGTTGACCACTCTGAACCCAAGCAATGGAAATTATA
ACAATTTTTGTGGTAAGGCTCGTTGTTGTCGAGGGGGTGCGGACGGAAGG
TTGAGGACGGACGCCACATCAACTGAACTAATGTATCGCTTGTTGTGTGG
ACACAAGGGTTGTTTATTCGATTCATGCACGTAGTGGCAGAGCACGTTCT
TCTTGGGCAGTGGGAACCTAATGGGGATGCAGGAACATCCCCATGCGCTG
CAATCCTGTTCTACTACACCGTTTCTTCGTTTGGCTTCGAGGAGGATCTC
GACGTGGCAGGTCAGCTATCGAAGTTTGCCCTCCGCAGCCAGGCCAAGGA
TGGTGATGCACGCAATTTCTTCCACCCACAAGCAACCTAACTATTTGCAT
CTTTGGCAGGAACTTGCCTCGTGACGACAAATGTCGTCATGCGATGCGAG
AGCGAATATGAAACGAGGCTTGTGCGCCAACCTTTTGCATCTTGGCCAGT
GCTTCGTTGTTGATCCGAAAGAAAAGTACTCAATGCAATACACCGAACCA
AATAGACAACGCGCGAAATTAATTTTGTTCAGATTATATAATAGTTGGAT
TTGCTCCACGAACCACTTGGAGCGCTCTGGGCAAGGTCTTGGAATACGTA
GGTGTAGGTAGGTGTGGCGATGCGACTACATGTAGCGTGCACGATTTGCC
TCGGTTGTTATCCGTTAGTGCGACACACAGAGGCGTGTTCCTGGACACAA
CGATATCAAGCTTTGTGATGAACCTACGGCTCTGACGAAAATGTTTCGGG
TGTATGCAAGTTTTGTCAACCGATCCTCGTGTGTCAGTCTCAAATGAACT
CCACCCCCTCTGTTGGACCATGACCCCTGCTGTACGTTGAACCAGAACTG
CCCGGACGTGAGTAACGGCGACGACGATAACTGTCCCGAAGTGTGAACGC
GTCCATCAGCCACCCATTGGGGAAGATCTGCAAAATGGAGAAGTAGAGCT
GTAGCCATGAAAGAGTGAGAGTTTGACAGGAAACCGAAGCATTCGGAGCG
CGTTGTGTCGGAGAGTTCTGCTACTACTGTAGATCTATAGTAAGATCGGT
TCTTCGAGCGCTCTATAGGAAGAAGGCTGATCGACTGACTAGTGGTGTGG
CCCAAAAGGTACAATAGACGTCTGTGATTTCACTGATACCTGCAGCAGAT
GTTCAAGTACGTGCAGCCTCGAAGGTTGTGGCTGCATCATTCCCTTATTT
TGAATAGGTAGAGTGCAGATCGCCGATAGGGCGAGGTTAACAGTTCTACG
GCGAGTCCCGACGAGTATGCGAGGAAGGGGAGGATGTATGGACTGTAACC
CGCGGGGTGCTCAAAACGGAAATCGATAGATGCTACGAGAAACGTTGGGA
TGAAACTATCGACATCCCTTGTCCTAGTCAGTGACAACAGAGGTTACAGT
TTTTTTTATCTACGCCCTTTGGGGGCAGTTGACTTGTGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig135:22129..24368-

>mRNA_E-siliculosus-1a_F_contig135.2085.1 ID=mRNA_E-siliculosus-1a_F_contig135.2085.1|Name=mRNA_E-siliculosus-1a_F_contig135.2085.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:22129..24368- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCTCAACAACTTTCACTGACAACGCGGCGTACCGGAGTGGAGAAAT
TTACACCGACAACGGCTTTTTGGAAGATGGCGATCCCGTATCGATTACCA
CATTCCCCGATGACACCGCGTTCGAAGGCAATAGAGCGGATATGGGCTCA
ACAACTTTCACTGACAACGCGGCGTACCGGAGTGGAGAAATTTACACCGA
CAACGGCTTTTTGGAAGATGGCGATCCCGTATCGATTACCACATTCCCCG
ATGACACCGCGTTCGAAGGCAATAGAGCGGATAACTGCCCGGACGTGAGT
AACGGCGACGACGATAACTGTCCCGAAGTGTGAAACTGCCCGGACGTGAG
TAACGGCGACGACGATAACTGTCCCGAAGTGTGA
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