mRNA_E-siliculosus-1a_F_contig135.2084.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig135.2084.1
Unique NamemRNA_E-siliculosus-1a_F_contig135.2084.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig135.2084.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 4.290e-93
Identity = 157/204 (76.96%), Postives = 174/204 (85.29%), Query Frame = 3 
Query:  531 TEDSTEMGKAGAISNTGSGTILFNAKLTMNDNEAEGFFEGLGGGIYNRGDIVVEGESYFSRNIAADGGGIY*TSIGTMAFNGMATFSGNSAYELRGGGLMNNGGLVNFNASSLFKGNVASGSGDGGLGGAIYNGGGGTVTLMGSTNFTDNSAYWGGAIYTDDGDVEDDEPASVTTFPDDTVFEGNIAEYCPDVNNGDNVNCPVV 1142
            TEDS E GKAGAISNTGSGTILF +KLTM DNEA+GFFEG+GG IYNRG+IVVEGES FS N ++DGGGIY TSIGTM FNG ATFS NSAY+L GGGLMN+GG+VN NA SLF+ N ASGSGDGGLGGAIYN   G VTLMGST F +N+A+ GGAIYT DGD E+ EPASVTTFPDDTVFE N AE+CPDV+NGD+ NCPVV
Sbjct:  178 TEDSVEQGKAGAISNTGSGTILFKSKLTMKDNEADGFFEGIGGAIYNRGEIVVEGESLFSLNTSSDGGGIYQTSIGTMTFNGAATFSENSAYDLLGGGLMNDGGVVNINAGSLFELNGASGSGDGGLGGAIYNTNAGVVTLMGSTTFRENAAFMGGAIYTSDGDEENGEPASVTTFPDDTVFEDNSAEHCPDVHNGDSDNCPVV 381
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig135.2084.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 1.280e-91
Identity = 158/207 (76.33%), Postives = 171/207 (82.61%), Query Frame = 3 
Query:  522 AADTEDSTEMGKAGAISNTGSGTILFNAKLTMNDNEAEGFFEGLGGGIYNRGDIVVEGESYFSRNIAADGGGIY*TSIGTMAFNGMATFSGNSAYELRGGGLMNNGGLVNFNASSLFKGNVASGSGDGGLGGAIYNGGGGTVTLMGSTNFTDNSAYWGGAIYTDDGDVEDDEPASVTTFPDDTVFEGNIAEYCPDVNNGDNVNCPVV 1142
            A  TEDS E GKAGAISNTGSGTI F +KLTM DNEAEGFFEGLGG IYNRG+I+V+GES FS N A+DGGGIY T IG M FN MATFS NSAYELRGGGLMN GG+VN NA SLF+ N ASGSGDGGLGGAIYNG  G VTLMGST F +N+AY GGAIYTDDG V + E ASVTTFPDDTVFE N A++CPDV +GDN NCPVV
Sbjct:  175 AVHTEDSVEQGKAGAISNTGSGTIWFKSKLTMKDNEAEGFFEGLGGAIYNRGEIIVDGESLFSLNTASDGGGIYQTPIGKMTFNSMATFSENSAYELRGGGLMNYGGVVNINAGSLFELNGASGSGDGGLGGAIYNGNEGAVTLMGSTTFRENAAYEGGAIYTDDGSVANGEAASVTTFPDDTVFEDNRADFCPDVFDGDNDNCPVV 381
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig135.2084.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 4.120e-65
Identity = 118/177 (66.67%), Postives = 136/177 (76.84%), Query Frame = 3 
Query:  615 MNDNEAEGFFEGLGGGIYNRGDIVVEGESYFSRNIAADGGGIY*TSIGTMAFNGMATFSGNSAYELRGGGLMNNGGLVNFNASSLFKGNVASGSGDGGLGGAIYNGGGGTVTLMGSTNFTDNSAYWGGAIYTDDGDVEDDEPASVTTFPDDTVFEGNIAE-YCPDVNNGDNVNCPVV 1142
            MN+N+ +G + GLGG IYNRG+I VEGES FS N ++DGGGIY TSIG M FN MATF  N A  LRGGGLMN+GG+VN NA SLF+ N A+ + DGG GGAI+N  GG VTLMG T F +N A+WGGAIYTDDG      PASVTTFPDDTVFE N A+ YCPDV+NGD+ NCPVV
Sbjct:    1 MNENDTDGQYGGLGGAIYNRGEITVEGESLFSENRSSDGGGIYQTSIGIMTFNSMATFFHNVAENLRGGGLMNDGGVVNINAGSLFEQNFAAANADGGRGGAIHNRNGGVVTLMGPTTFRENGAWWGGAIYTDDG-----YPASVTTFPDDTVFEDNSADAYCPDVHNGDDNNCPVV 172
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig135.2084.1 vs. uniprot
Match: D7FL58_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL58_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 1.030e-64
Identity = 127/206 (61.65%), Postives = 141/206 (68.45%), Query Frame = 3 
Query:  525 ADTEDSTEMGKAGAISNTGSGTILFNAKLTMNDNEAEGFFEGLGGGIYNRGDIVVEGESYFSRNIAADGGGIY*TSIGTMAFNGMATFSGNSAYELRGGGLMNNGGLVNFNASSLFKGNVASGSGDGGLGGAIYNGGGGTVTLMGSTNFTDNSAYWGGAIYTDDGDVEDDEPASVTTFPDDTVFEGNIAEYCPDVNNGDNVNCPVV 1142
            A TE S + G  GAISNTGSGTILF +KLTM DN+A+  F GLGG IYNRG+I+VEG S FS N AA GGGI+ TSIGTM FNGMATFS N A E  GGGL NNGG+VN NA SLF+ N AS SGDGG GGAI+N                   +WGGAIYT+D D     P SVTTFPDD       AEYCPDV+NGD+ NCPVV
Sbjct:   61 AHTESSNQRGNGGAISNTGSGTILFKSKLTMKDNQADANFAGLGGAIYNRGEIIVEGASLFSLNHAAAGGGIHQTSIGTMTFNGMATFSENFAGEPTGGGLTNNGGVVNINAGSLFEHNWASASGDGGFGGAIFNTKXXXXXXXXXXXXXXXXXHWGGAIYTNDADG----PGSVTTFPDDXXXXXXRAEYCPDVHNGDDDNCPVV 262
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig135.2084.1 vs. uniprot
Match: D7FQG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG2_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 6.860e-43
Identity = 89/107 (83.18%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 MKPASLAVIASLLAALATAVEYTVMTCADLADVDDTQVTGRTIDASTFACDEYTRFRVRNSMALKATVPAVEFGNFSLKVLGELTVEPDVTFNGVVDQVKNGGVLSV 321
            MKP SL  IASLLA  A AVEY V TCADLADVDDTQVTG TIDA+TFACDEYTRFRVRNSM LKATV AVEFGNFSLKVLGELTVEPDVTFNGVVDQ   G   SV
Sbjct:    1 MKPVSLTFIASLLATPAAAVEYMVTTCADLADVDDTQVTGLTIDANTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQSSEGTTPSV 107
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig135.2084.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 5.340e-28
Identity = 83/192 (43.23%), Postives = 103/192 (53.65%), Query Frame = 3 
Query:  552 GKAGAISNTGSGTILFNAKLTMNDNEAEGFFEGL-GGGIYNRGDIVVEGESYFSRNIAADGGGIY*TSIGTMAFNGMATFSGNSAYELRGGGLMNNGGLVNFNASSLFKGNVASGSGDGGLGGAIYNGGGGTVTLMGSTNFTDNSAYWGGAIYTDDGD-----VEDDEPASVT-TFPDDTVFEGNIAEYCPD 1106
            G  GAIS    G+I F  KLTM DNEA+ +F G  GG I+NRGDIVV+GE+ F+ NI   GG I+     T+ FN   TF+ N   +  GG + N GG V  NA SLF    A  SGDGGL             L GST F  N   WGGA++           ED+     T ++P+DT+FE N A+YC D
Sbjct:  175 GPGGAISVHVKGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGRGGAIFQEKWATLVFNDFVTFTSNKCLDTFGGTIANIGGDVTANAGSLFFDGFAENSGDGGLXXXXXXXXXXXXXLTGSTTFRQNYGNWGGAVFNSAVPNAYFTAEDESYVMPTISYPEDTIFEDNDAQYCND 366
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig135.2084.1 vs. uniprot
Match: A0A1A9LF56_9FLAO (Por_Secre_tail domain-containing protein n=2 Tax=Aequorivita soesokkakensis TaxID=1385699 RepID=A0A1A9LF56_9FLAO)

HSP 1 Score: 63.2 bits (152), Expect = 2.100e-6
Identity = 54/138 (39.13%), Postives = 77/138 (55.80%), Query Frame = 3 
Query:  534 EDSTEMGKAGAIS-NTGSG-TILFNAKLTMNDNEAEGFFEGLGGGIY--NRGDIVVEGESYFSRNIAADGGGIY*TSIGTMAFNGMATFSGNSAY--ELRGGGLMNNGGLVNFNASSLFKGNVASGSGDGGLGGAIYN 929
            ED+T     GAI  N+  G T  FN  + MN N A     G GGG++    G++   G S  + NIA +GGG++    GTM  +G  T +GN A      GGG+ NNGG++N ++++    NVA G+  GG GGA++N
Sbjct:  789 EDNTANRAGGAIELNSAMGETYTFN-DVVMNQNTANAPAPGNGGGLHISGPGNVNYSGGSV-TNNIAFEGGGLW-NGTGTMTVSG-TTITGNKATGDATGGGGIFNNGGILNVDSATNLTANVAMGATPGGRGGALFN 922
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig135.2084.1 vs. uniprot
Match: A0A7K1GDA2_9FLAO (T9SS type A sorting domain-containing protein n=1 Tax=Winogradskyella ouciana TaxID=2608631 RepID=A0A7K1GDA2_9FLAO)

HSP 1 Score: 61.2 bits (147), Expect = 7.780e-6
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 3 
Query:  648 GLGGGIY--NRGDIVVEGESYFSRNIAADGGGIY*TSIGTMAFNGMATFSGNSAY--ELRGGGLMNNGGLVNFNASSLFKGNVASGSGDGGLGGAIYNGGGGTVTLMGSTNFTDNSAYW-GGAI 1004
            G GGG++    GD  + G +        +GGG++    G M   G    +GNSA      GGGL NNGG+++ +A++   GN+A G+  GG GGAI+N  GGT+ L      + N A   GGAI
Sbjct:  207 GNGGGLHITGAGDANITGGTANGNIAGKEGGGLW-NGSGAMTITG-TIITGNSAIGDATGGGGLFNNGGIIDVDATTTLSGNIAMGATPGGRGGAIFNNTGGTLNLASGLTISGNYASRAGGAI 328
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig135.2084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FLJ6_ECTSI4.290e-9376.96Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI1.280e-9176.33Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FQG1_ECTSI4.120e-6566.67Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FL58_ECTSI1.030e-6461.65Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FQG2_ECTSI6.860e-4383.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTD4_9PHAE5.340e-2843.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1A9LF56_9FLAO2.100e-639.13Por_Secre_tail domain-containing protein n=2 Tax=A... [more]
A0A7K1GDA2_9FLAO7.780e-637.90T9SS type A sorting domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig135contigE-siliculosus-1a_F_contig135:10949..19314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size495
Model size2195
Exons8
Ec32 orthologEc-01_006220.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927864.7766688-CDS-E-siliculosus-1a_F_contig135:10948..112421622927864.7766688-CDS-E-siliculosus-1a_F_contig135:10948..11242Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 10949..11242 +
1696318714.424901-CDS-E-siliculosus-1a_F_contig135:10948..112421696318714.424901-CDS-E-siliculosus-1a_F_contig135:10948..11242Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 10949..11242 +
1622927864.7908936-CDS-E-siliculosus-1a_F_contig135:11883..120841622927864.7908936-CDS-E-siliculosus-1a_F_contig135:11883..12084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 11884..12084 +
1696318714.4321306-CDS-E-siliculosus-1a_F_contig135:11883..120841696318714.4321306-CDS-E-siliculosus-1a_F_contig135:11883..12084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 11884..12084 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927864.8057957-UTR-E-siliculosus-1a_F_contig135:12084..121171622927864.8057957-UTR-E-siliculosus-1a_F_contig135:12084..12117Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 12085..12117 +
1696318714.4420881-UTR-E-siliculosus-1a_F_contig135:12084..121171696318714.4420881-UTR-E-siliculosus-1a_F_contig135:12084..12117Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 12085..12117 +
1622927864.8175435-UTR-E-siliculosus-1a_F_contig135:14332..144391622927864.8175435-UTR-E-siliculosus-1a_F_contig135:14332..14439Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 14333..14439 +
1696318714.4518394-UTR-E-siliculosus-1a_F_contig135:14332..144391696318714.4518394-UTR-E-siliculosus-1a_F_contig135:14332..14439Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 14333..14439 +
1622927864.8324018-UTR-E-siliculosus-1a_F_contig135:15005..150951622927864.8324018-UTR-E-siliculosus-1a_F_contig135:15005..15095Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 15006..15095 +
1696318714.4690657-UTR-E-siliculosus-1a_F_contig135:15005..150951696318714.4690657-UTR-E-siliculosus-1a_F_contig135:15005..15095Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 15006..15095 +
1622927864.8485126-UTR-E-siliculosus-1a_F_contig135:15335..154191622927864.8485126-UTR-E-siliculosus-1a_F_contig135:15335..15419Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 15336..15419 +
1696318714.4903262-UTR-E-siliculosus-1a_F_contig135:15335..154191696318714.4903262-UTR-E-siliculosus-1a_F_contig135:15335..15419Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 15336..15419 +
1622927864.8598356-UTR-E-siliculosus-1a_F_contig135:15846..159861622927864.8598356-UTR-E-siliculosus-1a_F_contig135:15846..15986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 15847..15986 +
1696318714.502688-UTR-E-siliculosus-1a_F_contig135:15846..159861696318714.502688-UTR-E-siliculosus-1a_F_contig135:15846..15986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 15847..15986 +
1622927864.874337-UTR-E-siliculosus-1a_F_contig135:16881..170261622927864.874337-UTR-E-siliculosus-1a_F_contig135:16881..17026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 16882..17026 +
1696318714.512374-UTR-E-siliculosus-1a_F_contig135:16881..170261696318714.512374-UTR-E-siliculosus-1a_F_contig135:16881..17026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 16882..17026 +
1622927864.885295-UTR-E-siliculosus-1a_F_contig135:18213..193141622927864.885295-UTR-E-siliculosus-1a_F_contig135:18213..19314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 18214..19314 +
1696318714.5222275-UTR-E-siliculosus-1a_F_contig135:18213..193141696318714.5222275-UTR-E-siliculosus-1a_F_contig135:18213..19314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig135 18214..19314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig135.2084.1prot_E-siliculosus-1a_F_contig135.2084.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig135 10949..12084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig135.2084.1

>prot_E-siliculosus-1a_F_contig135.2084.1 ID=prot_E-siliculosus-1a_F_contig135.2084.1|Name=mRNA_E-siliculosus-1a_F_contig135.2084.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=165bp
MKPASLAVIASLLAALATAVEYTVMTCADLADVDDTQVTGRTIDASTFAC
DEYTRFRVRNSMALKATVPAVEFGNFSLKVLGELTVEPDVTFNGVVDQVK
NGGVLSVAEGATATFMGMSEFSDNSVAVKQIGPISCGDGCTTIGAGLSYI
VKKGGAIHNKASPH*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig135:10949..19314+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig135.2084.1 ID=mRNA_E-siliculosus-1a_F_contig135.2084.1|Name=mRNA_E-siliculosus-1a_F_contig135.2084.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8366bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:10949..19314+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGCCTGCCTCTCTCGCGGTCATCGCCAGTCTTCTGGCAGCGCTAGC
TACGGCGGTCGAGTACACCGTCATGACTTGTGCTGACCTTGCGGACGTCG
ACGATACCCAGGTCACAGGCCGTACCATCGACGCCAGCACCTTCGCCTGC
GATGAGTACACCCGCTTCCGTGTCCGCAACTCCATGGCCCTCAAGGCGAC
AGTTCCCGCAGTGGAGTTCGGGAACTTCTCGCTGAAGGTCCTCGGAGAGC
TGACGGTCGAGCCCGACGTCACGTTCAACGGCGTCGTTGACCAGGTGCGA
GGTCTGGACGTCTGGACGGACACGAGCGAGGGAATCACAAGAAAATTAAA
GGAAGCTTCTCTCCCCTTCGGCATTAAAAATGGCGGCAGATATGTGTATT
TGGAACAAACATCCCTCCACGCAGAGGGTAGGAGACGTTTATCTGGTGTT
TTACTGGGGGCAGTGCCTCACGCCTGCCGCATTGAATGCGCTGCGCATCT
TTCCGATATAAAATGTGGTCCGGTGTATGTAGGTCGACGGAAAAATTGAC
TGAACCATCAATCGTATTACCCCGGGTGAGTATCTCACATGCCCACATGT
TACTCGTGACCGAATCAAAGAATATCACGCGCACCGGGAAACGTCGGTGT
GATTCGACACGTGTTGTATGTACAAGATATACAGGGGCATCGACTTGTTT
TCTGGCAGGATATCTGCAGAATCTGCACCTACGGAGTTCGGGTTGGCTGG
ATTCGAACCCACCACCTATTGCCAGATATCTTACGAGGAGGTCATCATCT
GTGAGTCGCGCAGCCACGCTGGCATGTAAATCATTCGAGCAGTAAAAACA
GCCTAAGGTTCGATTGTTGTAATACGCGGGAGCCTAGATCTCTACCCCCG
CGGCCCTTGCGTTTCATCACCTGCGAGACATTCAGGTCAAGAACGGAGGT
GTCCTTTCGGTGGCCGAGGGGGCGACCGCTACCTTCATGGGCATGTCGGA
GTTCAGCGACAACTCTGTTGCGGTGAAGCAGATCGGCCCGATATCCTGCG
GAGACGGGTGCACGACAATTGGAGCTGGTCTGAGCTACATCGTCAAGAAG
GGCGGTGCAATCCACAACAAGGCGAGCCCACACTAGCTATCGCCTTTGGT
CATGTCCTACCTGCGGCCGGTTGCAATCGAAAGACATTTCACGTTACACT
CCTCCCCGCTACACTACTTGGTTTACATGCCCGTTCGCACCATTCAGACT
GGAAATTACGACCACTCTACAGCGGGCCGTCAATATGTTTTTAACGGACC
TTGCCGAATCCAGTAGTAAATACTATGCCTACTTGCATGGACGATCCAGG
ACAATAACCCATCGTACTTCCTGAAATATCGCTTGAACGGAATCGATTCA
GCGACAAGCCAGGCGCGCTAGTGCTCCATTTGCAATGAACCAAGAGCAAG
CATTTACGAGAGAAAACATTGAAATTCTGGGTGAAAATGGTATTTCAGAT
AGAGCAGTGGCCGAAATCGGGTACACCCGGTCCAACCACGCCCAATACCG
GGTACCCGTACAAGACGCTGCTGGGAGCGACCGCATGACACCATCTGGTT
GGCCGACGACCACCCCTACCCGACCTTGACCGTCAACCCACCGGGTGCAC
CCGACTTGGCTACTGACCCGGGAGGTACCCGATCTTCTTTCCTCAACCCG
AAAATGGCTGGGCTGTTAGGTCAAAACCCATGCACACCATCACGGGTAGG
ATGCACACCGCTGGCCGCTCGTTTGTCGCCAATGACAAAGCAGCGGGAGC
AGAGGAAACGTCTATTTTTTAGATGCGTCTCGTGCCTGTCGCATCTAGCG
AGCGAGGCATTCATCCAGCTCTTGTCGATCATTTGCACCGACCACCTGCC
GCTTCCCCCAAGAGAGAGTTCCATCGCCGGCGGTGGGTTCGCCTCCGCCC
GCGGTCGGAACGTCCAAATTTCAGGGCAGGGCGAGGCTGATGTGAGCTTG
TGTGCATGGATTTTGGCCGAACAGCCCAGCCATTTTCGGGTACATAAGGG
AAAGAAGAGCTGGGTACCCCTCCGGGGGGTGAGTAGCCAAGTCGGGTGCA
CCAGATGAAAACACGGCCAAGGTCGGGTAGGTGCGAGCGTCGGCCAATCA
GATGGTGTCATTCGGTCGCTCCCAGCAGCATCTTGTACGGGTACCCGACT
ATGGCCGTGGTTGGACCGGGTGTACCCGAGTTCGGCCACTGCTCTAGATA
AAACGGCGAATACCGGGTGGAGTTTTGTTACAATGATATCCTGTATCGGA
AATAGCGGAAATCTAGAGACTGTCGAGAGGAATCGTTTGAGCCATCTCTT
CTGAAATCGTAAGGTTGGTTACTCTCAACAAAACGAGAAAAAATGATTTG
CCATTGAGTTGTTTCTTCTTTCATACTGTGACTTCATCTGTCAAAACCCC
CGTGCCCCGCTGTTTCTGCGAAAATCACACACACACACACACACACACAC
ACAGCAAAAGGCCAACAAGAGCTCAGTTTTCTTTCAATATACCGACAAAG
GGAAGACAAGAACATATTTTCGGCGATGCAGCCGGAAACAGGGCCGCAAA
CGCTGTCTTCGCCTTTTGGAACGACACGCCCTACCTCCAGAATCGCGTAC
CTACATACAGGAGACGTTCTTGAAAGTTGTCCTCGACAGACATTGGTCTA
AAGACGATATTCGACCCAAAGCACAGCACTGACGGTTTATCGCACCGAAT
TTCTCAATATCGACATATCGCCCAAGTTTCCTATCAATGTACGCGGGGTC
CTGCATGTTGTTGCGGGTGTACCCCTTAGAAATGTCTTTGCCAAACTTTT
ATCTGCCTTTCCCGTAGCGTATCCCTCCGAAATCTCTCCCCCAAGCGTAA
CCAATGCAGTGACTTTTGGGATCCATCCCCGCTCGCTCGGTAATCTGGCG
AATGACCCTACAGTAGTAGCTCCACACCTCAACCACTCTACATGAGGGCT
CATTTTGCGCATAGACAATCTATCGACCGGAAATCCCCCATCACCATGAC
GGCACCTACAGCGGTATCCAGCGGAGAAAACGGGCCAAGGGGCCACATCG
CGTGTTTGTGAGTGTTTGGGGACAATCAAGACAGAAGCGACAACCAGAAA
TTCAGCCTTGAGAGCGCTGCTAGACAGGAATCGTCATACGAGTTACGAAT
GAAGCGGAGAGAGGACCCACACACTCCATTGAACTCGATAACGTTTTCAC
ACACGCTCCGAGCCGAGAAAACACATCAGTCGGACCCCCGGAACTCCGTG
TTCGGCCCAACCGTGCGCACCCGCCCCTATGTACCTTCGATGTCGCAGGG
GATGCTCACGTGAGGGAGACGCCACTTTCGAAAGACACGGAGGACTCCAC
CGAGATGGGGAAGGCCGGAGCAATCTCCAACACCGGCTCGGGTACCATTT
TGTTCAACGCCAAGCTGACCATGAACGACAATGAAGCCGAGGTGAGTTGA
GGAGGCGGGATGTACTGTAGGGCCTGTGCTTCATATGTGTTCGGCGTGTG
GACGTGATTCAAGGGACTCAAGCCCGTGGGGAGTATCAGCCGCATCATTG
ACGGGCACTTGAGATAAACTGCTTCCTCCCCCAGCCCTGCGTGAACAGAA
TAAGACGGAAAGTCAGGGGGGTTGTGATACCGCTGTACTTTACGTGCCTG
GTTTCAGCGCTGCTGGCGCTGCGGAAGATTACTTCCGATGCCAAATCGTT
CAATCAGCTAGCCCAAATCGTTTTTTAATCAGCTAGACGGGGAATAAATG
TTGTCTAGAAGCAACTAGAGCGATGTACTGTATTGCGTGAACCTTGCACG
AGCGTATGTTTGTATCGTATTTTGTGATCTCGAAGAACACATCTGTCTAC
ACGAATCTATTCACTGCAATGCCTAACGGGTTTCTCGGAACCCTAGTCAC
AGAACCATGTGCGTGCGTGTTCCTCTTGAGTGTAACGCCATTCCACCTAT
CGGAGATCGCTCCCCACCCACGATGTCACACGCCACCGCCACGCCTTGAA
ACGATAGGGATTCTTCGAAGGGCTTGGTGGGGGAATATACAACCGCGGAG
ACATCGTCGTGGAAGGCGAGAGCTACTTCTCCCGCAACATCGCCGCCGTA
AGTTATTCCCATTGGCTGGTGTTGTTGTTGGTGGTGGTGTTGTTTATTCA
ACCGCTGTTATTGAGTATGGATGTGCCCTCCTGATTCACTTCCCTAATGA
CCCCACTAAACCAGTCCTTTCCCTCAGCACACTTATTCCTCACTTACAAA
GCACGTCAAACTCATTGGGGAGTCCAAGGGAACACGGTATCCCGATGAAT
GCATCTTTTCATCTGCTGCACCTTTCGTCGCGCGCAGGACGGAGGGGGAA
TCTACTAGACGTCGATTGGGACGATGGCGTTCAACGGCATGGCCACGTTC
TCCGGCAATAGCGCGTACGAGGTGATGCGTTGATTGGTGCGCTGTTGGAT
GAGAAGAACTCGGAGTATTCCTCTGGCGTAGACTTCCAAGAGGGACGCTC
ATTGATTGCAGCTCGCAGAATTTACCCTAGTGTTTCAAATGCTCATGGGT
GAGGTTTGATTTCGAACGACACTGACAATCGTGGACGGCTCACGCACATC
GTTTCACCTTTGCTAGTCAGGTAGAGACAACGCACTGACAATCTCTATAT
CGTCGCCTCCGAAATTAACGGAGTACACAAAGCTCGGAACCTTCGCTCGC
CGATCATGACCGGAAGTCGAGGTGGTCCTACAGTATGCCCACCCTATGTA
TTCACCCGCTCATCGTTTCCTCTCCCTGATCGAAATGTCACATTCTATGG
CGTACTCTGCCGCTTGTGACCTCATGTCACTGTATGCGACATCAACAGCT
GCGTGGGGGCGGACTGATGAACAACGGTGGTCTCGTGAACTTCAACGCCA
GCAGCCTCTTCAAAGGGAACGTGGCCAGCGGATCTGGCGACGGCGGTCTT
GGTGGTGCTATTTACAACGGAGGCGGAGGGACTGTCACGTGGGTGGTGCC
GACGATGTTACCCTATAATATCATGTTTCGCGGGCCCGCTCGAATTCTTA
GCCATAACATACTGTAGGTATCCGACGTTGTCGTAAGCCACCGCGAAGTG
TCAAGTTCCTGGAGAACGCACTCCCAGCAGATCGTCCCGTCACACCCAGC
CATCGATGTGGCGATGCCGGACTCACACTATAACGCTTCAGATCCACGCT
CGGTTGCACTGCATCATTTTGCTTATCCGGAAATAACTTCCTGTGCATCA
TCGTTACAAACCTGTGGCGGGATGATGGTGGATCGCGGTTGCATACATAG
AAGCGTCTTCGCTCAATCCCACCATCTACATGCGGTCGGCATCGCCAGTT
TTCCCGTTATCTGGTGTCTTGAAAGTTATCAGCCATGGATGAGAGAATCG
CGCGTCAATCTCAAAGGCCACGGCGATTCAACCGGGAGTCGGTTTAGGCG
TGTTTTCACCTGACCCTATCCTGACTCGCGAAGCTTTGACCCATGCCGAC
CGTGGAAAGCCCATATTTTCCGTTCACCGGTGGTGGCGGCGTTTAGCGCA
TCATCCCGATCCAAGCTCCCCGAAGGTGTCAATAGGACTCGAAACAGTTG
CTGGTGGTTATCCTGCATTTCCATCGTATACATGCTCAAACTGTTCCATG
ACACCGTATTGCGATGACCCTCTGTAGGCTCAGTTGCAGTAAGAGGAAGT
TTTTTCGCTTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTGTCTCTGTCT
CTCCCCCTCCCTTCGGCTGTCCCTCTGATCCAGTCTATCCCGTTCCCACT
TTATGAGTCTTTTCCCATGCTGTGCTGGGCCCTCTCGTTGCCTATTATGT
GGTGATATCTCTGCGGTATGTGGGTTTTCCAAGGCTGATGGGCTCGACTA
ATTTCACTGACAACTCGGCCTACTGGGGTGGAGCAATTTACACCGACGAT
GGCGATGTGGAGGACGACGAACCCGCCTCAGTCACCACGTTCCCCGATGA
TACCGTGTTCGAAGGCAACATCGCCGAGGTGAGCGCCTTGATGTTTCGAA
CCGCGCCGTTGACCCCGCAATCCGAACCCCACCAGGAACAGAGGAGCGGT
TATTTCGGTATCGCTACGTGGGTAACCAGAAGGGATAGGTTGTGGCACGT
TGTACACCAACTCGAACCGGGACCTGATTGGCCTGAAAATCATTTGTATC
TACAGCCCGCCCTTTTTTGTAAAATCAATGCTATCAACTCTGGTGGCGAA
CACAGTTGCTCACGGGTCCGTGAAACGATGAGGTCGATGGTCGTGCTTGC
ACCAGGGTGGTTCATCTGACCACTACGTGCACAGTACTCTGGGATCCGAC
ATTCAACACGCTGTGGACACACGCACGCCGAAGCAATGCTCATGCATCCA
TGAAATGAGCCAGCCACGAAAGACAATGATGTGGACTTGTGCTACCGACG
ACTCCATACTCCCCGACTCTTTTCTGGATATGCGCGGGTTGTTCATTTCT
GGGTAGTCTATGCAACGCACTCATTGATAGTTTGTAGAGTTAGGAAACCT
CCCCTGCGGGCTCTTTGGGTCTAGCTAGAGGCAAGAACCCGTCTTTGCTA
ACAATGGTCTGAGTTGACGTTTTTTTGCTCTATATCTCTGGAAGACGACT
ACTTTCTCCTGCTCGATACCAGCTAACCGCTATGGTCGGGGGTGATTCAC
ATCGGAATGACCCGCTCATTTGTCGCCGAAGTACTGGACGAAGTTCATAC
CCTCGACACTGAGGAGGAAGTGGATGGAAGGTGACCGATTACCTAATCCA
ACGAGCGCATATGAACATCGCTCACGGTTCCAATATCTTGAACCTTGGTC
AGAGTTTCATCGATATGTTACGGCCACCCCTCGACGCGACAGACAGACCG
CAGAAGCACATCTACGACGTACGTACGACACGATGGTGTGCTTGGAATTG
ATTGACGAACGGATGCTTGCCCTCTGGGCATGGTCTAGGCAATACGTGTC
ATGTTACGCCTTGTCGAGCACATTTCTACCCTGGCGGTGCAACGTTTTCC
GCTGGTGCTTGCACGATCATGCGCTTCCCGGTACACGGCCGTCGTGCAGC
CATGTTTCTCGGTACACATGTTCAACGAACGTTCCCAATGGCAATCATGT
TTTTGTGAAGCAATCTCGTGTTCAGTCTCCCCCCTCCCTCTTGTTTGGCA
CCTTCTTCAAACCAGTACTGCCCGGACGTCAACAACGGCGACAACGTAAA
CTGCCCTGTAGTGTAAAGCGTCATCCAGCACGTGATTGGCGAACATCTGC
ATGAGGGGCAAGTTAGGCTGTGTCCTCGATGAAGTGGGAGTTGCTGGAGA
AATCGGCGGGCGTCGTGGCGTCCTCATGATACCGTTAATATTATTTTCGA
CGCCGGTGTCGTAAACAGCATTACCAAAAAATATAATAATGACTAGACTT
GTTATTGCACCATGTTTCTTTGCCGCAGTACTAGCAGAGCGGAGTGCGTT
TATTATGAGGCGCTGTTCAAGTTAGATTTGTTTCGCTTTGATGTTCGTTG
CGTTTTCTTCTTTCTGCTTTGCGTCGAGAATCAGGGGGAAGAAACGTGTT
TACACGGTTCTAGACCCCGCACCAGCGAATGTTTGCTTACGAGTGCAGGG
CATGTTTCAGCTGGGGGGCTGTTGCGTATTGATACTGCGGTGGTATTGAT
ATTTTGTCTTGATGCAAAACCTGTGAGAGGAGGGAGGTACAGATTTGTAT
GTTTCGGGGGACGTTCCAGCAGGGGAGCTGTTTGCATGACTGTTCATGGT
TCTATCGTTTCGGACAGCAGCGGTGGCACCCCACCTGTTCGCATGTGCGC
ACTGTTTAGGATTTGGTCCTTGGACACTATATTGGAGGAAGCGTTTGACG
TGTTTTGGCGAATAATGGTTGGAGCGTTCGGGCTTTCCGAATGCTCGTAT
TGATTGGTCAAGAAGTTGAAAGTTCGTTTTTTTCGAGGATGTTGTGCCAA
CTCTGTGAAGCTGTTTGTTCTAGGTTTGTCCGTCGCCGTTCCGACGCTTT
TCTGGTATAGCGCAGATGCTTTTCCGGCACTCTTCCGAGGACGATTCTTT
TATCTTGTAATTTTTGTTTAGTATTGGTTGGATGATTTCACGAAGGACTT
CAAGATCGTAACTTGTATCAAGCAGGGGGGCTGTTTGGGGTACTTAGATA
TAAGTTCCGATCTGGCGAGTGTGTGGGGGCCAAGTGCGGGGGCCCTCGAG
AGAGAGCCAGCGCATGTGTTCAGTCTTGGTATGCGTGCTGTGTGCTGGAA
GGAGCATGGCGATGCG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig135:10949..19314+

>mRNA_E-siliculosus-1a_F_contig135.2084.1 ID=mRNA_E-siliculosus-1a_F_contig135.2084.1|Name=mRNA_E-siliculosus-1a_F_contig135.2084.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=990bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:10949..19314+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGCCTGCCTCTCTCGCGGTCATCGCCAGTCTTCTGGCAGCGCTAGC
TACGGCGGTCGAGTACACCGTCATGACTTGTGCTGACCTTGCGGACGTCG
ACGATACCCAGGTCACAGGCCGTACCATCGACGCCAGCACCTTCGCCTGC
GATGAGTACACCCGCTTCCGTGTCCGCAACTCCATGGCCCTCAAGGCGAC
AGTTCCCGCAGTGGAGTTCGGGAACTTCTCGCTGAAGGTCCTCGGAGAGC
TGACGGTCGAGCCCGACGTCACGTTCAACGGCGTCGTTGACCAGATGAAG
CCTGCCTCTCTCGCGGTCATCGCCAGTCTTCTGGCAGCGCTAGCTACGGC
GGTCGAGTACACCGTCATGACTTGTGCTGACCTTGCGGACGTCGACGATA
CCCAGGTCACAGGCCGTACCATCGACGCCAGCACCTTCGCCTGCGATGAG
TACACCCGCTTCCGTGTCCGCAACTCCATGGCCCTCAAGGCGACAGTTCC
CGCAGTGGAGTTCGGGAACTTCTCGCTGAAGGTCCTCGGAGAGCTGACGG
TCGAGCCCGACGTCACGTTCAACGGCGTCGTTGACCAGGTCAAGAACGGA
GGTGTCCTTTCGGTGGCCGAGGGGGCGACCGCTACCTTCATGGGCATGTC
GGAGTTCAGCGACAACTCTGTTGCGGTGAAGCAGATCGGCCCGATATCCT
GCGGAGACGGGTGCACGACAATTGGAGCTGGTCTGAGCTACATCGTCAAG
AAGGGCGGTGCAATCCACAACAAGGCGAGCCCACACTAGGTCAAGAACGG
AGGTGTCCTTTCGGTGGCCGAGGGGGCGACCGCTACCTTCATGGGCATGT
CGGAGTTCAGCGACAACTCTGTTGCGGTGAAGCAGATCGGCCCGATATCC
TGCGGAGACGGGTGCACGACAATTGGAGCTGGTCTGAGCTACATCGTCAA
GAAGGGCGGTGCAATCCACAACAAGGCGAGCCCACACTAG
back to top