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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig135.2083.1 vs. uniprot
Match: A0A6H5KM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM92_9PHAE) HSP 1 Score: 197 bits (502), Expect = 9.610e-56 Identity = 141/417 (33.81%), Postives = 210/417 (50.36%), Query Frame = 1
Query: 1 MCTENTCSTFVWRGPGYPEHDAGGSCSCVCDDGTWSNRNILGRASCVPVVVHTVFGGAGLAFSVVVLCHAIYHLHRQQIKYHSQRTSASTSPVERCRRQLHTTTITASTLNICYFSLVL---GNIRWLSVVVLMMNG-IPNCIGGVIFTSRMWMYTLSNTHDEMEAAACRG------------WGGNDPRLMRESPEIFALSTWLERPRGHIAAGCTMSIGPSIATIFALANNTELAARFVALGGVFVSNLILVVFWVC--GRSLMRAIDSSLQLQTASSQSVWKAEGQHCGA-GHRTLVEAKKKVRRMVM---VTASLLFPAMTMGSLGAFTPYGVRAPLLMYGVPFALVPQIWLSMNVQLHSKRSHLLPGPNRNILSAWTS-----GHLATAALSRMPRSFARRQQQHVVPTQGP 1170
MC ++ C T +W G G A G C C C D TWS NILG SCVP H VFG G+ ++ L HA Y L+RQ +KYH Q +ASTS VE+CRR LH I + + +CYF +VL W+S + + G I IGG++ T RMW+Y L++ R NDPRL+RE+PE+ +S LERP G + M +GP++AT+ A A + + A A+ F+ ++ F + +L++ ++ L+ S+ K+ G G L++A +K + + V SLL ++ M +G FT YG APL+ G+P+ P +W N+QLH+ RS P+ ++S +S +AT +SR + ++ VVPT P
Sbjct: 1 MCGQD-CQTSLWGGTGISTVGADGGCRCACGDETWSEYNILGLPSCVPSKAHAVFGAVGVFVTMTSLGHAAYQLYRQ-VKYHRQFMAASTSSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMFGIGQIMMTIGGIL-TVRMWLYCLTSDEQRSPLQLNRFPYVSPLRNHILFLASNDPRLIRETPELLMISEALERPTGLFVSNTVMCVGPAVATVLAAAKSLQAACMVSAVA--FLGLIVFCDFIILKTATALLQTVNKYLRNSVVRSE---KSNSIMAGTVGSLQLLKAARKNIKFALYFCVVVSLLTFSIVM--IGLFTTYGATAPLIFSGIPYGCSPPVWFVFNIQLHAGRSRNRTEPD--VVSRASSVIRQVPSVATRIVSRA-KGVVFGNERSVVPTLTP 404
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1185 |
| Model size | 1185 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig135.2083.1 >prot_E-siliculosus-1a_F_contig135.2083.1 ID=prot_E-siliculosus-1a_F_contig135.2083.1|Name=mRNA_E-siliculosus-1a_F_contig135.2083.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=395bp
MCTENTCSTFVWRGPGYPEHDAGGSCSCVCDDGTWSNRNILGRASCVPVV
VHTVFGGAGLAFSVVVLCHAIYHLHRQQIKYHSQRTSASTSPVERCRRQL
HTTTITASTLNICYFSLVLGNIRWLSVVVLMMNGIPNCIGGVIFTSRMWM
YTLSNTHDEMEAAACRGWGGNDPRLMRESPEIFALSTWLERPRGHIAAGC
TMSIGPSIATIFALANNTELAARFVALGGVFVSNLILVVFWVCGRSLMRA
IDSSLQLQTASSQSVWKAEGQHCGAGHRTLVEAKKKVRRMVMVTASLLFP
AMTMGSLGAFTPYGVRAPLLMYGVPFALVPQIWLSMNVQLHSKRSHLLPG
PNRNILSAWTSGHLATAALSRMPRSFARRQQQHVVPTQGPLSLP* back to topmRNA from alignment at E-siliculosus-1a_F_contig135:4814..9853- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig135.2083.1 ID=mRNA_E-siliculosus-1a_F_contig135.2083.1|Name=mRNA_E-siliculosus-1a_F_contig135.2083.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5040bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:4814..9853- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGTACCGAGAACACCTGTAGCACTTTTGTTTGGAGAGGCCCAGGGTA
CCCGGAGCATGACGCTGGCGGATCATGCTCGTGCGTGTGCGACGACGGCA
CCTGGTCCAACCGCAACATCCTCGGGCGCGCATCGTGTGTGCCGGTGGTG
GTGCACACTGTTTTTGGTGGGGCGGGGCTGGCTTTTTCGGTGGTTGTCCT
TTGCCATGCGATCTACCACCTACATAGACAGGTAAGTAGTACATGCACAG
TAGCAGTACAGTAGGTGAAAGGCGCTCGCTGAACGATTAGTCTAGCAGTA
CGACTGTCAGTCGTCCCACGAGAGGGGGTTGTTGAAGGTGGTCGTTGTTG
TTGCTCCACCGTTCCGTCGGTTCTCCGCTCAGCACCTTCCACCACTTTGA
TCTCCGCGAAGGGCACACCCCGATAGCATTGATGAGGCCACCGTGTAGGT
CCCTACTCATGCTTGAGGGCACAACGGTGCATTACGCTGATATATGTAGT
TGTTCCCCTACAATCAGGATCAACCCCTTCTTGCTTGTGAACCATGCAAA
GCAATCTTGGTGTTCCATGGGAGATCACTACAGGACATGATGGAGCGGGG
ACACCTCCCCTGCCCTACAGTAGACTGGTATACATGTGCGATGCGTCCAA
GGCAGCTAAGGTGTAGGCTGTGTAGACCAGCAGTTCAAGGGGTGAGGTCT
GGTGTCGGCACGTATGACATGTTATGCATGCAGCATGGAGCGTGAATGGT
GCGGACCCAGATTTACAATGGGATTTTTCAACCGCAGCTTCAGCCTTCCG
ACAGCACGCCCCTAGCAACAAACCCGGGCGTGCCAACGCGCATGTCCATG
CACATCATGTCTTGGAACTGATTCCAATAACACAACACCGTTTTTCGCAC
AGGGCTTGTTTAAGCACCCGCCGTCTCGCCCGTTTCGTCTTGATTTAGAA
TTGTTATTGTTGTTGCTGCTGTTGTTGTTGTTCTTGATGTCTTCGCATTA
AGAACCGTTCCATTCTCTCTCCCCAGTACCTTATTCTGTCCGCTACAGTC
TAACTCTTGACGGGTCGATTCCCGTGGTCACAGGCTAACTTACCCAAAAC
AGGAAGTATACCAAAATGAAATGGACCCGAAGGATTCAAAAGCCAATAAC
AGTCAACGGCAGATGGTCTAGGCCACTCCGCTCGCCTCTGCACGCTATGC
GAGGTAACCCTAGATTGGAACAAGAGAGATGGAAAAAAAAAAAGATAAAG
AAAACGAAACAGAAACAGAAGAGAGAAGATGGAGAGAAGGGAAAAGAGAA
AGGGGAACGACTCAGACAGAGAAAGACACACGCTGTATGTACAGACGACA
AACAAAGAGAACAACACAAGACAGCACAACACCATCGGGCCACCCGAACC
AGCAAATGCACGTCATCGCTCGCGGGGGGTTGGTGCAATGGTGCAGTGCC
GGGGGGGGGGGGGGGATAAGTCAAGCAAGGGGTCCAATTCCGCACAGAGT
TTCGCGCCACTCGGTCCGCCGCGTTTCCTGTCTTTCCTCGCCGTCTCGTC
CGCCTGCTGTATCCCTCCCGCCCCCGTGGTTGTTGCCTTGTCAATGTTGT
TGCCGGGCTTCTTGTTTCGTTTGAGCGCTCGTTGTCGGCTAACCTCCTCT
TCCTTTTTGTGCCAGGAGGCCATGAACCTCTTAGCTCCCTGCAGTACCCC
TGCATGCCACGGTACCCCCCGGTCCACCTTCGCTGCTTCCATCCAAGTTG
TTTCCGAGACTCCGAAGAAGCATGGCTTGGTGTGCGTAGATCCGGGCTCT
GCTTCGAACATCTTGAGGTCGTCCTTCAGGCACATCTGCCAGTTTTGCTC
CGGTTTCCCCCCGCCTGGGCCCTCCCCCCCCACCAGCTCGCCAAGCATCA
TCCGTTTCGGGAGTCGTCCGTCTGGTTGCCTTGCCAGCGCTCCCGCGAAC
CGCTGGCGCCGATGCCGAATCGTGGTTTCCACGCTCTGGCACCCTACCCT
CTTCAGGGTCTGGACGTAGGAAAGCTGCCGGTAGGTGCTAGTGGAATACG
TTTTCCTATACTTGTAGTTAATCCGAGACAAGGAGACTGCGTGATATACT
CTGGCATAGGCACGTCCACAGACCGCAGCTCTGTGCTACAACGCGACGAG
TTTATCCTGCGGAAACATTTCCCAACTAGTCTCATGCGTAGCGTGTGTGA
TCGCTGGGTGCTATGTTTTTTCTGTGGTCGTCGAATTCGGTCAACATCAA
GCAGGAGGTGGTGATGTGTCCTTATGTGGCTCTGGTTGATTGAGAAGCAG
ACAAGACACCACCAGTACAACAGCGGCATCTAAACTTGCAAGGGTTTACT
CGTTGGTTTTTCCACGATGAAAGTGCCACCGTGGTGGACGGTGGTATCCG
AATACCGCCCGTTTTCGGCCGTTTTCTTTGATTATCACCTCCGCCATAAT
CGTTTCCATAATCGTTTCCTCCGACAGACACAAATACCGTCCACCACCCA
AAACTACCCCCGTAGACTAAAAGCGTTACCGCAATATTTTCTGTTTCACC
GAGGCCGCTTAAGTCGTTACCGCCAAACCTATAAGCACCATATGGCGATA
CCGCCGAAACCGTTACCGCCATACTCGTACGTAACCGCCGATGGGAAAGT
AACCAATGGGTTGAGTGGGCAAAGGACTCGTCTCGTCGACTGCACGAGCA
AAATAAATCAAGGAGTCGAGTCCATGCGCTTTGTTCGTTTCTACTTCTCA
TTTGGCGTCTAAAAGTTAAATATAATCATGCGAATGCCAATACAAAGTTT
CGAAGTACGTGTACAGGGGTGCTCTTCGGCGAAGAAGTTTGCGTTCGTAT
GGGCGCCGAAATGTGGTACCACAATTGCGGGCTTGCTTGGTTTGGTGTCG
CTTGGATTCGCGTAAAACATGAAAGGCGCTAAATGCCGCCGTGAAATTAC
TGCCCTGGTGGGCGGTACCGGAATATCGCCGGTTTTCCGCTGGTTGGTGG
CTTTACCACCTCCGCCAAAGTTGTTCCCGACGAAAAACGCAAATACCGCC
TACCGCAAAACGTCACCGCCTTATGGCGCTACCGCAGAAACACCGCCGTC
GTTGTATTTATTGTTACCTACTCCGCGAGAGTCTATACCGCCCGAAAACG
CAATACCGCCTACCATCGAAGCCATTGCCGCCACACGGCTTTGCCGCATA
AAAGCTATCGCCATTCTTAGGTGAAATCGCCTCCGCCCAAGTCGTTTCCG
ACCACTAACGGAATACCGCTTACCGCCTGAAATTTCCACCCTGTTGCACT
TCCACCCGATGATGCGTTCGCCTTTTCGAACAAGGCGCCGATTCCGTCCT
GGAACATTTGGGCTACGGCCATAGCAAAGACGCGCGCCACCAGAAAAACA
TCCTCATTCATTATCGCACGAAATACTAATATCTAACCACGCACCGTCAT
TCATGATACGGTTCCTCACCATCGAATTCCTCTGTACGTACACACCGTAC
ATACCTCCCCCGCGGTTGTTGCTCTCTTGCCCCCTTTCTGTCTCTCACAT
TGCGACGCTATTCGAGCAGATCAAGTATCATTCCCAACGTACATCAGCTT
CGACCTCGCCGGTTGAGCGGTGCCGCCGGCAACTCCATACTACGACGATC
ACTGCGTCCACCCTCAACATCTGCTACTTCTCCCTGGTGCTTGGAAACAT
CCGGTGGTTATCTGTCGTGGTGCTGATGATGAATGGGATCCCCAACTGTA
TCGGAGGCGTCATCTTCACAAGCCGAATGTGGATGTATACGTTGAGTAAC
ACACATGATGAAATGGAGGCTGCAGCCTGTCGTGGATGGGGGGGGTTGCG
CCAGGGATAGCAAGTCGTGAAACGCCACGATTAAGGTGCTTTACGAGAGT
ATGTAACCCTTCCAGACCATTGGCTAGACATGTAGCTTTGTCAGTCCAGC
GACTGGACAGGACACTGAAAAATAACCCTCTCACTGCGCTTTCAACCACA
CCGATACCCTCAACAACACATTTCCCTTCATCGGCACCGTGCACCCGTCC
CGTTTGTCTCTAGGAATGATCCTCGACTCATGAGGGAAAGCCCGGAGATA
TTCGCACTATCCACCTGGCTTGAGCGTCCACGAGGGCACATTGCGGCAGG
ATGCACGATGTCGATCGGTCCGAGTATCGCGACGATTTTCGCGTTGGCAA
ACAACACGGAATTGGCCGCGCGGTTCGTTGCACTTGGAGGTTGGTCAAGA
AGGAAGCGAATCATTTGCCGTTGACAGTCCCAAAGCGAGCCTATCATGCG
TGGAGTTCGACGGAAAAGTGTTGCTTTGATTGGGTCCTTGTGTGTGAAAC
AGAGCTAACTGCCACAACAACACGTCATATCTCAGTGCGTCCTTGTTGGC
TCGGGTCCACTTCGCAAAGGGTGTGGAGACCCTTTGGATGTAACACCGGT
GTGGGCTACAATACCTTGCCCGTGTTATTACTCCCCCTTCCCTGACGAAG
AAACCCACTGTCCTCTTTCCCGCATCTGGATGAATCGCAGGCGTTTTCGT
GAGCAATCTAATCCTAGTCGTCTTCTGGGTGTGCGGGAGGTCGCTGATGC
GTGCCATCGACAGTTCTCTGCAGTTGCAGACGGCATCATCCCAATCGGTG
TGGAAAGCAGAAGGTCAGCATTGTGGCGCGGGACACCGGACCCTGGTGGA
AGCGAAGAAGAAGGTCAGGCGTATGGTGATGGTGACTGCAAGCCTGCTTT
TTCCGGCTATGACAATGGGATCGCTTGGCGCTTTCACCCCTTACGGGGTC
AGGGCGCCGCTCCTCATGTATGGAGTACCCTTCGCCCTCGTGCCGCAAAT
CTGGTTAAGCATGAATGTTCAGCTGCACTCCAAGAGAAGTCATCTGCTTC
CAGGCCCCAACCGAAACATATTGTCAGCCTGGACTAGCGGCCATTTGGCC
ACGGCAGCGTTGTCTCGCATGCCACGTTCATTCGCCCGCCGTCAGCAGCA
GCATGTAGTTCCTACACAGGGGCCTTTGTCGCTTCCCTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig135:4814..9853- >mRNA_E-siliculosus-1a_F_contig135.2083.1 ID=mRNA_E-siliculosus-1a_F_contig135.2083.1|Name=mRNA_E-siliculosus-1a_F_contig135.2083.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2370bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:4814..9853- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGTACCGAGAACACCTGTAGCACTTTTGTTTGGAGAGGCCCAGGGTA
CCCGGAGCATGACGCTGGCGGATCATGCTCGTGCGTGTGCGACGACGGCA
CCTGGTCCAACCGCAACATCCTCGGGCGCGCATCGTGTGTGCCGGTGGTG
GTGCACACTGTTTTTGGTGGGGCGGGGCTGGCTTTTTCGGTGGTTGTCCT
TTGCCATGCGATCTACCACCTACATAGACAGATGTGTACCGAGAACACCT
GTAGCACTTTTGTTTGGAGAGGCCCAGGGTACCCGGAGCATGACGCTGGC
GGATCATGCTCGTGCGTGTGCGACGACGGCACCTGGTCCAACCGCAACAT
CCTCGGGCGCGCATCGTGTGTGCCGGTGGTGGTGCACACTGTTTTTGGTG
GGGCGGGGCTGGCTTTTTCGGTGGTTGTCCTTTGCCATGCGATCTACCAC
CTACATAGACAGCAGATCAAGTATCATTCCCAACGTACATCAGCTTCGAC
CTCGCCGGTTGAGCGGTGCCGCCGGCAACTCCATACTACGACGATCACTG
CGTCCACCCTCAACATCTGCTACTTCTCCCTGGTGCTTGGAAACATCCGG
TGGTTATCTGTCGTGGTGCTGATGATGAATGGGATCCCCAACTGTATCGG
AGGCGTCATCTTCACAAGCCGAATGTGGATGTATACGTTGAGTAACACAC
ATGATGAAATGGAGGCTGCAGCCTGTCGTGGATGGGGGGGCAGATCAAGT
ATCATTCCCAACGTACATCAGCTTCGACCTCGCCGGTTGAGCGGTGCCGC
CGGCAACTCCATACTACGACGATCACTGCGTCCACCCTCAACATCTGCTA
CTTCTCCCTGGTGCTTGGAAACATCCGGTGGTTATCTGTCGTGGTGCTGA
TGATGAATGGGATCCCCAACTGTATCGGAGGCGTCATCTTCACAAGCCGA
ATGTGGATGTATACGTTGAGTAACACACATGATGAAATGGAGGCTGCAGC
CTGTCGTGGATGGGGGGGGAATGATCCTCGACTCATGAGGGAAAGCCCGG
AGATATTCGCACTATCCACCTGGCTTGAGCGTCCACGAGGGCACATTGCG
GCAGGATGCACGATGTCGATCGGTCCGAGTATCGCGACGATTTTCGCGTT
GGCAAACAACACGGAATTGGCCGCGCGGTTCGTTGCACTTGGAGGAATGA
TCCTCGACTCATGAGGGAAAGCCCGGAGATATTCGCACTATCCACCTGGC
TTGAGCGTCCACGAGGGCACATTGCGGCAGGATGCACGATGTCGATCGGT
CCGAGTATCGCGACGATTTTCGCGTTGGCAAACAACACGGAATTGGCCGC
GCGGTTCGTTGCACTTGGAGGCGTTTTCGTGAGCAATCTAATCCTAGTCG
TCTTCTGGGTGTGCGGGAGGTCGCTGATGCGTGCCATCGACAGTTCTCTG
CAGTTGCAGACGGCATCATCCCAATCGGTGTGGAAAGCAGAAGGTCAGCA
TTGTGGCGCGGGACACCGGACCCTGGTGGAAGCGAAGAAGAAGGTCAGGC
GTATGGTGATGGTGACTGCAAGCCTGCTTTTTCCGGCTATGACAATGGGA
TCGCTTGGCGCTTTCACCCCTTACGGGGTCAGGGCGCCGCTCCTCATGTA
TGGAGTACCCTTCGCCCTCGTGCCGCAAATCTGGTTAAGCATGAATGTTC
AGCTGCACTCCAAGAGAAGTCATCTGCTTCCAGGCCCCAACCGAAACATA
TTGTCAGCCTGGACTAGCGGCCATTTGGCCACGGCAGCGTTGTCTCGCAT
GCCACGTTCATTCGCCCGCCGTCAGCAGCAGCATGTAGTTCCTACACAGG
GGCCTTTGTCGCTTCCCTGAGCGTTTTCGTGAGCAATCTAATCCTAGTCG
TCTTCTGGGTGTGCGGGAGGTCGCTGATGCGTGCCATCGACAGTTCTCTG
CAGTTGCAGACGGCATCATCCCAATCGGTGTGGAAAGCAGAAGGTCAGCA
TTGTGGCGCGGGACACCGGACCCTGGTGGAAGCGAAGAAGAAGGTCAGGC
GTATGGTGATGGTGACTGCAAGCCTGCTTTTTCCGGCTATGACAATGGGA
TCGCTTGGCGCTTTCACCCCTTACGGGGTCAGGGCGCCGCTCCTCATGTA
TGGAGTACCCTTCGCCCTCGTGCCGCAAATCTGGTTAAGCATGAATGTTC
AGCTGCACTCCAAGAGAAGTCATCTGCTTCCAGGCCCCAACCGAAACATA
TTGTCAGCCTGGACTAGCGGCCATTTGGCCACGGCAGCGTTGTCTCGCAT
GCCACGTTCATTCGCCCGCCGTCAGCAGCAGCATGTAGTTCCTACACAGG
GGCCTTTGTCGCTTCCCTGA back to top
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