mRNA_E-siliculosus-1a_F_contig13481.2077.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13481.2077.1
Unique NamemRNA_E-siliculosus-1a_F_contig13481.2077.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13481.2077.1 vs. uniprot
Match: A0A6H5LNR6_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNR6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.210e-42
Identity = 77/80 (96.25%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:   19 QVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGK 258
            +VQFPDRVVLQ+TFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTG+
Sbjct:  298 KVQFPDRVVLQSTFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGE 377
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BLAST of mRNA_E-siliculosus-1a_F_contig13481.2077.1 vs. uniprot
Match: A0A7S2V2I9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2I9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.260e-19
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 FSCGIPQVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTG 255
            F+  + +VQFPDRVV+QA F   E V  ++D+V+ +L  D A RPF LYVSPP+  L A   L+  GLVPAALVY+SW   PP G
Sbjct:  278 FAFTVIRVQFPDRVVIQAHFHPRESVGTVIDLVRQNLSPDHANRPFHLYVSPPKTKLAAEDLLTAQGLVPAALVYLSWESTPPEG 362
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BLAST of mRNA_E-siliculosus-1a_F_contig13481.2077.1 vs. uniprot
Match: D7FT67_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT67_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.580e-16
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:  136 FELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGK 258
            FELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTG+
Sbjct:  222 FELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGE 262
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BLAST of mRNA_E-siliculosus-1a_F_contig13481.2077.1 vs. uniprot
Match: A0A3M6VAR4_9STRA (UBX domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAR4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.660e-16
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 FSCGIPQVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGKM 261
            F   + +VQFPDR V+QA+F   E ++D++D V   L+D   A  F LYV+PP   L A+ +L +  LVPAAL Y+SW EVPP  ++
Sbjct:  457 FQTVLIRVQFPDRAVMQASFHPNETIQDVMDHVTKCLDDQYKASKFYLYVTPPTQRLAASKTLVELNLVPAALTYLSWLEVPPQAEV 543
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BLAST of mRNA_E-siliculosus-1a_F_contig13481.2077.1 vs. uniprot
Match: D7FME0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME0_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 6.200e-16
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:   19 QVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARP 135
            +VQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARP
Sbjct:   57 KVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARP 95
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BLAST of mRNA_E-siliculosus-1a_F_contig13481.2077.1 vs. uniprot
Match: G4YTH0_PHYSP (UBX domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YTH0_PHYSP)

HSP 1 Score: 79.3 bits (194), Expect = 2.660e-15
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 FSCGIPQVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGKM 261
            F   + +VQFPDR V+QA+F   E ++D++D V   L +      F LYV+PP   L  A +L+D  LVPAAL Y+SW E+PP  ++
Sbjct:  438 FQTALIRVQFPDRAVMQASFHPNETIQDVMDHVTECLAEQFKGGKFYLYVTPPTQKLAPAKTLADLNLVPAALTYLSWSEMPPQAEV 524
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BLAST of mRNA_E-siliculosus-1a_F_contig13481.2077.1 vs. uniprot
Match: A0A3F2S2E0_9STRA (UBX domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2E0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.550e-15
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 FSCGIPQVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGKMKTS 270
            F   + +VQFPDR V+QATF   E ++D++D V   L+       F LYV+PP   L    +L++  LVPAAL Y+SW EVPP  +  T+
Sbjct:  324 FQTALIRVQFPDRAVVQATFHPNETIRDVMDHVAECLDSLYKGNKFYLYVTPPTQKLAEGKTLAELNLVPAALTYLSWLEVPPQIETNTA 413
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BLAST of mRNA_E-siliculosus-1a_F_contig13481.2077.1 vs. uniprot
Match: A0A6A4ACN2_9STRA (UBX domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4ACN2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 9.350e-15
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 FSCGIPQVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGKM 261
            F   + +VQFPDR V+QA+F   E ++D++D V   L +      F LYV+PP   L  A++L++  LVPAAL Y+SW E+PP   M
Sbjct:  468 FQTALIRVQFPDRAVMQASFHPNETIQDVMDHVTECLGEQYKGGKFYLYVTPPTQKLVPANTLAELNLVPAALTYLSWLELPPQADM 554
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BLAST of mRNA_E-siliculosus-1a_F_contig13481.2077.1 vs. uniprot
Match: H3GCB5_PHYRM (UBX domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GCB5_PHYRM)

HSP 1 Score: 77.4 bits (189), Expect = 1.270e-14
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 FSCGIPQVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPP 249
            F   + +VQFPDR V+QA+F   E ++D+++ V   L D      F LYV+PP   L A  +L++  L+PAAL Y+SW EVPP
Sbjct:  405 FQTALIRVQFPDRAVMQASFHPNETIQDVMNHVTECLGDQYKGNKFYLYVTPPTQKLAATKTLAELNLIPAALSYLSWLEVPP 487
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BLAST of mRNA_E-siliculosus-1a_F_contig13481.2077.1 vs. uniprot
Match: A0A0P1AS46_PLAHL (Predicted ubiquitin regulatory protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AS46_PLAHL)

HSP 1 Score: 75.1 bits (183), Expect = 8.280e-14
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:    1 FSCGIPQVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVP 246
            F   + +VQF D  VLQA+F  +E +KD+++ V   L +  +A  F LYVSPP   L  + +L++  LVPAAL+Y+SW EVP
Sbjct:  468 FQSALIRVQFSDGAVLQASFQPSETIKDVMEHVTECLAEQYSASKFYLYVSPPTQKLNNSKTLTELNLVPAALIYLSWLEVP 549
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13481.2077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LNR6_9PHAE2.210e-4296.25UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2V2I9_9STRA2.260e-1952.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FT67_ECTSI1.580e-1697.56PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A3M6VAR4_9STRA5.660e-1645.98UBX domain-containing protein n=1 Tax=Peronospora ... [more]
D7FME0_ECTSI6.200e-1697.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G4YTH0_PHYSP2.660e-1543.68UBX domain-containing protein n=1 Tax=Phytophthora... [more]
A0A3F2S2E0_9STRA6.550e-1543.33UBX domain-containing protein n=3 Tax=Phytophthora... [more]
A0A6A4ACN2_9STRA9.350e-1543.68UBX domain-containing protein n=4 Tax=Phytophthora... [more]
H3GCB5_PHYRM1.270e-1444.58UBX domain-containing protein n=1 Tax=Phytophthora... [more]
A0A0P1AS46_PLAHL8.280e-1445.12Predicted ubiquitin regulatory protein n=1 Tax=Pla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13481contigE-siliculosus-1a_F_contig13481:433..1204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size273
Model size273
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001
Best eggNOG OGNA|NA|NA
Best tax levelPeronosporales
COG Functional cat.O
EggNOG OGs3QBTX@4776,KOG2699@1,KOG2699@2759
EggNOG free text desc.TUG ubiquitin-like domain
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009893,GO:0009898,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010827,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019898,GO:0019899,GO:0019941,GO:0022411,GO:0030154,GO:0030163,GO:0030433,GO:0030435,GO:0030659,GO:0031090,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033036,GO:0033500,GO:0033554,GO:0034613,GO:0034762,GO:0034976,GO:0035265,GO:0036503,GO:0040007,GO:0042221,GO:0042592,GO:0042593,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0043933,GO:0043934,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0046324,GO:0046907,GO:0048471,GO:0048518,GO:0048522,GO:0048589,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098552,GO:0098562,GO:1901564,GO:1901565,GO:1901575,GO:1901698
KEGG Pathwayko05202,map05202
KEGG koko:K15627
Preferred nameASPSCR1
Seed eggNOG ortholog67593.Physo155968
Seed ortholog evalue2.6e-13
Seed ortholog score81.3
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927863.568367-CDS-E-siliculosus-1a_F_contig13481:432..5701622927863.568367-CDS-E-siliculosus-1a_F_contig13481:432..570Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13481 433..570 -
1696318713.9437804-CDS-E-siliculosus-1a_F_contig13481:432..5701696318713.9437804-CDS-E-siliculosus-1a_F_contig13481:432..570Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13481 433..570 -
1622927863.5790274-CDS-E-siliculosus-1a_F_contig13481:1069..12041622927863.5790274-CDS-E-siliculosus-1a_F_contig13481:1069..1204Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13481 1070..1204 -
1696318713.9534736-CDS-E-siliculosus-1a_F_contig13481:1069..12041696318713.9534736-CDS-E-siliculosus-1a_F_contig13481:1069..1204Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13481 1070..1204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13481.2077.1prot_E-siliculosus-1a_F_contig13481.2077.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13481 433..1204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13481.2077.1

>prot_E-siliculosus-1a_F_contig13481.2077.1 ID=prot_E-siliculosus-1a_F_contig13481.2077.1|Name=mRNA_E-siliculosus-1a_F_contig13481.2077.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=91bp
FSCGIPQVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARPFELYV
SPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGKMKTS*
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mRNA from alignment at E-siliculosus-1a_F_contig13481:433..1204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13481.2077.1 ID=mRNA_E-siliculosus-1a_F_contig13481.2077.1|Name=mRNA_E-siliculosus-1a_F_contig13481.2077.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=772bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13481:433..1204- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTTCTTGTGGTATTCCACAGGTTCAGTTCCCCGACCGGGTGGTCCTGCA
GGCGACGTTTGCGTCGACCGAGGGCGTAAAGGACCTTCTGGACGTCGTCA
AGAGCAGCCTGGAAGATGACGTAGCGGCAAGGCCGGTGAGCGAGCAAACG
CCGCCTCGAAGACCGGGTTCGACCATTTGCGTTGTGTGGATCGTCTGTTT
GTTTCTGTAGTAGTTGTGCCGGCTTCCGGCGTGTCCTGCTTGCCTGGTGT
CCGCCGTCCCGCCATGTTGACGCCCAGGGTTTTTCTTGAGGAGGCTAGGA
TGAATCCCTGCCGTAGCTGCGACGTGCTCGTATGAGATTATGACGTGCTT
GCAGTAGAAGTATTTAACAGCTAAGGCATGATTGCCCCCTCCCCCCCCCC
CTGATATCGGTAGGATAGATAGACTAGGGACGACATTCTTGAGCCACCTT
TGGCAAAGTAGGAAGGAACGATTGGCCATCGGTGATCGGGCCTGTGGGAA
CAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACCGCTAAGG
CATGCAAAACATTGGAGTACGCCCCCCCCCTCCCCCTCCTATCAAACATC
TCTTTTGTGCTGTGACACAAATATCAACTTGCAGTTCGAGCTGTACGTGA
GCCCTCCCCGTGTCGTCCTGAAGGCGGCCTCCTCCCTGTCCGACGCCGGT
CTCGTCCCGGCCGCTCTGGTCTACGTCTCCTGGAGAGAGGTTCCCCCGAC
AGGTAAGATGAAGACATCATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13481:433..1204-

>mRNA_E-siliculosus-1a_F_contig13481.2077.1 ID=mRNA_E-siliculosus-1a_F_contig13481.2077.1|Name=mRNA_E-siliculosus-1a_F_contig13481.2077.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13481:433..1204- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTTCTTGTGGTATTCCACAGGTTCAGTTCCCCGACCGGGTGGTCCTGCA
GGCGACGTTTGCGTCGACCGAGGGCGTAAAGGACCTTCTGGACGTCGTCA
AGAGCAGCCTGGAAGATGACGTAGCGGCAAGGCCGTTTTCTTGTGGTATT
CCACAGGTTCAGTTCCCCGACCGGGTGGTCCTGCAGGCGACGTTTGCGTC
GACCGAGGGCGTAAAGGACCTTCTGGACGTCGTCAAGAGCAGCCTGGAAG
ATGACGTAGCGGCAAGGCCGTTCGAGCTGTACGTGAGCCCTCCCCGTGTC
GTCCTGAAGGCGGCCTCCTCCCTGTCCGACGCCGGTCTCGTCCCGGCCGC
TCTGGTCTACGTCTCCTGGAGAGAGGTTCCCCCGACAGGTAAGATGAAGA
CATCATGATTCGAGCTGTACGTGAGCCCTCCCCGTGTCGTCCTGAAGGCG
GCCTCCTCCCTGTCCGACGCCGGTCTCGTCCCGGCCGCTCTGGTCTACGT
CTCCTGGAGAGAGGTTCCCCCGACAGGTAAGATGAAGACATCATGA
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