mRNA_E-siliculosus-1a_F_contig13426.2053.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13426.2053.1
Unique NamemRNA_E-siliculosus-1a_F_contig13426.2053.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13426.2053.1 vs. uniprot
Match: D8LSH5_ECTSI (Ornithine aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSH5_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 5.730e-28
Identity = 59/65 (90.77%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGKLAPVSGNPMACRVATAALEVLREEGMAENA 195
            GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYG      GNPMACRVATAALEVLREEGMAENA
Sbjct:  295 GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYG------GNPMACRVATAALEVLREEGMAENA 353
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BLAST of mRNA_E-siliculosus-1a_F_contig13426.2053.1 vs. uniprot
Match: UPI001891D907 (ornithine aminotransferase, mitochondrial-like n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=UPI001891D907)

HSP 1 Score: 99.0 bits (245), Expect = 1.860e-24
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGKLAPVSGNPMACRVATAALEVLREEGMAENA 195
            GKALSGG+YPVSAVL DD++MLT+KPG+HGSTYG      GNP+ACRVA AALEVL EE +AENA
Sbjct:   49 GKALSGGIYPVSAVLCDDDVMLTIKPGEHGSTYG------GNPLACRVAIAALEVLEEENLAENA 107
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BLAST of mRNA_E-siliculosus-1a_F_contig13426.2053.1 vs. uniprot
Match: A0A6G1S7C6_9ACAR (Ornithine aminotransferase, mitochondrial (Fragment) n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1S7C6_9ACAR)

HSP 1 Score: 97.1 bits (240), Expect = 3.490e-24
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGKLAPVSGNPMACRVATAALEVLREEGMAENA 195
            GKALSGGVYPVSAVLADDE+ML VKPGQHGSTYG      GNP+ACRVATAAL VL +E + ENA
Sbjct:    3 GKALSGGVYPVSAVLADDEVMLCVKPGQHGSTYG------GNPVACRVATAALRVLLDEKLTENA 61
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BLAST of mRNA_E-siliculosus-1a_F_contig13426.2053.1 vs. uniprot
Match: UPI0019A267B4 (Ornithine--oxo-acid transaminase n=1 Tax=Ferruginibacter sp. TaxID=1940288 RepID=UPI0019A267B4)

HSP 1 Score: 101 bits (251), Expect = 8.110e-24
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGKLAPVSGNPMACRVATAALEVLREEGMAENA 195
            GKALSGGVYPVSAVLA DEIMLT+KPG+HGSTYG      GNP+AC VATAALEV+R+EG+AENA
Sbjct:  264 GKALSGGVYPVSAVLARDEIMLTIKPGEHGSTYG------GNPLACAVATAALEVVRDEGLAENA 322
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BLAST of mRNA_E-siliculosus-1a_F_contig13426.2053.1 vs. uniprot
Match: A0A7F8Q5L8_LEPWE (ornithine aminotransferase, mitochondrial-like n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A7F8Q5L8_LEPWE)

HSP 1 Score: 97.8 bits (242), Expect = 1.220e-23
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGKLAPVSGNPMACRVATAALEVLREEGMAENA 195
            GKALSGG+YPVSAVL DDE+MLT+KPG+HGSTYG      GNP+ CRVA AALEVL EE +AENA
Sbjct:   51 GKALSGGLYPVSAVLCDDEVMLTIKPGEHGSTYG------GNPLGCRVAIAALEVLEEENLAENA 109
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BLAST of mRNA_E-siliculosus-1a_F_contig13426.2053.1 vs. uniprot
Match: UPI001955A745 (ornithine aminotransferase, mitochondrial n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955A745)

HSP 1 Score: 100 bits (249), Expect = 1.850e-23
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGKLAPVSGNPMACRVATAALEVLREEGMAENA 195
            GKALSGGVYPVSAVL DDE+MLT+KPG+HGSTYG      GNP+ACRVA AALEVL +EG+A+NA
Sbjct:  288 GKALSGGVYPVSAVLCDDEVMLTIKPGEHGSTYG------GNPLACRVAIAALEVLEDEGLADNA 346
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BLAST of mRNA_E-siliculosus-1a_F_contig13426.2053.1 vs. uniprot
Match: UPI001401E037 (ornithine aminotransferase, mitochondrial isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001401E037)

HSP 1 Score: 100 bits (249), Expect = 1.910e-23
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGKLAPVSGNPMACRVATAALEVLREEGMAENA 195
            GKALSGG+YPVSAVL DDE+MLT++PG+HGSTYG      GNP+ACRVA AALEVL EEG+AENA
Sbjct:  292 GKALSGGLYPVSAVLCDDEVMLTIRPGEHGSTYG------GNPLACRVAMAALEVLEEEGLAENA 350
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BLAST of mRNA_E-siliculosus-1a_F_contig13426.2053.1 vs. uniprot
Match: A0A6J2VBF7_CHACN (Ornithine aminotransferase n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VBF7_CHACN)

HSP 1 Score: 100 bits (249), Expect = 1.930e-23
Identity = 51/65 (78.46%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGKLAPVSGNPMACRVATAALEVLREEGMAENA 195
            GKALSGGVYPVSAVL DDEIMLT+KPG+HGSTYG      GNP+ACRVA AALEVL EE +AENA
Sbjct:  294 GKALSGGVYPVSAVLCDDEIMLTIKPGEHGSTYG------GNPLACRVAVAALEVLEEEKLAENA 352
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BLAST of mRNA_E-siliculosus-1a_F_contig13426.2053.1 vs. uniprot
Match: K4HB80_9SAUR (Ornithine aminotransferase (Fragment) n=7 Tax=Sauria TaxID=32561 RepID=K4HB80_9SAUR)

HSP 1 Score: 94.4 bits (233), Expect = 1.950e-23
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGKLAPVSGNPMACRVATAALEVLREEGMAENA 195
            GKALSGG+YPVSAVL DDEI LT+KPG+HGSTYG      GNP+ACRVA +ALEV+ EE ++ENA
Sbjct:    5 GKALSGGLYPVSAVLCDDEIXLTIKPGEHGSTYG------GNPLACRVAMSALEVIEEESLSENA 63
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BLAST of mRNA_E-siliculosus-1a_F_contig13426.2053.1 vs. uniprot
Match: A0A5B9WUE6_9BACT (Ornithine aminotransferase n=1 Tax=Chitinophaga sp. XS-30 TaxID=2604421 RepID=A0A5B9WUE6_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 2.900e-23
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGKLAPVSGNPMACRVATAALEVLREEGMAENA 195
            GKALSGG+ PVSAVLADDE+MLT++PG+HGSTYG      GNP+AC+VA AALEVLR+EGMAENA
Sbjct:  257 GKALSGGMLPVSAVLADDEVMLTIRPGEHGSTYG------GNPLACKVAMAALEVLRDEGMAENA 315
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13426.2053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH5_ECTSI5.730e-2890.77Ornithine aminotransferase n=2 Tax=Ectocarpus TaxI... [more]
UPI001891D9071.860e-2473.85ornithine aminotransferase, mitochondrial-like n=1... [more]
A0A6G1S7C6_9ACAR3.490e-2476.92Ornithine aminotransferase, mitochondrial (Fragmen... [more]
UPI0019A267B48.110e-2478.46Ornithine--oxo-acid transaminase n=1 Tax=Ferrugini... [more]
A0A7F8Q5L8_LEPWE1.220e-2373.85ornithine aminotransferase, mitochondrial-like n=1... [more]
UPI001955A7451.850e-2375.38ornithine aminotransferase, mitochondrial n=1 Tax=... [more]
UPI001401E0371.910e-2375.38ornithine aminotransferase, mitochondrial isoform ... [more]
A0A6J2VBF7_CHACN1.930e-2378.46Ornithine aminotransferase n=1 Tax=Chanos chanos T... [more]
K4HB80_9SAUR1.950e-2370.77Ornithine aminotransferase (Fragment) n=7 Tax=Saur... [more]
A0A5B9WUE6_9BACT2.900e-2375.38Ornithine aminotransferase n=1 Tax=Chitinophaga sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13426contigE-siliculosus-1a_F_contig13426:188..752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size195
Model size195
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko01007
Best eggNOG OGNA|NA|NA
Best tax levelMammalia
COG Functional cat.E
EC2.6.1.13
Ec32 orthologEc-21_003730.1
Ec32 ortholog descriptionornithine aminotransferase
EggNOG OGs38EEM@33154,3BC6G@33208,3CVEK@33213,3J5C8@40674,489RC@7711,48XYA@7742,COG4992@1,KOG1402@2759
EggNOG free text desc.ornithine-oxo-acid transaminase activity
GOsGO:0003008,GO:0003674,GO:0003824,GO:0003992,GO:0004587,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006591,GO:0006807,GO:0007600,GO:0007601,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0022607,GO:0030170,GO:0031974,GO:0031981,GO:0032501,GO:0034214,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0050877,GO:0050953,GO:0051259,GO:0065003,GO:0070013,GO:0070279,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605
KEGG Pathwayko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130
KEGG ReactionR00667
KEGG koko:K00819
KEGG rclassRC00006,RC00062
Preferred nameOAT
Seed eggNOG ortholog9258.ENSOANP00000009205
Seed ortholog evalue3e-19
Seed ortholog score100.5
Taxonomic scopeMammalia
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927859.5146296-CDS-E-siliculosus-1a_F_contig13426:187..2641622927859.5146296-CDS-E-siliculosus-1a_F_contig13426:187..264Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13426 188..264 -
1696318712.0498567-CDS-E-siliculosus-1a_F_contig13426:187..2641696318712.0498567-CDS-E-siliculosus-1a_F_contig13426:187..264Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13426 188..264 -
1622927859.5361087-CDS-E-siliculosus-1a_F_contig13426:634..7521622927859.5361087-CDS-E-siliculosus-1a_F_contig13426:634..752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13426 635..752 -
1696318712.0699415-CDS-E-siliculosus-1a_F_contig13426:634..7521696318712.0699415-CDS-E-siliculosus-1a_F_contig13426:634..752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13426 635..752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13426.2053.1prot_E-siliculosus-1a_F_contig13426.2053.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13426 188..752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13426.2053.1

>prot_E-siliculosus-1a_F_contig13426.2053.1 ID=prot_E-siliculosus-1a_F_contig13426.2053.1|Name=mRNA_E-siliculosus-1a_F_contig13426.2053.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=65bp
GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGKLAPVSGNPMACRVAT
AALEVLREEGMAENA
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mRNA from alignment at E-siliculosus-1a_F_contig13426:188..752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13426.2053.1 ID=mRNA_E-siliculosus-1a_F_contig13426.2053.1|Name=mRNA_E-siliculosus-1a_F_contig13426.2053.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=565bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13426:188..752- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCAAGGCTCTGAGCGGAGGGGTGTACCCGGTGTCGGCGGTCCTTGCGGA
CGACGAGATCATGCTCACCGTCAAGCCCGGCCAGCACGGCTCCACCTACG
GCAAGCTAGCACCAGTTAGTCTATCCCTCAACCCGTAGTCTGCGGGTACT
CTGTACCCTGCTTTGGTCCGTAACAGTACTACAGAGGTATGCATGGACAT
GAGCATGTACTACTGTACCCTACGGTTGGCCGCCGCCCTCAGCTTTTTGG
GTACGGCGAGCGGACTGCTGGTTTTCGGTCGGTGCAGAGGCGAGAAGAAG
CAGCAACTTGGGAGCATTATTCTTCGTGTCACTTACAACATTAACCGTAA
ACCTGTCGTGTGCCATGTGTACGGCGGGGTGTGTGATTTTTTTGTGTCGT
CACCTACGTTCGGACGGCAGCAAACCTACACGTATGTAACTGTACAAGAA
CGGACATGCCATGCCTATAAAACCCTACACATTTCCAGGCGGAAACCCGA
TGGCTTGCCGCGTAGCGACGGCGGCCCTGGAGGTGCTGCGAGAGGAGGGC
ATGGCGGAGAACGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13426:188..752-

>mRNA_E-siliculosus-1a_F_contig13426.2053.1 ID=mRNA_E-siliculosus-1a_F_contig13426.2053.1|Name=mRNA_E-siliculosus-1a_F_contig13426.2053.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13426:188..752- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCAAGGCTCTGAGCGGAGGGGTGTACCCGGTGTCGGCGGTCCTTGCGGA
CGACGAGATCATGCTCACCGTCAAGCCCGGCCAGCACGGCTCCACCTACG
GCAAGCTAGCACCAGTTAGGCAAGGCTCTGAGCGGAGGGGTGTACCCGGT
GTCGGCGGTCCTTGCGGACGACGAGATCATGCTCACCGTCAAGCCCGGCC
AGCACGGCTCCACCTACGGCAAGCTAGCACCAGTTAGCGGAAACCCGATG
GCTTGCCGCGTAGCGACGGCGGCCCTGGAGGTGCTGCGAGAGGAGGGCAT
GGCGGAGAACGCCGCGGAAACCCGATGGCTTGCCGCGTAGCGACGGCGGC
CCTGGAGGTGCTGCGAGAGGAGGGCATGGCGGAGAACGCC
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