mRNA_E-siliculosus-1a_F_contig1332.2012.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1332.2012.1 vs. uniprot
Match: A0A6H5KVW8_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVW8_9PHAE) HSP 1 Score: 1285 bits (3325), Expect = 0.000e+0 Identity = 823/992 (82.96%), Postives = 842/992 (84.88%), Query Frame = 1
Query: 1 MAGNKARQSEAPGEGGDDGSNNDCTNTTYAPVPRMKKRPRGEGGGVXXXXXXXXXXXXXEPKDSLSDEGDQAASSNSSAGACGEGRTCVSCRKSKXXXXXXXXXXXXXXXXXVCIAQVRGRGRPVASMTAGKKSLKLDEDEVGRSSKNGGGADDTSGSARVAKSVGAEAEPGSSHANXXXXXXXXXXXXXXXXGASPSSGVLSSAHSSLAGGXXXXIDGATTGGSGSMGTRKGRPSSSVEVPPLAAVASQIAAGTSPSPLYAAALDGEGSPRGDHGGDGGGGVGEGFLLAPLEHQRHFEAFSRALPPRIMQSGIPTIAPPQQXXXXXXXXQ-GVNGTLHNSSARPLSTHSLQFHGGGVGXXXXXXXXLSDGGSMAAMNASAAQGSISSAGGSWRGAFLGGPGPAAHAVGGLGGTGEVSRNDIDTPNGQWEYMNAPSVATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGKGISSLSSDGGFNGAGKVEASTWVEAMDEHTHAVXXXXXXXXXXXXPTAGERGAXXXXXXXXPDGEIFLSKSEDKQQRWLIAVEQGAEATGRDSGGRSPGANGGSVDPTEAIVSGFWKLFRDHEVHRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQETPQYIQEMSSVFAAVSMRVVLRGQSSFHHNDLCGRLFLTTQEANEMYASDNQDVWATCIHPDDHKTFFDNLSMQLFRTPGHQSEFKKVLKCRDRIGVVFLALVHFRYEFRDDGNFAAFGLSILPLPQSDYIQKVDQPLTASDGHGSSGGSTAASPPVQPQPEGPSSSRPSLPPPPRFVGSGNSGDRGAGGVGAAAAVTTALRGVSSASCSVPSSSGVVTAVAASVAGEGDCGLSRQPLPPLDLEVMQRRPGSLGGHGNGDGDSADVSPGGVGAAMATGGGGF 2973
MA N ARQ+EAP EGGDDGSNND TNT+YAPVPRMKKRPRGEG XXXXXXXXXXXXX SSAGACGEGRTCVSCRKSK XXXXXXXXXXXXXX VCIAQVRGRGRPVAS+TAGKKSLKL ED VGRSSKNGGGADDTS SARVAKS+ AEAEPGSSHAN GASPSSGVLS AH SLAGG IDGAT G SGSM TRK R SSSVEVPPLAAVASQI+AGTSPSPLYAAA+DGEGSPRGDHGGDGG GVGEGFLLA E QRHFEA SRALPPRIMQSG PTIAPPQQ XXXXXXX GV G LHNSSARPLS H XXXXXXXXLSDGGSM AMNASA+ GSISSAGGSWRG F+GGPG AAHAVGGLGG GE+SRNDID PNGQWEYMN VAT XXXXXXXXXXXXXXXX XXXXXXXXXXXX RGKGISSLSSDGGFNGAGK ASTWVEAMDEHTHAVXXXXXXXXXXXXPTAGERGAXXXXXXXXPDG IFLSKSEDKQQRWLIAVE+GAEATGRDSGGRSPGANGGSVDPTEAIVSGFWKLFR+H +HRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQETPQYIQEMSSVFAAVSMRVVLRGQSSFHHND+CGRLFLTT EANEMYA DNQDVWATCIHPDDHK FFDNLSMQLFRTPGHQSEFKKVLKCRDR GVVFLALVHFRYEFRDDGNFAAFGLSILPLPQSDYIQKV+Q LTASDGHGSSGGSTAASP VQPQPE PSSSRPSLPPPPRFVGSGNSGDR AGG+GAAAA TTALRGVSSASCSVPS SGV+TAVAASVAGEGDC LSRQPLPPLDLEVMQRRPGSLGG+G+G G+SADVSPG MA GGGGF
Sbjct: 1 MAENSARQNEAPVEGGDDGSNNDDTNTSYAPVPRMKKRPRGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAGACGEGRTCVSCRKSKVKXXXXXXXXXXXXXXLVCIAQVRGRGRPVASVTAGKKSLKLVEDGVGRSSKNGGGADDTSRSARVAKSMAAEAEPGSSHANGSGSSSRESS------GASPSSGVLSCAHPSLAGGGGG-IDGATAGSSGSMSTRKVRLSSSVEVPPLAAVASQISAGTSPSPLYAAAVDGEGSPRGDHGGDGGVGVGEGFLLAHHE-QRHFEACSRALPPRIMQSGTPTIAPPQQHXXXXXXXXXGVYGALHNSSARPLSAHXXXXXXXXXXXXXXXXXXLSDGGSMTAMNASASPGSISSAGGSWRGEFIGGPGAAAHAVGGLGGMGEISRNDIDVPNGQWEYMNGTEVATTTAKLEGEVNAPTSSSSPAESFAPMPMGHMANSGXXXXXXXXXXXXXXXXEXXXXXXXXXXXX----RGKGISSLSSDGGFNGAGKAPASTWVEAMDEHTHAVXXXXXXXXXXXXPTAGERGAXXXXXXXXPDGRIFLSKSEDKQQRWLIAVERGAEATGRDSGGRSPGANGGSVDPTEAIVSGFWKLFREHGIHRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQETPQYIQEMSSVFAAVSMRVVLRGQSSFHHNDVCGRLFLTTHEANEMYACDNQDVWATCIHPDDHKAFFDNLSMQLFRTPGHQSEFKKVLKCRDRTGVVFLALVHFRYEFRDDGNFAAFGLSILPLPQSDYIQKVEQTLTASDGHGSSGGSTAASPSVQPQPEMPSSSRPSLPPPPRFVGSGNSGDRRAGGMGAAAAATTALRGVSSASCSVPSFSGVMTAVAASVAGEGDCVLSRQPLPPLDLEVMQRRPGSLGGYGSGGGESADVSPG-----MAAGGGGF 975
BLAST of mRNA_E-siliculosus-1a_F_contig1332.2012.1 vs. uniprot
Match: D7FVP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVP7_ECTSI) HSP 1 Score: 1197 bits (3098), Expect = 0.000e+0 Identity = 821/1040 (78.94%), Postives = 839/1040 (80.67%), Query Frame = 1
Query: 1 MAGNKARQSEAPGEGGDDGSNNDCTNTTYAPVPRMKKRPRGEGGGVXXXXXXXXXXXXXEPKDSLSDEGDQAASSNSSAGACGEGRTCVSCRKSKXXXXXXXXXXXXXXXXXVCIAQVRGRGRPVASMTAGKKSLKLDEDEVGRSSKNGGGADDTSGSARVAKSVGAEAEPGSSHANXXXXXXXXXXXXXXXXGASPSSGVLSSAHSSLAGGXXXXIDGATTGGSGSMGTRKGRPSSSVEVPPLAAVASQIAAGTSPSPLYAAALDGEGSPRGDHGGDGGGGVGEGFLLAPLEHQRHFEAFSRALPPRIMQSGIPTIAPPQQXXXXXXXXQGVNGTLHNSSARPLSTHSLQFHGGGVGXXXXXXXXLSDGGSMAAMNASAAQGSISSAGGSWRGAFLGGPGPAAHAVGGLGGTGEVSRNDIDTPNGQWEYMNAPSVATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RRGKGISSLSSDGGFNGAGKVEASTWVEAMDEHTHAVXXXXXXXXXXXXPTAGERGAXXXXXXXXPDGEIFLSKSEDKQQRWLIAVEQGAEATGRDSGGRSPGANGGSVDPTEAIVSGFWKLFRDHEVHRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQETPQYIQEMSSVFAAVSMRVVLRGQSSFHHNDLCGRLFLTTQEANEMYASDNQDVWATCIHPDDHKTFFDNL----------------SMQLFRTPG--HQSEFKKVL-------------------------------------KCRDRIGVVFLALVHFRYEFRDDGNFAAFGLSILPLPQSDYIQKVDQPLTASDGHGSSGGSTAASPPVQPQPEGPSSSRPSLPPPPRFVGSGNSGDRGAGGVGAAAA---VTTALRGVSSASCSVPSSSGVVTAVAASVAGEGDCGLSRQPLPPLDLEVMQRRPGSLGGHGNGDGDSADVSPGGV 2940
MAGNKAR +EAP EGGDD SN+D T YAPVPRMKKRPRG+GGGV EPKDSLSDEGDQAASSNSSAGACGEGRTCVSCRKSK VCIAQVRGRGRPVASMTAGKKSLKLDED VGRSSKNGGGADDTS SARVAKSVGAE EPG XXXXXXXXXXXXXXXX VLSSAH SLAGG IDG+TTG SGSMGTR G+PSSSVEVPPLAAVASQIAAGTSPSPLYAAALDGEGSPRGDHGGDGGGGVGEGFLLAPLE QRH EA SRAL PRIMQSGIPTIAPPQQ XXXXX QGV G LHNSSARPLSTH LQFHGGG XXXXXXXX SDGGSMAAMNASAAQGSISSAGGSWRGAFLGGPGPAAHAVGGLGGTGEVSRNDIDTPNGQWEYMN PSVATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RRGK ISSLSSDGGFNGAGKV ASTWVEAMDEHTHAV XXXXXXXXXPTAG XXXXXXXXPDG SVDPTEAIVSGFWKLFR+HEVHRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQETPQYIQEMSSVFAAVSMRVVLRGQSSFHHND+CGRLFLTTQEANEMYASDNQDVWATCIHPDDH+ L S+++ ++ H + +L +CRDRIGVVFLALVHFRYEFRDDGNFAAFGLSILPLPQSDYIQ V+QPLTASDGHGSSGGSTAASPPVQPQPEGPSSSRPSLPPPPRFVGSGNSGDRGAGGV VTTALRGVSSASCSVPSSSGVVTAVAASVAGEGDCGLSRQPLPPLDLEVMQRRPGSLGGHG+G GDSADVSPGGV
Sbjct: 1 MAGNKARHNEAPCEGGDDRSNDD--GTMYAPVPRMKKRPRGQGGGVKEEDDMNYSSPPPEPKDSLSDEGDQAASSNSSAGACGEGRTCVSCRKSKL----------------VCIAQVRGRGRPVASMTAGKKSLKLDEDRVGRSSKNGGGADDTSRSARVAKSVGAEEEPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLSSAHPSLAGGGGGGIDGSTTGSSGSMGTRTGQPSSSVEVPPLAAVASQIAAGTSPSPLYAAALDGEGSPRGDHGGDGGGGVGEGFLLAPLE-QRHLEACSRALSPRIMQSGIPTIAPPQQHXXXXX--QGVYGALHNSSARPLSTHPLQFHGGGXXXXXXXXXXXSDGGSMAAMNASAAQGSISSAGGSWRGAFLGGPGPAAHAVGGLGGTGEVSRNDIDTPNGQWEYMNTPSVATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRRGKCISSLSSDGGFNGAGKVAASTWVEAMDEHTHAVAAGXXXXXXXXXPTAGXX--XXXXXXXXPDG---------------------------------------SVDPTEAIVSGFWKLFREHEVHRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQETPQYIQEMSSVFAAVSMRVVLRGQSSFHHNDVCGRLFLTTQEANEMYASDNQDVWATCIHPDDHQDLLRQLIDAALPYSWAPVRVQESVEVMQSAAVSHSERIRPLLVYPPYPAASAALRERTNALGVSTILFIVFLLRLPDHLQCRDRIGVVFLALVHFRYEFRDDGNFAAFGLSILPLPQSDYIQNVEQPLTASDGHGSSGGSTAASPPVQPQPEGPSSSRPSLPPPPRFVGSGNSGDRGAGGVXXXXXXXXVTTALRGVSSASCSVPSSSGVVTAVAASVAGEGDCGLSRQPLPPLDLEVMQRRPGSLGGHGSGGGDSADVSPGGV 978
BLAST of mRNA_E-siliculosus-1a_F_contig1332.2012.1 vs. uniprot
Match: A0A6H5KRC5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC5_9PHAE) HSP 1 Score: 108 bits (270), Expect = 2.430e-20 Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = -1
Query: 2095 LVVGGVHLVRLLRGQEEAAAQVIVVEAALPPKHHPHRHGREHRRHLLDVLWGLLVAELRGGHR 2283
LVV GVHLVRL+RGQEEAAA V+VV+AALPPKH+PHRHGREHRRHLLDVL GLLV E RG HR
Sbjct: 658 LVVAGVHLVRLVRGQEEAAAHVVVVKAALPPKHNPHRHGREHRRHLLDVLRGLLVTEFRGRHR 720 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1332.2012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1332.2012.1 >prot_E-siliculosus-1a_F_contig1332.2012.1 ID=prot_E-siliculosus-1a_F_contig1332.2012.1|Name=mRNA_E-siliculosus-1a_F_contig1332.2012.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=992bp MAGNKARQSEAPGEGGDDGSNNDCTNTTYAPVPRMKKRPRGEGGGVKEEDback to top mRNA from alignment at E-siliculosus-1a_F_contig1332:24873..31257- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1332.2012.1 ID=mRNA_E-siliculosus-1a_F_contig1332.2012.1|Name=mRNA_E-siliculosus-1a_F_contig1332.2012.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6385bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1332:24873..31257- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1332:24873..31257- >mRNA_E-siliculosus-1a_F_contig1332.2012.1 ID=mRNA_E-siliculosus-1a_F_contig1332.2012.1|Name=mRNA_E-siliculosus-1a_F_contig1332.2012.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5952bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1332:24873..31257- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |