mRNA_E-siliculosus-1a_F_contig1330.2003.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1330.2003.1 vs. uniprot
Match: A0A6H5KZU3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU3_9PHAE) HSP 1 Score: 179 bits (455), Expect = 9.840e-52 Identity = 108/161 (67.08%), Postives = 121/161 (75.16%), Query Frame = 1
Query: 280 LQQLRGGRMMGSSPSHCVGGLRIATQSEALAVIIPVPHQNTGLHAPGLLNAPDHVLPSNNQVPNAEDVGAEHPPPGYVVPVEASADDAEPLTTEIKGVELLQEGSGGWAG--VETYVTSTNELNGNGGVFVAPLGGGTSVDSAKEGEE-EAFCAGGDADTR 753
+ LRG MMGSSP H +GGL+IA +SEAL V+IPVPHQN GL+A GLLN + S+NQV NAEDV A+HP PGY+VPV+ASADDA+PLT KGVE LQEGSGG AG VET +TS E N N G FVAPLGGG SVDSAK EE EAF A G ADTR
Sbjct: 18 ISALRGWGMMGSSPGHRIGGLKIAARSEALTVVIPVPHQNKGLYASGLLNV---RVSSDNQVTNAEDVAAKHPLPGYIVPVQASADDADPLTAN-KGVEALQEGSGGGAGTDVETTMTSKAEFNRNAGTFVAPLGGG-SVDSAKTSEEDEAFFATGHADTR 173
BLAST of mRNA_E-siliculosus-1a_F_contig1330.2003.1 vs. uniprot
Match: A0A6H5J5K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5K9_9PHAE) HSP 1 Score: 165 bits (418), Expect = 1.140e-44 Identity = 102/154 (66.23%), Postives = 114/154 (74.03%), Query Frame = 1
Query: 289 LRGGRMMGSSPSHCVGGLRIATQSEALAVIIPVPHQNTGLHAPGLLNAPDHVLPSNNQVPNAEDVGAEHPPPGYVVPVEASADDAEPLTTEIKGVELLQEGSGGWAG--VETYVTST--NELNGNGGVFVAPLGGGTSVDSAKEGEEEAFCAGG 738
LRGG MMGSSP H +GGL+IA SEAL I P PHQN L+APGLLNA + ++NQVPNAEDV AEHP GY+VPV+A+ADD E L KGVELLQEGS G G VET+VTST N+ NGNGG FVAP+GGG SVDSA EEEAF GG
Sbjct: 21 LRGGGMMGSSPGHRIGGLKIAAASEAL--INPAPHQNKRLYAPGLLNA---RVSNDNQVPNAEDVVAEHPLRGYIVPVQAAADDEEHLAAN-KGVELLQEGSDGGGGTDVETHVTSTCTNDFNGNGGAFVAPVGGG-SVDSAMNSEEEAFPMGG 167
BLAST of mRNA_E-siliculosus-1a_F_contig1330.2003.1 vs. uniprot
Match: A0A6H5JVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI1_9PHAE) HSP 1 Score: 105 bits (262), Expect = 1.790e-22 Identity = 61/93 (65.59%), Postives = 68/93 (73.12%), Query Frame = 1
Query: 289 LRGGRMMGSSPSHCVGGLRIATQSEALAVIIPVPHQNTGLHAPGLLNAPDHVLPSNNQVPNAEDVGAEHPPPGYVVPVEASADDAEPLTTEIK 567
LRGGR+MGSSP H +GGL+ A SEAL I P QN L+APGLLNA S + PNAEDV AEHP PGY+VPV+ASADDAEPLT EIK
Sbjct: 16 LRGGRIMGSSPGHRIGGLKKAAASEAL--INPASRQNKRLYAPGLLNA----RASRDYQPNAEDVVAEHPLPGYIVPVQASADDAEPLTWEIK 102
BLAST of mRNA_E-siliculosus-1a_F_contig1330.2003.1 vs. uniprot
Match: D7FNC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC7_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 5.870e-20 Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query: 343 RIATQSEALAVIIPVPHQNTGLHAPGLLNAPDHVLPSNNQVPNAEDVGAEHPPPGYVVPVEASADDAEPLTTEIK 567
RIA+ SEAL VI+P PHQN L+AP LLNA +NQV NAEDV AEHP PGY+VPV+ASADDAEPLTTEIK
Sbjct: 5 RIASPSEALTVIVPAPHQNKRLYAPELLNA---RASEDNQVTNAEDVVAEHPLPGYIVPVQASADDAEPLTTEIK 76
BLAST of mRNA_E-siliculosus-1a_F_contig1330.2003.1 vs. uniprot
Match: D7G964_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G964_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 2.910e-19 Identity = 80/175 (45.71%), Postives = 94/175 (53.71%), Query Frame = 1
Query: 355 QSEALAVIIPVPHQNTGLH-APGLLNAP---------DHVLPSNN-QVPNAEDVGAEHPPPGYVVPVEASADDA----------------------------EPLTTEIKGVELLQEGSGGWAGVETYVTSTNELNGNGGVFVAPLGGGTSVDSAK--EGEEEAFCAGGDADTRV 756
+SEA A I P GL+ APG A + LPS++ QV NAED HPPP +VP + +A+ A E L+TE GVE+LQEGSGG A VETYV +T+E NGNGG FVAPLGGGTSVDSAK EG E F GG AD R+
Sbjct: 50 RSEAFAAIAIHPVGQPGLNNAPGFPKARASTTNRLGLESNLPSDDKQVANAEDDVPAHPPPFCIVPTQTTAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXEQLSTE--GVEVLQEGSGGSADVETYVQTTHEFNGNGGGFVAPLGGGTSVDSAKGLEGGEAFFATGG-ADARM 221
BLAST of mRNA_E-siliculosus-1a_F_contig1330.2003.1 vs. uniprot
Match: A0A6H5K2H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H8_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.510e-16 Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 559 EIKGVELLQEGSGGWAGVETYVTSTNELNGNGGVFVAPLGGGTS-VDSAKEGE-EEAFCAGGDADTRV 756
+ +GVELLQEG GGWA VET +TST+E +GNGG FVAPLGGGTS VDS K E +EAF A GDADTR+
Sbjct: 79 DTRGVELLQEGGGGWADVETTMTSTDEFSGNGGAFVAPLGGGTSSVDSTKGLEKDEAFFATGDADTRM 146 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1330.2003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1330.2003.1 >prot_E-siliculosus-1a_F_contig1330.2003.1 ID=prot_E-siliculosus-1a_F_contig1330.2003.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2003.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=168bp MDGNNMMTMLQQLRGGRMMGSSPSHCVGGLRIATQSEALAVIIPVPHQNTback to top mRNA from alignment at E-siliculosus-1a_F_contig1330:28340..32276+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1330.2003.1 ID=mRNA_E-siliculosus-1a_F_contig1330.2003.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2003.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3937bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1330:28340..32276+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1330:28340..32276+ >mRNA_E-siliculosus-1a_F_contig1330.2003.1 ID=mRNA_E-siliculosus-1a_F_contig1330.2003.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2003.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1330:28340..32276+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |