mRNA_E-siliculosus-1a_F_contig133.1994.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig133.1994.1
Unique NamemRNA_E-siliculosus-1a_F_contig133.1994.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig133.1994.1 vs. uniprot
Match: A0A6H5L263_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L263_9PHAE)

HSP 1 Score: 779 bits (2012), Expect = 1.310e-282
Identity = 413/447 (92.39%), Postives = 423/447 (94.63%), Query Frame = 1 
Query:   34 MASFGKQRQWGLLRFILAMAVGSIDLGAAVILVYNEGTTRFDDVPSMDNFGPRIPEEGFAGRLQLAQPNVYACSAISGPTSTTAVAAAAAAKEAAGELDFGGATPPSRTRAHGGVSRGMPLAVSRQPPRGEILEAASTTAAATEPA--AAGEEDLPSAALISRSEKDDPNGCTFETKVLNAQAAGFSMVIVYDSRQENLFKMGRSSAKGGKHPQVEIPLVLVTHASGLALKALIATTSDTRGPEVYVDNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTLTVGLAPPTSSSPXXXXXXXXXXXXVITAPAMQAAHADGGERGDNGAGGDRLPLLSNSRGAPIGGGSIQDTSPV 1368
            M S+GKQRQWGLLR +LAMA+GSIDLGAAVILVYNEGTTRFDDVPSMDNFGPRIPEEGFAGRLQLAQPNVYACSAISGP STTAVA+A A  EAAGELDFGGA PPSRTRAH GVSRGMPLAVSRQPPRGEILEA STTAAAT     AAGEEDLPSAALISRSEKDDP+GCTFETKVLNAQ AGFSMVIVYDSR+ENLFKMGRSS+KG KHP+VEIPLVLV+HASGLALKALI T SDTRGPEVYVDNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTLTVGLAPPTSSSP  XXXXXXXX  VITAPAMQ AHADG ERGD+GAGGDRLPLLSNSRGAPIGGGSIQDTSPV
Sbjct:    1 MTSYGKQRQWGLLRVVLAMAIGSIDLGAAVILVYNEGTTRFDDVPSMDNFGPRIPEEGFAGRLQLAQPNVYACSAISGPLSTTAVASATAVNEAAGELDFGGAAPPSRTRAHSGVSRGMPLAVSRQPPRGEILEAVSTTAAATXXXXXAAGEEDLPSAALISRSEKDDPSGCTFETKVLNAQGAGFSMVIVYDSREENLFKMGRSSSKGAKHPKVEIPLVLVSHASGLALKALIETASDTRGPEVYVDNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTLTVGLAPPTSSSPSSXXXXXXXXAAVITAPAMQPAHADGVERGDDGAGGDRLPLLSNSRGAPIGGGSIQDTSPV 447
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig133.1994.1 vs. uniprot
Match: A0A835Z7P9_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P9_9STRA)

HSP 1 Score: 183 bits (464), Expect = 8.760e-50
Identity = 108/244 (44.26%), Postives = 146/244 (59.84%), Query Frame = 1 
Query:  472 AAGEEDLPSAALISRSEKD----DPNGCTFETKVLNAQAAGFSMVIVYDSRQENLFKMGRSSAKGGKHPQVEIPLVLVTHASGLALKALIATTSDTRGPEVYVDNTDPFG-MFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTN--RPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLT------------QRQRSCPMCKDPVT 1146
            A G+ D+P  ALISRS +     DP  CTF  KV NA  AG ++ +V+D   E LF+M R  A GG     +IP VL++ +SG  L AL    +D  GP V+VD +DP+  MF ++++TM  +V GFL +LL C S+ + T HR LRRY+++       RP+SL + L++PE  V  G  LE DSC +CLEAYR+GDK+  L C H  HA C+ PWL             +RQR+CP+CK  VT
Sbjct:   77 AVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQR--ATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT 318
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig133.1994.1 vs. uniprot
Match: G3VTW2_SARHA (RING-type E3 ubiquitin transferase n=15 Tax=Metatheria TaxID=9263 RepID=G3VTW2_SARHA)

HSP 1 Score: 112 bits (279), Expect = 7.200e-24
Identity = 76/203 (37.44%), Postives = 110/203 (54.19%), Query Frame = 1 
Query:  541 CTFETKVLNAQAAGFSMVIVYDSRQENLFKMGRSSAKGGKHPQVEIPLVLVTHASGLALKALIATTSDTRGPEVYV--DNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPV 1143
            C F+ KVLNAQ AG+   +VY+     L  M  +S +     Q+ IP V V   S   L++L       +G  V +  DNT P G +    L  F  V G L+  L  G+++VV   ++ +R +      NR +S  ++ Q+P    ++G   E D C +CLE Y  GDKLR LPC HA+H+ C+ PWLTQ +++CP+CK PV
Sbjct:   92 CNFDLKVLNAQKAGYRAAVVYNVNSNELLNMVWNSEE--IQQQIWIPSVFVGETSSEYLRSLFVYD---KGARVLLVPDNTFPLGYY----LIPFTGVVGLLV--LAMGAVLVVRCIQHRKRLQR-----NR-LSKEQLKQIPTHNYQKGD--EYDVCAICLEEYEDGDKLRILPCAHAYHSHCVDPWLTQTRKTCPICKQPV 275
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig133.1994.1 vs. uniprot
Match: UPI0004431BC1 (E3 ubiquitin-protein ligase RNF167 isoform X2 n=2 Tax=Monodelphis domestica TaxID=13616 RepID=UPI0004431BC1)

HSP 1 Score: 110 bits (276), Expect = 1.670e-23
Identity = 75/203 (36.95%), Postives = 110/203 (54.19%), Query Frame = 1 
Query:  541 CTFETKVLNAQAAGFSMVIVYDSRQENLFKMGRSSAKGGKHPQVEIPLVLVTHASGLALKALIATTSDTRGPEVYV--DNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPV 1143
            C F+ KVLNAQ AG+   +VY+     L  M  +S +     Q+ IP V V   S   L++L       +G  V +  DNT P G +    L  F  + G L+  L  G+++VV   ++ +R +      NR +S  ++ Q+P    ++G   E D C +CLE Y  GDKLR LPC HA+H+ C+ PWLTQ +++CP+CK PV
Sbjct:   85 CNFDLKVLNAQRAGYRAAVVYNVNSNELLNMVWNSEE--IQQQIWIPSVFVGETSSEYLRSLFVYD---KGARVLLVPDNTFPLGYY----LIPFTGIVGLLV--LAMGAVLVVRCIQHRKRLQR-----NR-LSKEQLKQIPTHDYQKGD--EYDVCAICLEEYEDGDKLRVLPCAHAYHSHCVDPWLTQTRKTCPICKQPV 268
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig133.1994.1 vs. uniprot
Match: F7D206_MONDO (RING-type E3 ubiquitin transferase n=6 Tax=Metatheria TaxID=9263 RepID=F7D206_MONDO)

HSP 1 Score: 110 bits (276), Expect = 1.880e-23
Identity = 75/203 (36.95%), Postives = 110/203 (54.19%), Query Frame = 1 
Query:  541 CTFETKVLNAQAAGFSMVIVYDSRQENLFKMGRSSAKGGKHPQVEIPLVLVTHASGLALKALIATTSDTRGPEVYV--DNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPV 1143
            C F+ KVLNAQ AG+   +VY+     L  M  +S +     Q+ IP V V   S   L++L       +G  V +  DNT P G +    L  F  + G L+  L  G+++VV   ++ +R +      NR +S  ++ Q+P    ++G   E D C +CLE Y  GDKLR LPC HA+H+ C+ PWLTQ +++CP+CK PV
Sbjct:   92 CNFDLKVLNAQRAGYRAAVVYNVNSNELLNMVWNSEE--IQQQIWIPSVFVGETSSEYLRSLFVYD---KGARVLLVPDNTFPLGYY----LIPFTGIVGLLV--LAMGAVLVVRCIQHRKRLQR-----NR-LSKEQLKQIPTHDYQKGD--EYDVCAICLEEYEDGDKLRVLPCAHAYHSHCVDPWLTQTRKTCPICKQPV 275
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig133.1994.1 vs. uniprot
Match: A0A8E0S1D5_9TREM (E3 ubiquitin-protein ligase RNF13 n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0S1D5_9TREM)

HSP 1 Score: 111 bits (277), Expect = 3.790e-23
Identity = 82/233 (35.19%), Postives = 123/233 (52.79%), Query Frame = 1 
Query:  487 DLPSAALISRSEKDDPNGCTFETKVLNAQAAGFSMVIVYDSRQENLFKMGRSSAKGGKHPQVEIPLVLVTHASGLALKALIATTSDTRGPEVYVDNTDPFGMFVT-VDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTLTVGLAPPTSSS 1182
            DLP   LI R       GC F+ KV+NAQ A FS VIVY++    +F MG  S K G    + IP V+V+  +G  LKA   + +D R  E  V     + + +  V L++ +LV   L+ L+ C +  +  + R +RR           +S   + +L   R E+ +R   ++CP+CLE ++  DK+R LPC HAFH  CI PWL + +R CP+C   V L+    PP++ +
Sbjct:   33 DLPFIVLIER------GGCDFDLKVINAQKANFSGVIVYNTVPNEIFPMGGGSYKDG----ISIPAVMVSKMAGEKLKAF--SVAD-RQKEFVVSMVSFYSLPLKYVLLSLLVLVGVSLIILIVCFAAHLCNMWRRMRRGR---------LSRRHLRRLQTKRFEK-ARDPYETCPICLEDFKDRDKIRILPCHHAFHTRCIDPWLLRNRRRCPVCNQTVELS---GPPSNEA 239
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig133.1994.1 vs. uniprot
Match: UPI001BC95D53 (E3 ubiquitin-protein ligase RNF167-like n=1 Tax=Vulpes lagopus TaxID=494514 RepID=UPI001BC95D53)

HSP 1 Score: 108 bits (269), Expect = 1.230e-22
Identity = 71/212 (33.49%), Postives = 110/212 (51.89%), Query Frame = 1 
Query:  538 GCTFETKVLNAQAAGFSMVIVYDSRQENLFKMGRSSAKGGKHPQVEIPLVLVTHASGLALKALIATTSDTRGPEVYVDNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHR-YLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTLTVGLAPP 1170
            GC F+ KVLNAQ AGF   +V++   + L  M R  A+  +  Q+ IP V V  +S   L+AL       +G +V +   D   + +   L  F  V G L+     G ++    H+  LRR           ++  ++ ++P    + G+    D C +CL+AY +G++LR LPC HA+H+ C+ PWLTQ +R+CP+CK PV  + G   P
Sbjct:   56 GCDFDLKVLNAQRAGFGAAVVHNVHSDALLSMARGGAEAQQ--QIAIPAVFVGESSAEYLRALFVYD---KGAQVLLVPDD--NLLLGYCLIPFTGVVGLLVVASGAGLVVRFVQHQGQLRRAR---------LTREQLERIPTRDHQRGA--PDDVCAICLDAYEVGERLRVLPCAHAYHSRCVDPWLTQARRTCPVCKQPVRRSPGAGGP 249
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig133.1994.1 vs. uniprot
Match: A0A2K5QW97_CEBIM (RING-type E3 ubiquitin transferase n=3 Tax=Simiiformes TaxID=314293 RepID=A0A2K5QW97_CEBIM)

HSP 1 Score: 108 bits (269), Expect = 2.140e-22
Identity = 71/203 (34.98%), Postives = 111/203 (54.68%), Query Frame = 1 
Query:  541 CTFETKVLNAQAAGFSMVIVYDSRQENLFKMGRSSAKGGKHPQVEIPLVLVTHASGLALKALIATTSDTRGPEVYV--DNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPV 1143
            C F+ KVLNAQ AG+   +V++     L  M  +S +     Q+ IP V +   S   L+AL       +G +V +  DNT P G +    L  F  + G L+  L  G++M+V   ++ +R +      NR ++  ++ Q+P    ++G +   D C +CL+ Y  GDKLR LPC HA+H+ C+ PWLTQ +++CP+CK PV
Sbjct:   92 CNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEE--IQQQIWIPSVFIGERSSEYLRALFVYE---KGAQVLLVPDNTFPLGYY----LIPFTGIVGLLV--LAMGAVMIVRCIQHRKRLQR-----NR-LTKDQLKQIPTHDYQKGDQY--DVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig133.1994.1 vs. uniprot
Match: A0A5F7ZRI1_MACMU (RING-type E3 ubiquitin transferase n=4 Tax=Boreoeutheria TaxID=1437010 RepID=A0A5F7ZRI1_MACMU)

HSP 1 Score: 107 bits (267), Expect = 3.220e-22
Identity = 71/203 (34.98%), Postives = 110/203 (54.19%), Query Frame = 1 
Query:  541 CTFETKVLNAQAAGFSMVIVYDSRQENLFKMGRSSAKGGKHPQVEIPLVLVTHASGLALKALIATTSDTRGPEVYV--DNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPV 1143
            C F+ KVLNAQ AG+   +V++     L  M  +S +     Q+ IP V +   S   L+AL       +G  V +  DNT P G +    L  F  + G L+  L  G++M+V   ++ +R +      NR ++  ++ Q+P    ++G +   D C +CL+ Y  GDKLR LPC HA+H+ C+ PWLTQ +++CP+CK PV
Sbjct:   80 CNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEE--IQQQIWIPSVFIGERSSEYLRALFVYE---KGARVLLVPDNTFPLGYY----LIPFTGIVGLLV--LAMGAVMIVRCIQHRKRLQR-----NR-LTKEQLKQIPTHDYQKGDQY--DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 263
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig133.1994.1 vs. uniprot
Match: U3D921_CALJA (RING-type E3 ubiquitin transferase n=48 Tax=Boreoeutheria TaxID=1437010 RepID=U3D921_CALJA)

HSP 1 Score: 107 bits (267), Expect = 3.990e-22
Identity = 71/203 (34.98%), Postives = 110/203 (54.19%), Query Frame = 1 
Query:  541 CTFETKVLNAQAAGFSMVIVYDSRQENLFKMGRSSAKGGKHPQVEIPLVLVTHASGLALKALIATTSDTRGPEVYV--DNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPV 1143
            C F+ KVLNAQ AG+   +V++     L  M  +S +     Q+ IP V +   S   L+AL       +G  V +  DNT P G +    L  F  + G L+  L  G++M+V   ++ +R +      NR ++  ++ Q+P    ++G +   D C +CL+ Y  GDKLR LPC HA+H+ C+ PWLTQ +++CP+CK PV
Sbjct:   92 CNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEE--IQQQIWIPSVFIGERSSEYLRALFVYE---KGARVLLVPDNTFPLGYY----LIPFTGIVGLLV--LAMGAVMIVRCIQHRKRLQR-----NR-LTKEQLKQIPTHDYQKGDQY--DVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig133.1994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L263_9PHAE1.310e-28292.39RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z7P9_9STRA8.760e-5044.26RING-type domain-containing protein n=1 Tax=Tribon... [more]
G3VTW2_SARHA7.200e-2437.44RING-type E3 ubiquitin transferase n=15 Tax=Metath... [more]
UPI0004431BC11.670e-2336.95E3 ubiquitin-protein ligase RNF167 isoform X2 n=2 ... [more]
F7D206_MONDO1.880e-2336.95RING-type E3 ubiquitin transferase n=6 Tax=Metathe... [more]
A0A8E0S1D5_9TREM3.790e-2335.19E3 ubiquitin-protein ligase RNF13 n=1 Tax=Fasciolo... [more]
UPI001BC95D531.230e-2233.49E3 ubiquitin-protein ligase RNF167-like n=1 Tax=Vu... [more]
A0A2K5QW97_CEBIM2.140e-2234.98RING-type E3 ubiquitin transferase n=3 Tax=Simiifo... [more]
A0A5F7ZRI1_MACMU3.220e-2234.98RING-type E3 ubiquitin transferase n=4 Tax=Boreoeu... [more]
U3D921_CALJA3.990e-2234.98RING-type E3 ubiquitin transferase n=48 Tax=Boreoe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig133contigE-siliculosus-1a_F_contig133:28280..33696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1371
Model size1371
Exons7
Ec32 orthologEc-09_000080.1
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Hectar predicted targeting categorysignal anchor
BRITEko00000,ko01000,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC2.3.2.27
EggNOG OGsKOG4628@1,KOG4628@2759
EggNOG free text desc.protein modification by small protein conjugation or removal
KEGG koko:K15692,ko:K15706
Seed eggNOG ortholog2880.D7FRI5
Seed ortholog evalue3.3e-221
Seed ortholog score774.2
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927850.0049849-CDS-E-siliculosus-1a_F_contig133:28279..286061622927850.0049849-CDS-E-siliculosus-1a_F_contig133:28279..28606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 28280..28606 -
1696318707.3790371-CDS-E-siliculosus-1a_F_contig133:28279..286061696318707.3790371-CDS-E-siliculosus-1a_F_contig133:28279..28606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 28280..28606 -
1622927850.016233-CDS-E-siliculosus-1a_F_contig133:28952..290671622927850.016233-CDS-E-siliculosus-1a_F_contig133:28952..29067Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 28953..29067 -
1696318707.3979635-CDS-E-siliculosus-1a_F_contig133:28952..290671696318707.3979635-CDS-E-siliculosus-1a_F_contig133:28952..29067Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 28953..29067 -
1622927850.0286963-CDS-E-siliculosus-1a_F_contig133:29777..298731622927850.0286963-CDS-E-siliculosus-1a_F_contig133:29777..29873Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 29778..29873 -
1696318707.4079816-CDS-E-siliculosus-1a_F_contig133:29777..298731696318707.4079816-CDS-E-siliculosus-1a_F_contig133:29777..29873Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 29778..29873 -
1622927850.0434716-CDS-E-siliculosus-1a_F_contig133:30685..308341622927850.0434716-CDS-E-siliculosus-1a_F_contig133:30685..30834Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 30686..30834 -
1696318707.4232988-CDS-E-siliculosus-1a_F_contig133:30685..308341696318707.4232988-CDS-E-siliculosus-1a_F_contig133:30685..30834Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 30686..30834 -
1622927850.0594678-CDS-E-siliculosus-1a_F_contig133:31192..313181622927850.0594678-CDS-E-siliculosus-1a_F_contig133:31192..31318Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 31193..31318 -
1696318707.4409945-CDS-E-siliculosus-1a_F_contig133:31192..313181696318707.4409945-CDS-E-siliculosus-1a_F_contig133:31192..31318Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 31193..31318 -
1622927850.079478-CDS-E-siliculosus-1a_F_contig133:32373..327271622927850.079478-CDS-E-siliculosus-1a_F_contig133:32373..32727Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 32374..32727 -
1696318707.4508204-CDS-E-siliculosus-1a_F_contig133:32373..327271696318707.4508204-CDS-E-siliculosus-1a_F_contig133:32373..32727Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 32374..32727 -
1622927850.0951686-CDS-E-siliculosus-1a_F_contig133:33492..336961622927850.0951686-CDS-E-siliculosus-1a_F_contig133:33492..33696Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 33493..33696 -
1696318707.4597645-CDS-E-siliculosus-1a_F_contig133:33492..336961696318707.4597645-CDS-E-siliculosus-1a_F_contig133:33492..33696Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig133 33493..33696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig133.1994.1prot_E-siliculosus-1a_F_contig133.1994.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig133 28280..33696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig133.1994.1

>prot_E-siliculosus-1a_F_contig133.1994.1 ID=prot_E-siliculosus-1a_F_contig133.1994.1|Name=mRNA_E-siliculosus-1a_F_contig133.1994.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=457bp
RPPHRNTRYGEMASFGKQRQWGLLRFILAMAVGSIDLGAAVILVYNEGTT
RFDDVPSMDNFGPRIPEEGFAGRLQLAQPNVYACSAISGPTSTTAVAAAA
AAKEAAGELDFGGATPPSRTRAHGGVSRGMPLAVSRQPPRGEILEAASTT
AAATEPAAAGEEDLPSAALISRSEKDDPNGCTFETKVLNAQAAGFSMVIV
YDSRQENLFKMGRSSAKGGKHPQVEIPLVLVTHASGLALKALIATTSDTR
GPEVYVDNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRR
YESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLR
SLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTLTVGLAPPTSSSPSSSSA
SSAAPAAVITAPAMQAAHADGGERGDNGAGGDRLPLLSNSRGAPIGGGSI
QDTSPV*
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mRNA from alignment at E-siliculosus-1a_F_contig133:28280..33696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig133.1994.1 ID=mRNA_E-siliculosus-1a_F_contig133.1994.1|Name=mRNA_E-siliculosus-1a_F_contig133.1994.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5417bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig133:28280..33696- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGACCACCACATCGCAACACACGTTACGGCGAGATGGCATCCTTTGGAAA
GCAGCGGCAATGGGGGTTGTTGAGATTCATTTTAGCCATGGCCGTTGGCA
GCATTGACCTGGGCGCAGCCGTAATACTGGTGTACAACGAGGGCACGACG
CGGTTCGATGATGTGCCGTCGATGGACAACTTCGGTCCGAGAATACCTGA
AGAGGTGAAGTTGCTGAGCTGAGGTTGCACTAGTAGACTGGTATTCCTTG
AAGCAGAGTGGTTAACGGAAGGTATTGGGAACGCCGCCCAACCGGAGGAA
TCGGGAATGCTGCCCTCGCATTTCCTCCATATCTCGTTCTCTGTCTGTCT
CTGTGCCTCTGTGTGGAGTATCACGAAAAAGAGCGGTTTTGAAAGACCTG
GGTTTATCTTCTGTAAGGCTGGCTCTTCACGTTCAGGTGCTTGTGAACTT
GTGAACATCTATTGTAACAACTCTTGAGCGCTTCGAACTCTGAACGGTCT
TTTATCTTCTGCCCTTTTGAACACCACGAAGTTTCAGCTAGTGACCCCTT
TTTAATATTTCTCTTGTATGCGTATGCATACCGACAGCAGGCAGCAGAAT
AGTGTGTAAAAACTCTACGCCTGCCTCCCCCCCTGCAGCTTTCATTGCTG
CTGCCTCAGCTTTCTTTACCCCTGCTTTGCTGATGCCGCTATTGTATCGC
CCTCTAATCATAATGTGTTCCAAGTACTGCAGCTGCTCTTTTTTTTTTTT
CTCAACATGACCCAACGAATCCACCTCCATCGATAGAAAAGAGATACGTA
GATAGATTAGCAATGGACCCATAGCGTCAGCGGAGGCTACCTGTATTTCC
ACGATTTGGTCTTGTTTTGTTCACATTAATAACCGTTGCGGTGTTCCGGT
CTCCGCTCATATGTACCTTGTAATGTCCGTACTGGTCCAACTGCTCTTGT
ACGACCGAAAAATCCGCAGGGATTCGCAGGACGGCTCCAACTAGCGCAAC
CGAACGTGTACGCCTGTTCCGCCATCAGCGGGCCAACATCCACCACAGCA
GTAGCGGCAGCAGCAGCCGCTAAAGAGGCAGCGGGCGAATTAGATTTTGG
AGGCGCCACTCCACCATCAAGGACCCGCGCACACGGCGGGGTAAGCCGCG
GCATGCCACTGGCAGTATCGCGGCAACCCCCTCGCGGCGAGATCTTGGAG
GCGGCTTCGACGACAGCGGCGGCGACGGAGCCGGCGGCAGCTGGAGAGGA
AGATCTTCCTTCGGCTGCGCTCATCTCGAGGTCGGAGAAGGATGACCCTA
ATGGGTGCACCTTCGAGACCAAGGTGAGAGAGCGGCGGGTCTAGAGGACG
GCTAGCCCGTTGTTCCAAGTTCCAAGGCGTACTGATCAAAACACGGCAGG
CGGTATCGACAGAATATGGAGGCGTGATGTGGTGATGTGGTGGTGGTCGT
GGGGTTTGGGGGTCGGATCTGGTGCGTCCGTCACCAAGCTGCCTACAAAC
AATACCAATACGAGAGGTGACACGTGGTATGTCGTTTTCCTTTTTCAGTC
TGTTTTGATGTGATCGATGGTGATTACCTCCCGATACCGCCAATGCTACA
TACTACAGCAGAGCGTCCTGCCAACAATCAACGGTCCCCTTTGTTCCCAC
GCACCACTCCCCCTTCTAGCCTACTTGTAACACCCCATGGTAGTTTGCTC
AGAACCATGTACGCTCGGTTCTTCTTTGCGCTCGGTCGTGTGGGGAGGGG
GAGGGGTGTTGTGCCTTAACCTGGAGAAAGTATTTTACTGGTACTTGCAG
TGCAAAACATTCTGAGCGTAGCGGGTTGGAATTGCCGGATGAACGTGAGG
GAAGGCCGTACCAGCGGTCAGACGGAGGAATAAGGTGGCACAAAGATGTA
CCCGTGGACACACAGACGTGCCCATATGACGAAGGCAGAGGGAGAGCATA
TTGTACGATGTCTTTAAATAGAGAACGTGATCCCTGGACTGGACAAAAAG
AGACCTGCCGTCGTCGGGGGGCAAGACCAGAAAAAGTAGAGGAGGCGGTG
GTGTGACGACATGAGGCGGGAAACGCGTGCGATACACAGCATTCAAGTTT
GAGAAGCGTCTTGGGTTGGGATCAGGATCAGAGGTGCTCCTACCTCCAAG
TGTTGCTGAATGGCCAACAGCTATCTAAGCAACAGAAGAGGACAAGCCCC
GTATCTATGGTGGTGACAAGCACGTTACTTCCCATGTAAATGCCGAACGA
AACACAGAACAACGCATCATGTGTTGGCTTTTCGGAAGCACAGAGGGGAG
TGGTGATGTTGTCCAGCGCTGAACATCCACCGCAACCCCCCCCCCGTCGG
CCTTTCTACTCTACTCTACTCTACTTAGGTCCTTAACGCGCAGGCTGCGG
GGTTCAGCATGGTGATCGTGTACGACTCTCGACAGGAGAACCTGTTCAAG
ATGGGCAGAAGCTCCGCCAAGGGGGGCAAGCATCCGCAGGTCGAGATACC
GTTGGTGAGTGAGTGCGTGAGTGTCGCCTTGCATTGCCTAGACTGAAACG
GTAATGCCAAGGCCTTGATGACTGTTTTCTTGTGGTATTTTGTTTCGGCT
GGGTGCGTGACATTGGGGCAGAATCGAACTCGAACGGCAGCAGGCGACAA
ATGCTCTGTCCGGAGAATGGCTCCGTGGTCATTTTTCGTTGTATCAATTC
CAACCGCGCTGAGCCCTGGTTGTGGAAAGACGGTACAGTAGGCTCCATCG
TATTGAGCGCAATCTGATACACCGACATCAGCAACAACAGGAGAGCAACA
ACTCGTATTTTTTAGCAATGTTCGATCAACAAACCACAATGATGACGACA
ACACACCACCAGGTGTTGGTTACGCATGCGTCTGGCCTGGCTTTGAAGGC
GTTGATCGCGACTACGTCTGACACCCGCGGACCAGAGGTGTACGTGGACA
ACACAGACCCCTTCGGCATGTTTGTGACGGTCGATCTCACCATGTTCATG
CTTGTCACCGGGTGAGTGTTGCTTCGAGAGACGGAAGAGGAGACTTCGTT
TGGCTGCTGCATCAAAAATGGGCAGGTGTATTGTCGTTGGGCATTTCTGC
ACGGCGGATCATCGATGTCGTGCTTCTGGCTTTTGTTGCGGCCTGTCTTG
TTGAGCAGCCTACGTGAGTCACCACAAACGAGATTTCCGGGGGACTGGAT
GATGGTACCGGACGAAACCCTGTCGGCGACTGCTGTGCTGATTGTCTAGG
CAATCCAGAAAGTTATTTTCCGTTGTTGTCTTGCATACATGCTCCTTTGG
CGTGTCCTCAAAGATTGATCCTACCGTGCTTGCAACGTACTGGCCAAGAG
GTACTTTGGGAGGAGGTGGTTGTGCGTTACGTGTGCATAGTTTCGGTTTG
TGTCGGTCGGACTGCTGTGCTGTACCGCGCTTCTTCCTGTGTTGTGGTTT
CCTGTTGCGTTTCGCTGTGTTTTGCTGTCTCAAATCCTCAAAGCCAGCTG
CTTGAGCGTTTTCATAGCTGCTCGGCGACGTATGTACCCTTCCATGCCAC
TCCTTCCACGAGCGCACGTTGGATACCAAAATTGCATATCGCAACATCGC
AGTCGCCAAGCAAAAGTGTGGTTTATTTGCTGACGGCATGGTAAGAAATG
ATGTGACGGTGCTGCTGACCTCCGCACGCACTCACCTTCAAACGCATATG
TGGTGAATATCTAAGGAAAGCAGGCATGCGAAATACCGCTAGGGGAATGT
GGCAAAACGCCCGACCAGAAAGGCTTAACTGAGGCTGTTTTTGTGTCGTA
TTTCCGGCTTGCGTCGTTGGCAGGTTCTTGCTGGCGCTGCTGACTTGCGG
GAGTATGATGGTGGTGACCCTCCACCGTTACTTGCGCCGCTACGAAAGTC
TGGTGGCGGGCACGAACAGGTGATGTAATGTTTTGGTTGGTCACGAGCAG
AAGCTGTGGTGCGCCAGAAAAACACCAAGCGGTCGCTTAAGCGTTTTTCG
TGACGCTCGTTTGCCCGCACATTTCCGTACCACACTGTGTTGTCGCCATT
TCTTGGCGTGGTCCCCTGCCTCTTTCTGGCGCCCGAGACCGGACCATTGG
CGGTGTTTCGTGCGCTGCAGCCTTCGGCATGGCTGGTTCTGTCTTCAACG
TGGACAGACTATTTCGACAGTGCCTAATTCAACCGTCACATTTGACAGAC
GATCAACCATGCCGCTCAGATCCGACGAGCGAGCTAGGCACAAATTAGTC
GCGTACATAAGGCCTCAGATACATGCCCTTTCCGCATGTTGCCAAGGCGC
GCGCACAATGCCCGCCCCGGTGTCCCGTCGGCAGCAAAACGGGGCGATGA
GCACTCCCCACCTTCGGAGGGGTGAAAGGCCGCAGGAAGTTATCAGTTGT
ATTTTTTACACAAGTTTTGCGGAGATCGAAACTATGTGCCAAATTGAAGG
TGGCCAAATGAATTGGTTGTTCGAATGGATACGATCCGTGGCGAAAGTGT
GCGATAGACTGACCAGTGTGACCCATCGATCGTTGTGATCTTTGCGACGT
ACGATGCGTATCTTTCGCTATGTTGCCTCGATCGATGACCTGACCAGGCG
GCCTCCGTAACATGCGATGCCGTTATCAGGCCAATGTCTTTGCCCGAGGT
GCTGCAACTGCCAGAAGTTCGCGTGGAGGAGGGGTCTCGCCTTGAAGGAG
ACTCATGTCCTGTGTGCTTGGAGGCGTACCGAATAGGGGACAAGGTGAGA
TTTTCCCTGGGTGTAAGTGACGGAGTAGGTGGGGGGTGGTACCGCTCTCG
ACGGCGATATGTTGTTGTTCGTGGGCATCTCTACTGCTGGTTTGCCTTTC
ATTTGGCTCATCTCGGCCGCGTACACCTCCAAAGGCACCACTCTGTGATC
ATACTCCAAGTCAGCACGTTCTTGTGGTTTCTTGTCCATCACCTCGCCTC
CCCCCCCCCCCTCCCTTCCTGTATTGGAGGTGTTGACTGAGAGAACCAAG
GAAAGTCGATCCCCTTCCGAACGTGTCGAGCAACTACTTCAAGCAACAAA
CGTGTACCCCCCCCCCCCACCCGTGCGAACGTATCCTCAGCTGCGAAGCC
TCCCCTGCCAGCACGCGTTCCACGCGGGGTGCATCACGCCTTGGCTCACC
CAGCGTCAAAGAAGCTGCCCCATGTGCAAAGACCCGGTGACTCTGACGGT
AGGGCTGGCTCCTCCTACAAGTAGCTCCCCCTCATCTTCATCTGCTTCTT
CGGCCGCCCCTGCGGCCGTGATTACCGCACCGGCGATGCAAGCTGCGCAC
GCAGACGGCGGGGAGAGGGGGGACAACGGTGCCGGGGGCGACCGGTTGCC
GCTGTTGTCGAATTCGAGGGGGGCGCCTATTGGAGGGGGGTCAATTCAAG
ACACCTCTCCGGTGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig133:28280..33696-

>mRNA_E-siliculosus-1a_F_contig133.1994.1 ID=mRNA_E-siliculosus-1a_F_contig133.1994.1|Name=mRNA_E-siliculosus-1a_F_contig133.1994.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2742bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig133:28280..33696- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGACCACCACATCGCAACACACGTTACGGCGAGATGGCATCCTTTGGAAA
GCAGCGGCAATGGGGGTTGTTGAGATTCATTTTAGCCATGGCCGTTGGCA
GCATTGACCTGGGCGCAGCCGTAATACTGGTGTACAACGAGGGCACGACG
CGGTTCGATGATGTGCCGTCGATGGACAACTTCGGTCCGAGAATACCTGA
AGAGCGACCACCACATCGCAACACACGTTACGGCGAGATGGCATCCTTTG
GAAAGCAGCGGCAATGGGGGTTGTTGAGATTCATTTTAGCCATGGCCGTT
GGCAGCATTGACCTGGGCGCAGCCGTAATACTGGTGTACAACGAGGGCAC
GACGCGGTTCGATGATGTGCCGTCGATGGACAACTTCGGTCCGAGAATAC
CTGAAGAGGGATTCGCAGGACGGCTCCAACTAGCGCAACCGAACGTGTAC
GCCTGTTCCGCCATCAGCGGGCCAACATCCACCACAGCAGTAGCGGCAGC
AGCAGCCGCTAAAGAGGCAGCGGGCGAATTAGATTTTGGAGGCGCCACTC
CACCATCAAGGACCCGCGCACACGGCGGGGTAAGCCGCGGCATGCCACTG
GCAGTATCGCGGCAACCCCCTCGCGGCGAGATCTTGGAGGCGGCTTCGAC
GACAGCGGCGGCGACGGAGCCGGCGGCAGCTGGAGAGGAAGATCTTCCTT
CGGCTGCGCTCATCTCGAGGTCGGAGAAGGATGACCCTAATGGGTGCACC
TTCGAGACCAAGGGATTCGCAGGACGGCTCCAACTAGCGCAACCGAACGT
GTACGCCTGTTCCGCCATCAGCGGGCCAACATCCACCACAGCAGTAGCGG
CAGCAGCAGCCGCTAAAGAGGCAGCGGGCGAATTAGATTTTGGAGGCGCC
ACTCCACCATCAAGGACCCGCGCACACGGCGGGGTAAGCCGCGGCATGCC
ACTGGCAGTATCGCGGCAACCCCCTCGCGGCGAGATCTTGGAGGCGGCTT
CGACGACAGCGGCGGCGACGGAGCCGGCGGCAGCTGGAGAGGAAGATCTT
CCTTCGGCTGCGCTCATCTCGAGGTCGGAGAAGGATGACCCTAATGGGTG
CACCTTCGAGACCAAGGTCCTTAACGCGCAGGCTGCGGGGTTCAGCATGG
TGATCGTGTACGACTCTCGACAGGAGAACCTGTTCAAGATGGGCAGAAGC
TCCGCCAAGGGGGGCAAGCATCCGCAGGTCGAGATACCGTTGGTCCTTAA
CGCGCAGGCTGCGGGGTTCAGCATGGTGATCGTGTACGACTCTCGACAGG
AGAACCTGTTCAAGATGGGCAGAAGCTCCGCCAAGGGGGGCAAGCATCCG
CAGGTCGAGATACCGTTGGTGTTGGTTACGCATGCGTCTGGCCTGGCTTT
GAAGGCGTTGATCGCGACTACGTCTGACACCCGCGGACCAGAGGTGTACG
TGGACAACACAGACCCCTTCGGCATGTTTGTGACGGTCGATCTCACCATG
TTCATGCTTGTCACCGGGTGTTGGTTACGCATGCGTCTGGCCTGGCTTTG
AAGGCGTTGATCGCGACTACGTCTGACACCCGCGGACCAGAGGTGTACGT
GGACAACACAGACCCCTTCGGCATGTTTGTGACGGTCGATCTCACCATGT
TCATGCTTGTCACCGGGTTCTTGCTGGCGCTGCTGACTTGCGGGAGTATG
ATGGTGGTGACCCTCCACCGTTACTTGCGCCGCTACGAAAGTCTGGTGGC
GGGCACGAACAGGTTCTTGCTGGCGCTGCTGACTTGCGGGAGTATGATGG
TGGTGACCCTCCACCGTTACTTGCGCCGCTACGAAAGTCTGGTGGCGGGC
ACGAACAGGCCAATGTCTTTGCCCGAGGTGCTGCAACTGCCAGAAGTTCG
CGTGGAGGAGGGGTCTCGCCTTGAAGGAGACTCATGTCCTGTGTGCTTGG
AGGCGTACCGAATAGGGGACAAGGCCAATGTCTTTGCCCGAGGTGCTGCA
ACTGCCAGAAGTTCGCGTGGAGGAGGGGTCTCGCCTTGAAGGAGACTCAT
GTCCTGTGTGCTTGGAGGCGTACCGAATAGGGGACAAGCTGCGAAGCCTC
CCCTGCCAGCACGCGTTCCACGCGGGGTGCATCACGCCTTGGCTCACCCA
GCGTCAAAGAAGCTGCCCCATGTGCAAAGACCCGGTGACTCTGACGGTAG
GGCTGGCTCCTCCTACAAGTAGCTCCCCCTCATCTTCATCTGCTTCTTCG
GCCGCCCCTGCGGCCGTGATTACCGCACCGGCGATGCAAGCTGCGCACGC
AGACGGCGGGGAGAGGGGGGACAACGGTGCCGGGGGCGACCGGTTGCCGC
TGTTGTCGAATTCGAGGGGGGCGCCTATTGGAGGGGGGTCAATTCAAGAC
ACCTCTCCGGTGTAGCTGCGAAGCCTCCCCTGCCAGCACGCGTTCCACGC
GGGGTGCATCACGCCTTGGCTCACCCAGCGTCAAAGAAGCTGCCCCATGT
GCAAAGACCCGGTGACTCTGACGGTAGGGCTGGCTCCTCCTACAAGTAGC
TCCCCCTCATCTTCATCTGCTTCTTCGGCCGCCCCTGCGGCCGTGATTAC
CGCACCGGCGATGCAAGCTGCGCACGCAGACGGCGGGGAGAGGGGGGACA
ACGGTGCCGGGGGCGACCGGTTGCCGCTGTTGTCGAATTCGAGGGGGGCG
CCTATTGGAGGGGGGTCAATTCAAGACACCTCTCCGGTGTAG
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