mRNA_E-siliculosus-1a_F_contig13104.1898.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13104.1898.1
Unique NamemRNA_E-siliculosus-1a_F_contig13104.1898.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13104.1898.1 vs. uniprot
Match: A0A7S0J643_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J643_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.420e-8
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 VEAADENGTTPLMFACRGGHVLAFSQLLEAGANPVA-CTSKGSTPLHFAASAG 156
            V AAD++G +PL  AC GGH     +LL+AGA P A C  KG TP+HFA + G
Sbjct:   55 VNAADDDGLSPLHLACVGGHAAVAKELLDAGALPTARCAPKGWTPVHFATAVG 107
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BLAST of mRNA_E-siliculosus-1a_F_contig13104.1898.1 vs. uniprot
Match: A0A835EG38_9POAL (Uncharacterized protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835EG38_9POAL)

HSP 1 Score: 52.8 bits (125), Expect = 1.550e-6
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 VEAADENGTTPLMFACRGGHVLAFSQLLEAGANPVACTSKGSTPLHFAASAG 156
            V AADE+G TPL++A RG  V     LL+ GANP      GSTPLH AA+ G
Sbjct:  400 VNAADESGETPLVYAVRGDTVDTVQYLLDHGANPDKHDGNGSTPLHLAAAGG 451
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BLAST of mRNA_E-siliculosus-1a_F_contig13104.1898.1 vs. uniprot
Match: A0A2B7XTM4_9EURO (TKL protein kinase n=1 Tax=Polytolypa hystricis UAMH7299 TaxID=1447883 RepID=A0A2B7XTM4_9EURO)

HSP 1 Score: 49.7 bits (117), Expect = 1.910e-5
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   13 DENGTTPLMFACRGGHVLAFSQLLEAGANPVACTSKGSTPLHF 141
            DE+ TTPL+ ACR GH+    QL+ +GANP      G TPLH+
Sbjct:  630 DEDSTTPLLCACRAGHLEVAEQLVASGANPSTANLIGETPLHW 672
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BLAST of mRNA_E-siliculosus-1a_F_contig13104.1898.1 vs. uniprot
Match: UPI00158DC63B (ankyrin-1-like n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158DC63B)

HSP 1 Score: 49.3 bits (116), Expect = 2.610e-5
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    1 VEAADENGTTPLMFACRGGHVLAFSQLLEAGANPVACTSKGSTPLHF 141
            +EAADE G TPL+ AC  G+V+A   LL+  ANP      G TPLHF
Sbjct:  554 IEAADEEGRTPLIEACIYGNVVAVKVLLDNHANPNVTNHCGQTPLHF 600
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13104.1898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S0J643_9EUKA1.420e-852.83Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A835EG38_9POAL1.550e-653.85Uncharacterized protein n=1 Tax=Digitaria exilis T... [more]
A0A2B7XTM4_9EURO1.910e-551.16TKL protein kinase n=1 Tax=Polytolypa hystricis UA... [more]
UPI00158DC63B2.610e-553.19ankyrin-1-like n=1 Tax=Chelonus insularis TaxID=46... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13104contigE-siliculosus-1a_F_contig13104:1144..1314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size171
Model size171
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927834.2511704-CDS-E-siliculosus-1a_F_contig13104:1143..13141622927834.2511704-CDS-E-siliculosus-1a_F_contig13104:1143..1314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13104 1144..1314 -
1696318700.0636382-CDS-E-siliculosus-1a_F_contig13104:1143..13141696318700.0636382-CDS-E-siliculosus-1a_F_contig13104:1143..1314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13104 1144..1314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13104.1898.1prot_E-siliculosus-1a_F_contig13104.1898.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13104 1144..1314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13104.1898.1

>prot_E-siliculosus-1a_F_contig13104.1898.1 ID=prot_E-siliculosus-1a_F_contig13104.1898.1|Name=mRNA_E-siliculosus-1a_F_contig13104.1898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=57bp
VEAADENGTTPLMFACRGGHVLAFSQLLEAGANPVACTSKGSTPLHFAAS
AGCPPVN
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mRNA from alignment at E-siliculosus-1a_F_contig13104:1144..1314-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13104.1898.1 ID=mRNA_E-siliculosus-1a_F_contig13104.1898.1|Name=mRNA_E-siliculosus-1a_F_contig13104.1898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=171bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13104:1144..1314- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTAGAGGCGGCCGACGAGAACGGCACGACGCCCTTGATGTTCGCCTGCCG
CGGCGGCCACGTCCTGGCGTTCTCCCAGCTGCTGGAGGCAGGGGCGAACC
CCGTGGCATGCACGTCCAAGGGCTCCACCCCGCTCCATTTCGCTGCGTCC
GCGGGCTGTCCCCCGGTAAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13104:1144..1314-

>mRNA_E-siliculosus-1a_F_contig13104.1898.1 ID=mRNA_E-siliculosus-1a_F_contig13104.1898.1|Name=mRNA_E-siliculosus-1a_F_contig13104.1898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13104:1144..1314- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTAGAGGCGGCCGACGAGAACGGCACGACGCCCTTGATGTTCGCCTGCCG
CGGCGGCCACGTCCTGGCGTTCTCCCAGCTGCTGGAGGCAGGGGCGAACC
CCGTGGCATGCACGTCCAAGGGCTCCACCCCGCTCCATTTCGCTGCGTCC
GCGGGCTGTCCCCCGGTAAACGTAGAGGCGGCCGACGAGAACGGCACGAC
GCCCTTGATGTTCGCCTGCCGCGGCGGCCACGTCCTGGCGTTCTCCCAGC
TGCTGGAGGCAGGGGCGAACCCCGTGGCATGCACGTCCAAGGGCTCCACC
CCGCTCCATTTCGCTGCGTCCGCGGGCTGTCCCCCGGTAAAC
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