mRNA_E-siliculosus-1a_F_contig1309.1878.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1309.1878.1
Unique NamemRNA_E-siliculosus-1a_F_contig1309.1878.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1309.1878.1 vs. uniprot
Match: D8LGK4_ECTSI (alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK4_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 2.550e-62
Identity = 116/129 (89.92%), Postives = 118/129 (91.47%), Query Frame = 1 
Query:    1 AFEKHCRLPVAFGSFPNVNDPSRQPEDRMESFFLAETLKYLYLIQDPDQKSVRV-----VLSVSRVVCGVASTLAIIIRRLTIRFEGLLCLFRLRLGAIKFRTCPMRDGLARLTPSISDIPRSGRALLR 372
            AFEKHCRLPVAFGSFPNVNDP+RQPEDRMESFFLAETLKYLYLIQDPDQK  R      VLSVSRVVCGVASTLAII RRLTIR  GLLCLFRLRLGAI+FRTCPMRDGLARLTPSISDIPRSGRALLR
Sbjct:  810 AFEKHCRLPVAFGSFPNVNDPNRQPEDRMESFFLAETLKYLYLIQDPDQKERRACCCLFVLSVSRVVCGVASTLAII-RRLTIR-HGLLCLFRLRLGAIEFRTCPMRDGLARLTPSISDIPRSGRALLR 936
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BLAST of mRNA_E-siliculosus-1a_F_contig1309.1878.1 vs. uniprot
Match: A0A7S3XK61_HETAK (alpha-1,2-Mannosidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK61_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 6.890e-15
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 AFEKHCRLPVAFGSFPNVNDPSRQPEDRMESFFLAETLKYLYLIQDPDQ 147
            A EKHCR  +A+G+ P+V +  R+P+DRMESFFLAET KYLYLIQDPDQ
Sbjct:  549 AIEKHCRTSIAYGAHPDVRNTGRKPDDRMESFFLAETFKYLYLIQDPDQ 597
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BLAST of mRNA_E-siliculosus-1a_F_contig1309.1878.1 vs. uniprot
Match: A0A7S2A036_TRICV (alpha-1,2-Mannosidase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A036_TRICV)

HSP 1 Score: 71.6 bits (174), Expect = 8.720e-14
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 AFEKHCRLPVAFGSFPNVNDPSRQPEDRMESFFLAETLKYLYLIQDPD 144
            A E++C+   A+GS PNVN+ +R  +D+MESFFLAETLKYLYL+QDPD
Sbjct:   33 AIERYCKTDFAYGSPPNVNNVNRDVDDKMESFFLAETLKYLYLLQDPD 80
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BLAST of mRNA_E-siliculosus-1a_F_contig1309.1878.1 vs. uniprot
Match: A0A7R9VYC4_9STRA (alpha-1,2-Mannosidase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VYC4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.120e-13
Identity = 29/50 (58.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 AFEKHCRLPVAFGSFPNVNDPSRQPEDRMESFFLAETLKYLYLIQDPDQK 150
            + +++C++ VA+GS  +VN P  +P D+MESFFLAETLKYLYL+QDPD +
Sbjct:   43 SIQRYCKMDVAYGSIRDVNRPEERPTDKMESFFLAETLKYLYLLQDPDSE 92
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BLAST of mRNA_E-siliculosus-1a_F_contig1309.1878.1 vs. uniprot
Match: A0A7S0AP19_9STRA (alpha-1,2-Mannosidase n=2 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AP19_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.990e-13
Identity = 29/48 (60.42%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 AFEKHCRLPVAFGSFPNVNDPSRQPEDRMESFFLAETLKYLYLIQDPD 144
            + E++C+  +A+GS  +V + ++QPEDRMESFFLAET+KYLYL+QDPD
Sbjct:  112 SIERYCKTKIAYGSLKDVRNTNQQPEDRMESFFLAETIKYLYLLQDPD 159
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BLAST of mRNA_E-siliculosus-1a_F_contig1309.1878.1 vs. uniprot
Match: A0A7S2KLB8_9STRA (alpha-1,2-Mannosidase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KLB8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.010e-13
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 AFEKHCRLPVAFGSFPNVNDPSRQPEDRMESFFLAETLKYLYLIQDPD 144
            AFEKH R    + S PNVN   R+P+D+MESFF+AETLKYLYL+QDPD
Sbjct:  401 AFEKHSRTSAGYASIPNVNSVFREPKDQMESFFIAETLKYLYLLQDPD 448
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BLAST of mRNA_E-siliculosus-1a_F_contig1309.1878.1 vs. uniprot
Match: A0A7S4N8K7_9STRA (alpha-1,2-Mannosidase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8K7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.080e-13
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 AFEKHCRLPVAFGSFPNVNDPSRQPEDRMESFFLAETLKYLYLIQDPD 144
            + E++CR  +A+GS  NVN+P   PEDRMESFFLAET+KYLYL+ DPD
Sbjct:  449 SIERYCRTDIAYGSLTNVNNPGAAPEDRMESFFLAETIKYLYLLFDPD 496
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BLAST of mRNA_E-siliculosus-1a_F_contig1309.1878.1 vs. uniprot
Match: A0A7S4K3S5_9STRA (alpha-1,2-Mannosidase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K3S5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.630e-13
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 AFEKHCRLPVAFGSFPNVNDPSRQPEDRMESFFLAETLKYLYLIQDPD 144
            + E++CR  +A+GS  NVN P+ +P D+MESFFLAETLKYLYL+QDPD
Sbjct:  487 SIERYCRTDIAYGSLQNVNKPNDRPMDKMESFFLAETLKYLYLLQDPD 534
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BLAST of mRNA_E-siliculosus-1a_F_contig1309.1878.1 vs. uniprot
Match: A0A7S2PJG9_9STRA (alpha-1,2-Mannosidase n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PJG9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.560e-12
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 AFEKHCRLPVAFGSFPNVNDPSRQPEDRMESFFLAETLKYLYLIQDPDQK 150
            + EK+C+    +GS  +VN+PS +PEDRMESFFLAETLKYLYL+ DPD +
Sbjct:  669 SIEKYCKTEYGYGSLHDVNEPSMKPEDRMESFFLAETLKYLYLLFDPDSE 718
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BLAST of mRNA_E-siliculosus-1a_F_contig1309.1878.1 vs. uniprot
Match: A0A6U2WRQ7_9STRA (alpha-1,2-Mannosidase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U2WRQ7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 8.360e-12
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 AFEKHCRLPVAFGSFPNVNDPSRQPEDRMESFFLAETLKYLYLIQDPD 144
            A EK+C+  +A+GS  NV D + +P ++MESFFLAETLKYLYL+QDPD
Sbjct:  251 AIEKYCKTHIAYGSLGNVQDTNGKPRNKMESFFLAETLKYLYLLQDPD 298
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK4_ECTSI2.550e-6289.92alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S3XK61_HETAK6.890e-1569.39alpha-1,2-Mannosidase n=1 Tax=Heterosigma akashiwo... [more]
A0A7S2A036_TRICV8.720e-1464.58alpha-1,2-Mannosidase n=1 Tax=Trieres chinensis Ta... [more]
A0A7R9VYC4_9STRA1.120e-1358.00alpha-1,2-Mannosidase n=1 Tax=Pseudictyota dubia T... [more]
A0A7S0AP19_9STRA3.990e-1360.42alpha-1,2-Mannosidase n=2 Tax=Minutocellus polymor... [more]
A0A7S2KLB8_9STRA7.010e-1366.67alpha-1,2-Mannosidase n=1 Tax=Leptocylindrus danic... [more]
A0A7S4N8K7_9STRA7.080e-1364.58alpha-1,2-Mannosidase n=1 Tax=Odontella aurita Tax... [more]
A0A7S4K3S5_9STRA7.630e-1364.58alpha-1,2-Mannosidase n=1 Tax=Odontella aurita Tax... [more]
A0A7S2PJG9_9STRA2.560e-1262.00alpha-1,2-Mannosidase n=2 Tax=Skeletonema marinoi ... [more]
A0A6U2WRQ7_9STRA8.360e-1262.50alpha-1,2-Mannosidase n=1 Tax=Amphiprora paludosa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1309contigE-siliculosus-1a_F_contig1309:26369..27769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size375
Model size375
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
CAZyGH47
COG Functional cat.G
EC3.2.1.113
EggNOG OGsKOG2204@1,KOG2204@2759
EggNOG free text desc.mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007585,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030173,GO:0030323,GO:0030324,GO:0030433,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034645,GO:0034976,GO:0035010,GO:0035295,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048286,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0060541,GO:0070085,GO:0071704,GO:0072347,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1904381
KEGG ModuleM00073,M00074
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ReactionR05982,R06722
KEGG koko:K01230
Preferred nameMAN1A2
Seed eggNOG ortholog2880.D8LGK4
Seed ortholog evalue1.6e-53
Seed ortholog score215.3
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927830.9827392-CDS-E-siliculosus-1a_F_contig1309:26368..265931622927830.9827392-CDS-E-siliculosus-1a_F_contig1309:26368..26593Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 26369..26593 -
1696318698.4588902-CDS-E-siliculosus-1a_F_contig1309:26368..265931696318698.4588902-CDS-E-siliculosus-1a_F_contig1309:26368..26593Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 26369..26593 -
1622927831.0020843-CDS-E-siliculosus-1a_F_contig1309:27619..277691622927831.0020843-CDS-E-siliculosus-1a_F_contig1309:27619..27769Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 27620..27769 -
1696318698.4727435-CDS-E-siliculosus-1a_F_contig1309:27619..277691696318698.4727435-CDS-E-siliculosus-1a_F_contig1309:27619..27769Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 27620..27769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1309.1878.1prot_E-siliculosus-1a_F_contig1309.1878.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1309 26369..27769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1309.1878.1

>prot_E-siliculosus-1a_F_contig1309.1878.1 ID=prot_E-siliculosus-1a_F_contig1309.1878.1|Name=mRNA_E-siliculosus-1a_F_contig1309.1878.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=125bp
AFEKHCRLPVAFGSFPNVNDPSRQPEDRMESFFLAETLKYLYLIQDPDQK
SVRVVLSVSRVVCGVASTLAIIIRRLTIRFEGLLCLFRLRLGAIKFRTCP
MRDGLARLTPSISDIPRSGRALLR*
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mRNA from alignment at E-siliculosus-1a_F_contig1309:26369..27769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1309.1878.1 ID=mRNA_E-siliculosus-1a_F_contig1309.1878.1|Name=mRNA_E-siliculosus-1a_F_contig1309.1878.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1401bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1309:26369..27769- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGTTCGAGAAGCACTGCCGATTGCCCGTGGCTTTCGGGTCCTTCCCCAA
CGTGAACGACCCCAGTAGGCAGCCGGAGGACAGGATGGAGTCCTTCTTCT
TGGCGGAGACTCTCAAGTACCTCTACCTCATTCAAGACCCAGATCAAAAG
GTACGCTATTTTGGTTCGGATCCGCGCTGTTGTTGTTGTCGTCGTCGTTG
TCGTCGTCGTCGTCGTCGTCGTTGTTGTTGTCGTTGTCGTTGTCGTCGTC
GTCGTTGTCGTTGTCGTTGTCGTCGTCGTCGTTGTTGTTGTTGTTGTTGT
TACCACCAGCACGTCACGTTTGGCATGTTTTGGCGGTTTGCTACCCGAAG
ACGACGGAGCTTCACCATGCCGCGTTAACTCGATAGCAGTTGCCCTGCTG
CTGCAGATAGAAAGAAGCAAAAGCTATTTTATAGGTTCGGTACCCTTGTC
AGTGAGGCGCCTCTCCATCAAGGCATTTCGGCGAAAAACCGTCTTTGCAA
CGGAACGCGTGTTTTGGCGTTAGAGGCGTAGAGCCAGGGGGTGGGGAAGA
AAGTCAACACAACACCCGCTGAGCAACCTACATAGAAATACCCTGGGGCG
TTGACTACCTACTATTGTAGTACTCTTTTTGACGCCAATCTTGTACCTGG
TACCAGCTTTCCCAATTTGTTGTGTCGATGTCATGTTGTGAGATGCTCCC
TCTGGTGCCCTCTCCCCCCTGACGCTTGTAGTACGCCCCCCCCCCCCCCC
CCCCTAATGCTTGTTCGTGTGCTAAATAGGTGGACCTCAGCAAGTATGTG
TTCAACACGGAGGCGCACCCGTTGCAAATGTTCGACGACATGGAGCGGAA
GCCGCAGGGCCTTCGAGGGAACGACCCCATGGCAGCTATGTGGGCCGCAA
GGCAATGACGTCGACAACGGACGGCATTTTTTGGCCTAAGCCAACCGCAG
CATGTAGTGAAGCATGGTAAAAGTAGGGGGTACTCATGTGTTTTCAATGC
CCTAGCGGGTAGACTATTGACCACGCGTCCTCGAGAGGGCGGAGCATTGT
TCCCACGGGACCGATGGGCAATCGTTCCTTCCTACTCTGCCGAAGGTGGC
TCGAGAATGTTTAAGAGGCGTAGGGGGCGTTAGGATTGGGGAGTTTGTGA
TGTTGTGTTGAATTTTTGTCAGGAAGAGCGTGCGTGTTGTTTTGTCTGTC
TCTCGTGTTGTGTGTGGCGTGGCTTCGACGCTGGCAATCATCATTCGTAG
GCTTACGATTCGATTTGAGGGGTTGCTTTGTTTGTTCCGGCTCAGGTTGG
GTGCCATTAAGTTCCGTACTTGCCCGATGCGAGATGGCTTGGCAAGACTC
ACGCCAAGCATATCAGATATACCGAGGAGTGGCAGAGCGCTTTTGAGGTG
A
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1309:26369..27769-

>mRNA_E-siliculosus-1a_F_contig1309.1878.1 ID=mRNA_E-siliculosus-1a_F_contig1309.1878.1|Name=mRNA_E-siliculosus-1a_F_contig1309.1878.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=750bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1309:26369..27769- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGTTCGAGAAGCACTGCCGATTGCCCGTGGCTTTCGGGTCCTTCCCCAA
CGTGAACGACCCCAGTAGGCAGCCGGAGGACAGGATGGAGTCCTTCTTCT
TGGCGGAGACTCTCAAGTACCTCTACCTCATTCAAGACCCAGATCAAAAG
GCGTTCGAGAAGCACTGCCGATTGCCCGTGGCTTTCGGGTCCTTCCCCAA
CGTGAACGACCCCAGTAGGCAGCCGGAGGACAGGATGGAGTCCTTCTTCT
TGGCGGAGACTCTCAAGTACCTCTACCTCATTCAAGACCCAGATCAAAAG
AGCGTGCGTGTTGTTTTGTCTGTCTCTCGTGTTGTGTGTGGCGTGGCTTC
GACGCTGGCAATCATCATTCGTAGGCTTACGATTCGATTTGAGGGGTTGC
TTTGTTTGTTCCGGCTCAGGTTGGGTGCCATTAAGTTCCGTACTTGCCCG
ATGCGAGATGGCTTGGCAAGACTCACGCCAAGCATATCAGATATACCGAG
GAGTGGCAGAGCGCTTTTGAGGTGAAGCGTGCGTGTTGTTTTGTCTGTCT
CTCGTGTTGTGTGTGGCGTGGCTTCGACGCTGGCAATCATCATTCGTAGG
CTTACGATTCGATTTGAGGGGTTGCTTTGTTTGTTCCGGCTCAGGTTGGG
TGCCATTAAGTTCCGTACTTGCCCGATGCGAGATGGCTTGGCAAGACTCA
CGCCAAGCATATCAGATATACCGAGGAGTGGCAGAGCGCTTTTGAGGTGA
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