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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1308.1872.1 vs. uniprot
Match: D7FIC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC8_ECTSI) HSP 1 Score: 519 bits (1336), Expect = 6.420e-183 Identity = 263/303 (86.80%), Postives = 276/303 (91.09%), Query Frame = 1
Query: 79 MGVEDGQQGDRDDRQSGPYCQVTIRTLRARTSGAAFISSSEATTDQGEGDVLLFVERELLVRSYNSVSLSDDGAYSLTLSDCYGFTPTTMSAPARRVSSASWRSRNHDGADAERCGRQTAEIVRLLFLPLPSSMEFEVNSGQATRGGAVIGNFHLLPVAHVPQLQHAPVFSSETTTTSPFIRTVGHADYTPGVPVLHEPSRAYFTSATAAA-DSFCDRGEMDCTGEGPGVDEGTALSSIGGGFAGGIAVGVVFSLLLVLTVFRGGWGKDFLEHFWTLIKGDGDAGMRKSGWRGFIVSIGGEKK 984
MGVED QQ RDDRQ GPYCQV IRTLRARTSGAAFISSSEATTDQGEG LLFVERELLVRSYNSVSLSDDG YSLTLSDCYGF P T S+PARRVSSASWRSRNHDGADA R RQTAEIVR+LFLPLPSSMEF VNSGQAT G VIGNFHLLPVAHVPQLQHAPVF++ETTTTSP IRTVGHA YTPGVPVLHEPSRAYF+S TAAA DS C+RGEM C GEGPGVDEGTALSS+GGGFAGG+AVGVVFSLLLVL +FRGG GKDF+E+FWTL+KGDGDAGMRKSGWRGFIVS+GGEKK
Sbjct: 1 MGVEDDQQAARDDRQRGPYCQVAIRTLRARTSGAAFISSSEATTDQGEGGDLLFVERELLVRSYNSVSLSDDGTYSLTLSDCYGFMPITTSSPARRVSSASWRSRNHDGADAGRRERQTAEIVRILFLPLPSSMEFVVNSGQATSSGTVIGNFHLLPVAHVPQLQHAPVFNAETTTTSPDIRTVGHAAYTPGVPVLHEPSRAYFSSTTAAAADSLCERGEMGCIGEGPGVDEGTALSSVGGGFAGGVAVGVVFSLLLVLIIFRGGRGKDFMENFWTLLKGDGDAGMRKSGWRGFIVSVGGEKK 303
BLAST of mRNA_E-siliculosus-1a_F_contig1308.1872.1 vs. uniprot
Match: A0A6H5JS72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS72_9PHAE) HSP 1 Score: 496 bits (1277), Expect = 7.380e-173 Identity = 256/328 (78.05%), Postives = 274/328 (83.54%), Query Frame = 1
Query: 1 MPATSVATGGASRVFSATWPPYTPASMGVEDGQQGDRDDRQSGPYCQVTIRTLRARTSGAAFISSSEATTDQGEGDVLLFVERELLVRSYNSVSLSDDGAYSLTLSDCYGFTPTTMSAPARRVSSASWRSRNHDGADAERCGRQTAEIVRLLFLPLPSSMEFEVNSGQATRGGAVIGNFHLLPVAHVPQLQHAPVFSSETTTTSPFIRTVGHADYTPGVPVLHEPSRAYFTSATAAADSFCDRGEMDCTGEGPGVDEGTALSSIGGGFAGGIAVGVVFSLLLVLTVFRGGWGKDFLEHFWTLIKGDGDAGMRKSGWRGFIVSIGGEKK 984
MPATSVATGGASRVF+ATWPPYTPAS ED QQ DRDDR+SGPYCQV IRTLRARTSGAAFISSSEATT GEG LLFV+ LL+RSYNSVSLSDDGAYSLTLSDC+GF P S+P R SS WRSRNHDG A R Q AEI RLLFLPLPSS++FEVN QAT GA+IGNFHLLPVAHVPQLQHAPVF++ET+TTSP IRTVGHADYTPGVPVL E SRAYF+SA AAAD+ CDR +M CTGEGPGV EGTA SSIGGGF SLLLVL VFRGGWGKDFLE+FWTL+KGDGDAGM+KSGW GFIVSIGGEKK
Sbjct: 31 MPATSVATGGASRVFTATWPPYTPASTRGEDHQQADRDDRESGPYCQVAIRTLRARTSGAAFISSSEATTGHGEGGDLLFVQPGLLLRSYNSVSLSDDGAYSLTLSDCHGFIPIATSSPDRPASSPPWRSRNHDGGAAGRPEWQMAEIGRLLFLPLPSSIDFEVNRRQATSSGAIIGNFHLLPVAHVPQLQHAPVFNTETSTTSPGIRTVGHADYTPGVPVLQESSRAYFSSAMAAADTLCDREKMACTGEGPGVGEGTAPSSIGGGFTXXXXXXXXXSLLLVLVVFRGGWGKDFLENFWTLLKGDGDAGMKKSGWGGFIVSIGGEKK 358
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1104 |
| Model size | 1104 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1308.1872.1 >prot_E-siliculosus-1a_F_contig1308.1872.1 ID=prot_E-siliculosus-1a_F_contig1308.1872.1|Name=mRNA_E-siliculosus-1a_F_contig1308.1872.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=368bp
MPATSVATGGASRVFSATWPPYTPASMGVEDGQQGDRDDRQSGPYCQVTI
RTLRARTSGAAFISSSEATTDQGEGDVLLFVERELLVRSYNSVSLSDDGA
YSLTLSDCYGFTPTTMSAPARRVSSASWRSRNHDGADAERCGRQTAEIVR
LLFLPLPSSMEFEVNSGQATRGGAVIGNFHLLPVAHVPQLQHAPVFSSET
TTTSPFIRTVGHADYTPGVPVLHEPSRAYFTSATAAADSFCDRGEMDCTG
EGPGVDEGTALSSIGGGFAGGIAVGVVFSLLLVLTVFRGGWGKDFLEHFW
TLIKGDGDAGMRKSGWRGFIVSIGGEKKVSSCQSFEHTKMKAEIPPPYPP
QNPSIIPVSTRPVRFWT* back to topmRNA from alignment at E-siliculosus-1a_F_contig1308:20064..22965- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1308.1872.1 ID=mRNA_E-siliculosus-1a_F_contig1308.1872.1|Name=mRNA_E-siliculosus-1a_F_contig1308.1872.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2902bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1308:20064..22965- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTGCAACGTCCGTTGCGACCGGCGGCGCATCCAGAGTGTTTTCCGC
GACCTGGCCACCGTACACTCCAGCATCAATGGGTGTAGAGGATGGCCAGC
AAGGCGACAGGGACGACCGGCAGAGCGGTCCCTACTGTCAGGTTCGACTC
CTGCAGGAAACTTCCCAGCTGAGCCTTTTGCGTTTAGACCACGCATGCAT
CTGAAAGTGCATATGTAAATAGACAGTAGTAGTCTACATTAAGCAGCGGT
CTACACCATAGTCTCCGCGTTGGCATACACGTTGTGGGACCATTTTCTCT
CCGACGGCAACAGTGGGGAGTGGCTAACTTACGTCCTGGTTCACGTTCCT
GGTGTTTCCTGGGTGTCGGCAACAATGGCCAACCATCCTTGTAGAATGAG
ACAGACAGTGATCGGTGCTCAAACATGTATCGTGTCGGGCAGGCCCACGG
TCCCCTGAATTCCCCACCTGCGTTGTTCACTGTCGCGGCCGATTCCGCTG
TCAAAATCACTATCGTCGCCGCGCACTTTTACTCGCAGGTCACAATTCGG
ACCCTCCGTGCACGCACGAGCGGCGCTGCTTTCATTTCAAGTTCAGGTGA
GACGGAAATAATGCACATGTTGTCGCCGTGGTTGACGCTGGCACTTCCGA
GCTCACCACGCGTCGAATGCATCTACTACGCATACTATGTATGCACCCGC
AACATTTAGTCTTGCTTGTAAACAAGATGATTGAGACTCGATTCCCGCAG
TGAGGTACGTCATGCACAACCTACTAGAAGGCAAGACACGTGCTGGAATA
GTGTGCTGTATCGTCACTCCGTATTTCACTTTTGAAAACAGCTAGAGTTC
ATACTTAGGAACGAACATAGTTGTTGTTCACTCCGTGAGGGCATACGCTA
CCTACGGCAGAAGCCGACCGTAGTATGCATATGGCTGTTGCAAATGTCTA
TGACAAATAATTGCAGTATATTGGCTGCTGAGGGACGGTGTAATACTGCA
ATACTGTGAATATTTCCGCGCATTCTGGCTACAAACTCGGCCAACTGCAT
GTTGAGAACGTGGTTCGTTGCTACTGTAATCTTTCGTCTCGGTGTTGACT
TCAAAAGGGCGAGTAACATCGCGAGGCGCGTCCACCAAAGGCAACGAAGA
GAAGTTTCATATGTGCATCGGAACAACTTGTGAAATACATGTTCAGTCGA
GTTTCATTCAGTGAAGCCACAAGGCATCATTCACGGCTCCTTCGGGGACT
GAAACTGAGGCCAACCGGGGGACAGAAAATTTACATTTCAAACAAGCTAC
AAAGGACGGGTTGAATTCTTCAGTTTTATGCCAGTGTCTGATCGTGTCTT
ACCCGCAAGATTCAACCAATCGATCAAGCCTGTGCTCCTTCACGTGCACG
GTGTACCCTGTTACGTACGGATAAACCGGGCTCCACATAGCAGACGGACA
AATGAACAACAAGGTGTTAGAAGAACGGCTGTCTTTGACCAGAAAGTAGC
GTACGTACAGCTTTGTTTCCATCCTTCGTGGGCAGCATGCAATATTAAGT
GCTGTTGTAGCACACCAACATTCTCCCGGGCACGTGCTGATTGACGGCGT
ACAGAGGCCACCACCGACCAAGGCGAAGGCGATGTCCTTCTTTTTGTCGA
GCGCGAGCTGCTCGTGCGGAGCTACAACAGCGTCTCGCTTTCGGACGACG
GCGCCTATAGCTTGACGCTCTCAGACTGCTACGGATTCACGCCGACGACG
ATGTCTGCTCCTGCCAGACGAGTATCGAGTGCTTCTTGGCGGTCACGCAA
TCATGACGGGGCAGATGCCGAGAGGTGTGGACGACAAACGGCGGAGATTG
TTCGCCTATTGTTCCTTCCCCTGCCTTCATCGATGGAGTTCGAGGTGAAC
AGTGGCCAAGTGAGTATAGGGTAGGACCACTGCATCACCACCTCTGATTC
ACTCTCAGGGAATGAGTTCACTCGATGCGGAGTAGTGCCGTTCACGAAAA
ACATTGTTCAACTGATAGCGGCCACGGCGCGCCTCAGATTTGGGCATCGA
ATGCACGGTCGACGACTCCGGAGTGAATACATACATTGGATTGCGATCGA
TTTGTCATGTCTAGACCCGTACCCGCACGGGAAGGCCACGCACGTTGGCT
GGGATGCGTCCCCCGAGGTGGCCACTCCACCTGACGTAGCATATTTTCTC
TTATTTCGACGCCTTTGCCTCTAACCCCTCTTCTTCTCCCGCCACAATGG
CCTCGGGTGCGCCCCGTGCCGTTCCATTGACGGCAATTCGCGCATCACTA
AGGCGACAAGAGGTGGCGCCGTCATCGGCAACTTTCACCTTCTCCCGGTG
GCCCACGTGCCCCAGCTGCAGCACGCGCCCGTCTTCAGCTCAGAGACCAC
CACGACGTCCCCGTTTATCAGGACCGTCGGCCACGCCGACTACACGCCTG
GAGTCCCCGTTCTACATGAACCATCCCGCGCGTATTTCACCTCTGCGACG
GCGGCCGCGGATTCATTCTGTGACAGGGGAGAAATGGACTGCACCGGAGA
GGGGCCGGGAGTCGACGAAGGTACCGCGCTGTCTTCAATTGGAGGCGGCT
TCGCGGGGGGAATAGCGGTAGGGGTCGTTTTTTCTCTGCTGCTTGTCCTC
ACAGTCTTCAGAGGAGGATGGGGCAAGGACTTCTTGGAGCACTTCTGGAC
TCTGATCAAGGGCGACGGTGATGCAGGGATGAGAAAATCCGGGTGGAGGG
GTTTCATCGTCAGCATCGGGGGGGAGAAGAAGGTGTCGTCATGCCAAAGT
TTTGAACATACGAAAATGAAAGCTGAAATTCCGCCACCTTATCCTCCCCA
AAATCCAAGTATAATACCGGTGTCTACGCGCCCTGTGCGCTTCTGGACGT
AG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1308:20064..22965- >mRNA_E-siliculosus-1a_F_contig1308.1872.1 ID=mRNA_E-siliculosus-1a_F_contig1308.1872.1|Name=mRNA_E-siliculosus-1a_F_contig1308.1872.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2208bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1308:20064..22965- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTGCAACGTCCGTTGCGACCGGCGGCGCATCCAGAGTGTTTTCCGC
GACCTGGCCACCGTACACTCCAGCATCAATGGGTGTAGAGGATGGCCAGC
AAGGCGACAGGGACGACCGGCAGAGCGGTCCCTACTGTCAGATGCCTGCA
ACGTCCGTTGCGACCGGCGGCGCATCCAGAGTGTTTTCCGCGACCTGGCC
ACCGTACACTCCAGCATCAATGGGTGTAGAGGATGGCCAGCAAGGCGACA
GGGACGACCGGCAGAGCGGTCCCTACTGTCAGGTCACAATTCGGACCCTC
CGTGCACGCACGAGCGGCGCTGCTTTCATTTCAAGTTCAGGTCACAATTC
GGACCCTCCGTGCACGCACGAGCGGCGCTGCTTTCATTTCAAGTTCAGAG
GCCACCACCGACCAAGGCGAAGGCGATGTCCTTCTTTTTGTCGAGCGCGA
GCTGCTCGTGCGGAGCTACAACAGCGTCTCGCTTTCGGACGACGGCGCCT
ATAGCTTGACGCTCTCAGACTGCTACGGATTCACGCCGACGACGATGTCT
GCTCCTGCCAGACGAGTATCGAGTGCTTCTTGGCGGTCACGCAATCATGA
CGGGGCAGATGCCGAGAGGTGTGGACGACAAACGGCGGAGATTGTTCGCC
TATTGTTCCTTCCCCTGCCTTCATCGATGGAGTTCGAGGTGAACAGTGGC
CAAAGGCCACCACCGACCAAGGCGAAGGCGATGTCCTTCTTTTTGTCGAG
CGCGAGCTGCTCGTGCGGAGCTACAACAGCGTCTCGCTTTCGGACGACGG
CGCCTATAGCTTGACGCTCTCAGACTGCTACGGATTCACGCCGACGACGA
TGTCTGCTCCTGCCAGACGAGTATCGAGTGCTTCTTGGCGGTCACGCAAT
CATGACGGGGCAGATGCCGAGAGGTGTGGACGACAAACGGCGGAGATTGT
TCGCCTATTGTTCCTTCCCCTGCCTTCATCGATGGAGTTCGAGGTGAACA
GTGGCCAAGCGACAAGAGGTGGCGCCGTCATCGGCAACTTTCACCTTCTC
CCGGTGGCCCACGTGCCCCAGCTGCAGCACGCGCCCGTCTTCAGCTCAGA
GACCACCACGACGTCCCCGTTTATCAGGACCGTCGGCCACGCCGACTACA
CGCCTGGAGTCCCCGTTCTACATGAACCATCCCGCGCGTATTTCACCTCT
GCGACGGCGGCCGCGGATTCATTCTGTGACAGGGGAGAAATGGACTGCAC
CGGAGAGGGGCCGGGAGTCGACGAAGGTACCGCGCTGTCTTCAATTGGAG
GCGGCTTCGCGGGGGGAATAGCGGTAGGGGTCGTTTTTTCTCTGCTGCTT
GTCCTCACAGTCTTCAGAGGAGGATGGGGCAAGGACTTCTTGGAGCACTT
CTGGACTCTGATCAAGGGCGACGGTGATGCAGGGATGAGAAAATCCGGGT
GGAGGGGTTTCATCGTCAGCATCGGGGGGGAGAAGAAGGTGTCGTCATGC
CAAAGTTTTGAACATACGAAAATGAAAGCTGAAATTCCGCCACCTTATCC
TCCCCAAAATCCAAGTATAATACCGGTGTCTACGCGCCCTGTGCGCTTCT
GGACGTAGGCGACAAGAGGTGGCGCCGTCATCGGCAACTTTCACCTTCTC
CCGGTGGCCCACGTGCCCCAGCTGCAGCACGCGCCCGTCTTCAGCTCAGA
GACCACCACGACGTCCCCGTTTATCAGGACCGTCGGCCACGCCGACTACA
CGCCTGGAGTCCCCGTTCTACATGAACCATCCCGCGCGTATTTCACCTCT
GCGACGGCGGCCGCGGATTCATTCTGTGACAGGGGAGAAATGGACTGCAC
CGGAGAGGGGCCGGGAGTCGACGAAGGTACCGCGCTGTCTTCAATTGGAG
GCGGCTTCGCGGGGGGAATAGCGGTAGGGGTCGTTTTTTCTCTGCTGCTT
GTCCTCACAGTCTTCAGAGGAGGATGGGGCAAGGACTTCTTGGAGCACTT
CTGGACTCTGATCAAGGGCGACGGTGATGCAGGGATGAGAAAATCCGGGT
GGAGGGGTTTCATCGTCAGCATCGGGGGGGAGAAGAAGGTGTCGTCATGC
CAAAGTTTTGAACATACGAAAATGAAAGCTGAAATTCCGCCACCTTATCC
TCCCCAAAATCCAAGTATAATACCGGTGTCTACGCGCCCTGTGCGCTTCT
GGACGTAG back to top
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