mRNA_E-siliculosus-1a_F_contig1308.1870.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1308.1870.1
Unique NamemRNA_E-siliculosus-1a_F_contig1308.1870.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1308.1870.1 vs. uniprot
Match: A0A6H5L7Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q1_9PHAE)

HSP 1 Score: 621 bits (1601), Expect = 1.310e-220
Identity = 359/435 (82.53%), Postives = 375/435 (86.21%), Query Frame = 1 
Query:    1 MATWSSICSLVALCAAVGCFRLLLILSRHVSLLAGAASNVLDNNESKRGRKRMRGLSLTETRPRSAGVHQTRSRVDPQGSVFSGRFEKVWLAFDSLLDRVAVVENDANVENDASLLKGKLSTAIEDAVAGGIAAAEQKMALAFQAKMAQAVTNEMGKWRVMQEDREAWWQRKFDLEENKLGTALAAAVASHEDAMAARQRKCAATVDSVHDDVLQLKEQAADNAAGKAADDSAARETAAMANLLRSIHATHQRQQEAVVAVQQEVRECLARRKVEEASSASRGDRPSAAAEASPRPPSMDDTTKLRNVKSDLDSLGARLLALENAGNGLVNPRKLNRTLHKVHESVLESIRVWGEEPLVGPVYTEWVLRKFKKNSSKTGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASNDCMSGGGEGGQGRAPST 1305
            MATWS ICSLVALCAAVGCFRLLLILSRHVSLLAGAASN LDNNE K GRKRMRG  L ETR RS G HQ+RSRVDPQGSVFS RFEKVW+AFD LLDRVAVVE+DAN++NDA+L KGKLS ++EDAVA GIAAAEQKMALAFQAKMAQAV NE GKWRVMQE REAWWQRKFDLEENKLGTALAAAVASHEDAM AR+RKC ATVDSV  DVLQLKEQAA NAA KAADD++ARE AAMA+LLR+I+ATHQ QQEAVVAVQQEVRECLARRKVEEASSASRGD  SAAAEASPRPPSMDDTTKLRNVKSDLDSLGARLLALENAGNGLV+PRKLNRTLHKVHESVLESIRVWGEEPLVGPVYTEWVLRK KKNSSK GPG                          XXXXXXXX   DCM GGGEGGQGRAPS+
Sbjct:    1 MATWSIICSLVALCAAVGCFRLLLILSRHVSLLAGAASNALDNNERKSGRKRMRG-HLPETRRRSTGAHQSRSRVDPQGSVFSSRFEKVWVAFDRLLDRVAVVEHDANLDNDANLSKGKLSASMEDAVAAGIAAAEQKMALAFQAKMAQAVMNETGKWRVMQESREAWWQRKFDLEENKLGTALAAAVASHEDAMEARERKCTATVDSVRADVLQLKEQAAGNAARKAADDASAREKAAMADLLRAINATHQMQQEAVVAVQQEVRECLARRKVEEASSASRGDPLSAAAEASPRPPSMDDTTKLRNVKSDLDSLGARLLALENAGNGLVSPRKLNRTLHKVHESVLESIRVWGEEPLVGPVYTEWVLRKLKKNSSKIGPGSGDEGDEKTTPREKSEGGSGKGGSTTXXXXXXXXXXXDCMPGGGEGGQGRAPSS 434
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BLAST of mRNA_E-siliculosus-1a_F_contig1308.1870.1 vs. uniprot
Match: D7FID0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID0_ECTSI)

HSP 1 Score: 510 bits (1313), Expect = 3.070e-175
Identity = 289/329 (87.84%), Postives = 298/329 (90.58%), Query Frame = 1 
Query:    1 MATWSSICSLVALCAAVGCFRLLLILSRHVSLLAGAASNVLDNNESKRGRKRMRGLSLTETRPRSAGVHQTRSRVDPQGSVFSGRFEKVWLAFDSLLDRVAVVENDANVENDASLLKGKLSTAIEDAVAGGIAAAEQKMALAFQAKMAQAVTNEMGKWRVMQEDREAWWQRKFDLEENKLGTALAAAVASHEDAMAARQRKCAATVDSVHDDVLQLKEQAADNAAGKAADDSAARETAAMANLLRSIHATHQRQQEAVVAVQQEVRECLARRKVEEASSASRGDRPSAAAEASPRPPSMDDTTKLRNVKSDLDSLGARLLALENAGNGL 987
            M  WS ICS+VALCAAVGCFRLLLILSRHVSLL GAAS VLDNNESKRGRKRMR LSLT TRPRSAG HQTRSRVDPQGSVFSG+FEK+WLAFD+LL RVAVVENDANVENDA+LLKG LS AIEDAVAGGIAAAEQKMALAFQAKMAQAV NEMGK RVMQE REAWWQRKFDLEENKLGTALAAAVASHEDAMAARQRK AAT +SV DDVLQLKEQAADNAAGK          AA ANLLRSI ATHQRQQEAV+A+QQEVRECLARRKVEE SSASRGDRPS AAEASPRPPSM+DTTKLRNVKSDLDSLGARLLALENAGNGL
Sbjct:    1 MTPWSGICSMVALCAAVGCFRLLLILSRHVSLLVGAASKVLDNNESKRGRKRMRDLSLTGTRPRSAGAHQTRSRVDPQGSVFSGKFEKIWLAFDNLLHRVAVVENDANVENDANLLKGNLSAAIEDAVAGGIAAAEQKMALAFQAKMAQAVVNEMGKRRVMQEGREAWWQRKFDLEENKLGTALAAAVASHEDAMAARQRKYAATFNSVRDDVLQLKEQAADNAAGKXXXXXXXXXKAATANLLRSISATHQRQQEAVMALQQEVRECLARRKVEEVSSASRGDRPSVAAEASPRPPSMEDTTKLRNVKSDLDSLGARLLALENAGNGL 329
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BLAST of mRNA_E-siliculosus-1a_F_contig1308.1870.1 vs. uniprot
Match: A0A6H5JRQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ2_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 5.200e-81
Identity = 188/377 (49.87%), Postives = 238/377 (63.13%), Query Frame = 1 
Query:    1 MATWSSICSLVALCAAVGCFRLLLILSRHVSLLA-----GAASNVLDNNESKRGRKRMRGLSLTETRPRSAG-VHQTR--SRVDPQGSVFSGRFEKVWLAFDSLLDRV-AVVENDANVENDASLLKGKLSTAIEDAVAGGIAAAEQKMALAFQAKMAQAVTNEMGKWRVMQEDREAWWQRKFDLEENKLGTALAAAVASHEDAMAARQRKCAATVDSVHDDVLQLKEQAADNA-AGKAADDSAARETAAMANLLRSIHATHQRQQEAVVAVQQEVRECLARRKVEEASSASRGDRPSAAAEASPRPPSMDDTTKLRNVKSDLDSLGARLLALENAGNGLVNPRKLNRTLHKVHESVLESIRVWGEEPLVGPVYTEWV 1101
            MA+WS ICS+VA CAA+GCF LL  LSR + LLA     G    + D  ESKR   R     +  T PRS G  H TR  +R + QG+    RFEKV LAFD L D   A VEND     D     G L+ AI+D VA GIAA+E KM LAFQ+++ QA+  +MG  + M+  REAWW+RK D  E++LG ALAAAVAS E  MA R+ KCAATV +V DDVL+LKEQA DN  AG+A D +AA+E AA+A L RSI    ++  E V  VQ+E++EC A  +    ++A  GD    A  A   P S+D T KL NVKSD+D LG+RLL +ENA        +++   ++VHESV+ES RVWG EPLV P+YT+W+
Sbjct:    1 MASWSGICSVVAPCAALGCFWLLFTLSRRLILLAEAVLDGGVDRLFDK-ESKRRCGRDHDPGVDGTSPRSVGGAHPTRPGNRANSQGADGDRRFEKVRLAFDGLFDGGGAGVEND-----DVDRFMGLLTAAIDDVVAAGIAASEAKMGLAFQSQITQALEEKMGTAQAMERHREAWWKRKLDGMESRLGRALAAAVASQEGTMAIREEKCAATVAAVCDDVLRLKEQATDNTVAGEATDGAAAKEKAAVAELTRSIAEKQEKMNERVAKVQREMQECFAEGRP---AAAPCGD---GAGAAMVSPSSVDHTAKLNNVKSDIDYLGSRLLIVENAA---YEADEMHGIFYRVHESVVESTRVWGTEPLVAPLYTDWL 362
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1308.1870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L7Q1_9PHAE1.310e-22082.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FID0_ECTSI3.070e-17587.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRQ2_9PHAE5.200e-8149.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1308contigE-siliculosus-1a_F_contig1308:7848..9155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1308
Model size1308
Exons1
Ec32 orthologEc-11_001440.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.1751192-CDS-E-siliculosus-1a_F_contig1308:7847..91551622927829.1751192-CDS-E-siliculosus-1a_F_contig1308:7847..9155Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1308 7848..9155 -
1696318697.843442-CDS-E-siliculosus-1a_F_contig1308:7847..91551696318697.843442-CDS-E-siliculosus-1a_F_contig1308:7847..9155Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1308 7848..9155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1308.1870.1prot_E-siliculosus-1a_F_contig1308.1870.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1308 7848..9155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1308.1870.1

>prot_E-siliculosus-1a_F_contig1308.1870.1 ID=prot_E-siliculosus-1a_F_contig1308.1870.1|Name=mRNA_E-siliculosus-1a_F_contig1308.1870.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=436bp
MATWSSICSLVALCAAVGCFRLLLILSRHVSLLAGAASNVLDNNESKRGR
KRMRGLSLTETRPRSAGVHQTRSRVDPQGSVFSGRFEKVWLAFDSLLDRV
AVVENDANVENDASLLKGKLSTAIEDAVAGGIAAAEQKMALAFQAKMAQA
VTNEMGKWRVMQEDREAWWQRKFDLEENKLGTALAAAVASHEDAMAARQR
KCAATVDSVHDDVLQLKEQAADNAAGKAADDSAARETAAMANLLRSIHAT
HQRQQEAVVAVQQEVRECLARRKVEEASSASRGDRPSAAAEASPRPPSMD
DTTKLRNVKSDLDSLGARLLALENAGNGLVNPRKLNRTLHKVHESVLESI
RVWGEEPLVGPVYTEWVLRKFKKNSSKTGPGAGGEGDDNTTPRKKSEGES
GKGSSTTEEGEGDGSASNDCMSGGGEGGQGRAPST*
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mRNA from alignment at E-siliculosus-1a_F_contig1308:7848..9155-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1308.1870.1 ID=mRNA_E-siliculosus-1a_F_contig1308.1870.1|Name=mRNA_E-siliculosus-1a_F_contig1308.1870.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1308bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1308:7848..9155- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGACCTGGTCCAGCATCTGCTCGCTGGTGGCGCTGTGTGCCGCGGT
TGGCTGCTTCCGGCTGTTGCTCATCCTCAGCCGGCACGTGTCACTGCTCG
CTGGAGCTGCATCCAATGTGCTCGACAACAACGAAAGCAAGAGAGGGCGC
AAGCGCATGCGGGGTCTTAGCCTTACCGAAACCAGACCAAGGTCCGCGGG
GGTTCACCAGACCAGGAGCCGTGTCGACCCCCAGGGCTCTGTTTTCAGCG
GCAGGTTCGAGAAGGTGTGGCTGGCTTTCGACAGCCTTCTCGACCGCGTG
GCGGTGGTGGAGAATGACGCGAATGTCGAAAACGATGCGAGCCTCTTGAA
GGGAAAGCTTTCCACCGCGATCGAGGATGCCGTCGCCGGCGGCATCGCGG
CCGCAGAGCAGAAGATGGCGCTGGCCTTCCAGGCCAAGATGGCACAGGCC
GTCACGAACGAGATGGGGAAGTGGCGCGTGATGCAGGAGGACCGGGAGGC
GTGGTGGCAGAGGAAGTTCGACCTCGAAGAGAACAAGCTTGGCACCGCCC
TCGCCGCCGCCGTCGCTTCGCACGAGGACGCCATGGCAGCTCGCCAAAGG
AAGTGCGCGGCAACCGTCGACTCCGTCCATGACGACGTCCTCCAGCTCAA
GGAGCAAGCTGCCGACAACGCCGCGGGGAAGGCGGCCGACGACTCTGCTG
CAAGGGAGACGGCGGCGATGGCGAATCTCCTCCGCTCCATTCATGCGACG
CACCAGAGGCAGCAGGAGGCGGTGGTGGCGGTGCAGCAGGAGGTGCGGGA
GTGCCTGGCGCGGAGGAAGGTGGAGGAAGCGTCTTCGGCGTCCCGTGGCG
ACCGGCCGAGTGCTGCGGCGGAGGCGTCGCCACGGCCGCCGTCGATGGAC
GACACGACCAAGCTCCGCAACGTCAAGAGCGACCTCGACTCTCTCGGAGC
CCGCCTCCTTGCCCTCGAGAACGCGGGAAACGGCTTGGTGAACCCACGCA
AGCTGAACAGGACCCTCCACAAGGTCCACGAGAGCGTCTTGGAGTCGATC
AGGGTCTGGGGGGAGGAACCGCTCGTAGGCCCCGTGTATACGGAATGGGT
GCTCAGGAAGTTCAAGAAGAATAGCTCGAAGACAGGGCCGGGGGCGGGGG
GCGAGGGAGACGACAACACAACGCCGCGCAAGAAGAGTGAGGGGGAATCG
GGTAAGGGAAGCTCTACGACGGAGGAGGGAGAGGGAGACGGCAGCGCATC
CAACGATTGCATGTCTGGTGGGGGAGAGGGAGGACAGGGCCGTGCCCCCA
GCACCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1308:7848..9155-

>mRNA_E-siliculosus-1a_F_contig1308.1870.1 ID=mRNA_E-siliculosus-1a_F_contig1308.1870.1|Name=mRNA_E-siliculosus-1a_F_contig1308.1870.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2616bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1308:7848..9155- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGACCTGGTCCAGCATCTGCTCGCTGGTGGCGCTGTGTGCCGCGGT
TGGCTGCTTCCGGCTGTTGCTCATCCTCAGCCGGCACGTGTCACTGCTCG
CTGGAGCTGCATCCAATGTGCTCGACAACAACGAAAGCAAGAGAGGGCGC
AAGCGCATGCGGGGTCTTAGCCTTACCGAAACCAGACCAAGGTCCGCGGG
GGTTCACCAGACCAGGAGCCGTGTCGACCCCCAGGGCTCTGTTTTCAGCG
GCAGGTTCGAGAAGGTGTGGCTGGCTTTCGACAGCCTTCTCGACCGCGTG
GCGGTGGTGGAGAATGACGCGAATGTCGAAAACGATGCGAGCCTCTTGAA
GGGAAAGCTTTCCACCGCGATCGAGGATGCCGTCGCCGGCGGCATCGCGG
CCGCAGAGCAGAAGATGGCGCTGGCCTTCCAGGCCAAGATGGCACAGGCC
GTCACGAACGAGATGGGGAAGTGGCGCGTGATGCAGGAGGACCGGGAGGC
GTGGTGGCAGAGGAAGTTCGACCTCGAAGAGAACAAGCTTGGCACCGCCC
TCGCCGCCGCCGTCGCTTCGCACGAGGACGCCATGGCAGCTCGCCAAAGG
AAGTGCGCGGCAACCGTCGACTCCGTCCATGACGACGTCCTCCAGCTCAA
GGAGCAAGCTGCCGACAACGCCGCGGGGAAGGCGGCCGACGACTCTGCTG
CAAGGGAGACGGCGGCGATGGCGAATCTCCTCCGCTCCATTCATGCGACG
CACCAGAGGCAGCAGGAGGCGGTGGTGGCGGTGCAGCAGGAGGTGCGGGA
GTGCCTGGCGCGGAGGAAGGTGGAGGAAGCGTCTTCGGCGTCCCGTGGCG
ACCGGCCGAGTGCTGCGGCGGAGGCGTCGCCACGGCCGCCGTCGATGGAC
GACACGACCAAGCTCCGCAACGTCAAGAGCGACCTCGACTCTCTCGGAGC
CCGCCTCCTTGCCCTCGAGAACGCGGGAAACGGCTTGGTGAACCCACGCA
AGCTGAACAGGACCCTCCACAAGGTCCACGAGAGCGTCTTGGAGTCGATC
AGGGTCTGGGGGGAGGAACCGCTCGTAGGCCCCGTGTATACGGAATGGGT
GCTCAGGAAGTTCAAGAAGAATAGCTCGAAGACAGGGCCGGGGGCGGGGG
GCGAGGGAGACGACAACACAACGCCGCGCAAGAAGAGTGAGGGGGAATCG
GGTAAGGGAAGCTCTACGACGGAGGAGGGAGAGGGAGACGGCAGCGCATC
CAACGATTGCATGTCTGGTGGGGGAGAGGGAGGACAGGGCCGTGCCCCCA
GCACCTAGATGGCGACCTGGTCCAGCATCTGCTCGCTGGTGGCGCTGTGT
GCCGCGGTTGGCTGCTTCCGGCTGTTGCTCATCCTCAGCCGGCACGTGTC
ACTGCTCGCTGGAGCTGCATCCAATGTGCTCGACAACAACGAAAGCAAGA
GAGGGCGCAAGCGCATGCGGGGTCTTAGCCTTACCGAAACCAGACCAAGG
TCCGCGGGGGTTCACCAGACCAGGAGCCGTGTCGACCCCCAGGGCTCTGT
TTTCAGCGGCAGGTTCGAGAAGGTGTGGCTGGCTTTCGACAGCCTTCTCG
ACCGCGTGGCGGTGGTGGAGAATGACGCGAATGTCGAAAACGATGCGAGC
CTCTTGAAGGGAAAGCTTTCCACCGCGATCGAGGATGCCGTCGCCGGCGG
CATCGCGGCCGCAGAGCAGAAGATGGCGCTGGCCTTCCAGGCCAAGATGG
CACAGGCCGTCACGAACGAGATGGGGAAGTGGCGCGTGATGCAGGAGGAC
CGGGAGGCGTGGTGGCAGAGGAAGTTCGACCTCGAAGAGAACAAGCTTGG
CACCGCCCTCGCCGCCGCCGTCGCTTCGCACGAGGACGCCATGGCAGCTC
GCCAAAGGAAGTGCGCGGCAACCGTCGACTCCGTCCATGACGACGTCCTC
CAGCTCAAGGAGCAAGCTGCCGACAACGCCGCGGGGAAGGCGGCCGACGA
CTCTGCTGCAAGGGAGACGGCGGCGATGGCGAATCTCCTCCGCTCCATTC
ATGCGACGCACCAGAGGCAGCAGGAGGCGGTGGTGGCGGTGCAGCAGGAG
GTGCGGGAGTGCCTGGCGCGGAGGAAGGTGGAGGAAGCGTCTTCGGCGTC
CCGTGGCGACCGGCCGAGTGCTGCGGCGGAGGCGTCGCCACGGCCGCCGT
CGATGGACGACACGACCAAGCTCCGCAACGTCAAGAGCGACCTCGACTCT
CTCGGAGCCCGCCTCCTTGCCCTCGAGAACGCGGGAAACGGCTTGGTGAA
CCCACGCAAGCTGAACAGGACCCTCCACAAGGTCCACGAGAGCGTCTTGG
AGTCGATCAGGGTCTGGGGGGAGGAACCGCTCGTAGGCCCCGTGTATACG
GAATGGGTGCTCAGGAAGTTCAAGAAGAATAGCTCGAAGACAGGGCCGGG
GGCGGGGGGCGAGGGAGACGACAACACAACGCCGCGCAAGAAGAGTGAGG
GGGAATCGGGTAAGGGAAGCTCTACGACGGAGGAGGGAGAGGGAGACGGC
AGCGCATCCAACGATTGCATGTCTGGTGGGGGAGAGGGAGGACAGGGCCG
TGCCCCCAGCACCTAG
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