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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1297.1801.1 vs. uniprot
Match: A0A6H5L838_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L838_9PHAE) HSP 1 Score: 168 bits (425), Expect = 6.730e-49 Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 1
Query: 73 MVWGSLPPRVTRVAMRAGLCCARTGLRRSGGRYAKRGGFLSTATKVPLPDITFGVESEPALPLLGDLPLLQISQSLACPEPEGDDDGDGR 342
MVWGSLPPRVTRVAM+AGL CARTG RRSGGRYAKRGGFLSTA KVPLPDITF VESEPALPLLGDLPLL ISQSLACPEPEGDDDGDGR
Sbjct: 1 MVWGSLPPRVTRVAMQAGLRCARTGSRRSGGRYAKRGGFLSTAAKVPLPDITFDVESEPALPLLGDLPLLLISQSLACPEPEGDDDGDGR 90
BLAST of mRNA_E-siliculosus-1a_F_contig1297.1801.1 vs. uniprot
Match: D7FMH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH9_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 5.220e-16 Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2
Query: 302 HVQSRRETMTVTAADTGPPGFNRSPRRAVFEKPGGISGIR 421
HVQSRRETMTVTAADTGPPGFNRSPRRAVF KPGGISGI+
Sbjct: 32 HVQSRRETMTVTAADTGPPGFNRSPRRAVFGKPGGISGIQ 71
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 273 |
| Model size | 1034 |
| Exons | 4 |
| Ec32 ortholog | Ec-23_000370.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | mitochondrion |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1297.1801.1 >prot_E-siliculosus-1a_F_contig1297.1801.1 ID=prot_E-siliculosus-1a_F_contig1297.1801.1|Name=mRNA_E-siliculosus-1a_F_contig1297.1801.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=91bp
MVWGSLPPRVTRVAMRAGLCCARTGLRRSGGRYAKRGGFLSTATKVPLPD
ITFGVESEPALPLLGDLPLLQISQSLACPEPEGDDDGDGR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1297:15159..18527+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1297.1801.1 ID=mRNA_E-siliculosus-1a_F_contig1297.1801.1|Name=mRNA_E-siliculosus-1a_F_contig1297.1801.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3369bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1297:15159..18527+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGAACGAAGGGCTGCTGCTCTGATTTCCTCACACTCTTGCGGTTGCGT
GCTGCCGTGGCCTGGGAGTCTCATGGTATGGGGATCACTGCCTCCCCGGG
TAACGCGGGTGGCTATGCGGGCGGGCCTTTGCTGTGCGCGAACAGGCTTA
CGGTGAGAGCAAACCACAATTTCCCTCTCAGTATATGGTACTTCATGACT
TTGGACATATATACGGTCGTGCCGCAGGCTGGGGTGCTGGGTGTGTCTCT
GAGTCGTCATTTGAATGGCTGTTGTAGCTCTCTCGCCTCCCTCGCTGGGT
GGGGTGTGTGAATCTGTTGTTGCTGTGAGTTTGTGCCCGACCTCTTGCAT
TCGCCGAGCTTGTACGTGTTCGTATGCATACATACCCAATGGCAACGTCC
TTGACCCAGGGCTCGAAGAAACCGCGGCCTATGTACAGAGTCCAGACTAC
TGCTGTACACCAGCCTCACGGTACACCAAAGACGGGAAGCTTGCTGCAAT
ACACCTATGTACCAGACACACAGCAGTTGCGTTGATAGGTTTTGTTCTTT
CCGGTGCGTACGACGCATGAGTCAACGCGTTCGTCATGCATGGAGTACCG
CTGTGCGTATTTCGGGCGGCTTCGGGCACCGCGACATGCACATCCCCACC
TTTGGCTGTGACATCGGCCACGCCTGCGAGAGAGCGGTCAGTCTCACTAC
ATCGTCTACAGTAGTATCTGTCACAAAGTGCTGTGTATTGCATCAGTCGA
CGTACATTTGCACAACACGTCGGTGGTCACGCCGTTCCCTCCCGCGATGC
AATACTACTGCTGTACAAACCACACGGAATCCCCGGACCAAAAGTTGCCA
CGGCTCGAAGGCTGAACGGCATTCTTTACAGAGAACCGAGTGCCCCGAGT
TGGTTTGTTGTTGCTCTCGCACGCGGTATACGACGGCGCATGAGACATTT
TCCTGACAAGGGGACGTGAGTATCCGGCCCGACAGACAGTGCAAGTGTTG
GTGAGCTGTTGAATCAGCTACAGAACGAATCTCAGCGCTAAGCTCACGGT
TGAAATTCTATTGCCGTGACGTTCCGTTTGACTGCTGTGTACACGTACTT
TTACAATCTTAAAGATGTAAAATCTCAAGCGATACTTGCACCGGGTCTTC
ACCCGCGTAGGAATTTTGTATAAAGAGGAGGGATCTTGCCCACTCGTCAT
TCCTGAACTTGATGCGTGACGTAATGTTATTATAGTGTTTCACCAGTAAA
TGTGACGACGTTTCCACGTGCTTGTGCCCAACAGGAGGAGTGGTGGGCGA
TACGCCAAGCGCGGAGGCTTTCTCTCCACCGCAACCAAGGTAAACGCGCG
TCACCACGCAGCAGAGCAATACGATCACTTCCTTCGCCGTGGGGCAAATC
GTCGTGTACTGTATCCACAGACTCTCCGTGTCTCTGTCAACCTTTTATCC
GTCGGTATTCCCGTGGTTTGTGTAGGCTGAACGTTGCACCGTCACGCATC
AAAAGAACGATATCGAGCTCTCGCGCCTCCGGCCCTAGGGTGTTAAGGTG
TACAACATCCACTAGGCTACAAGTCAGCCGTCAGCCGTTGATTTCGCTGA
CTTGTAGCATAGTGGATATGCTGTACACCTTAACATAAAGTTCAGCACCA
ACCCGGCGCAAGAGTGTTAATGGTTCAGATGGGCGGTCGACTGATTGCTG
TCGCTATTCTCTGGCCTTGGCGCTGTGGCGTTTGGCAGCAGCTGCTACAG
ATAATAAATGCAGCTGTTCCTGACAAGCCCCCTGCGCGCTCGTCCTCCCT
CATGTTCACCACTGCTGCAACGGTCAGGTGCCATTGCCGGATATCACTTT
CGGTGTAGAATCGGAGCCAGCGTTGCCCTTGCTGGGAGATCTTCCACTTT
TGCAGATTTCTCAGTCTCTAGGTAAGCGGTGGAGTTGAAGCAGCCCTTGT
GCGCTTAGCTAGGGCTGCGTGGGACATCTTTGTCAACGCTGATTGGAAAG
CAACCCATTCGCTACCACTTACTCCGTTGTCCATTGCAGCTCAAAGCTGA
AAGGAGGTGAATTTTCATGCACAACAAATGTTAGCGGCGTTGCTTGTGTT
CGGTTGTCCTGGTGTGGTTCGCATGCCATGTTCCAAGGCGAGGGCACCCA
CGTTCCCTGAACGCTGCCAAGCTTTCGCGGGAATGTCTCGTTGCGCCTAC
TGCCAGTAAAGGGGGAAAATATCACTGCTGTCTGTCACTGCTGTCTCAGC
TTGTGCTCTTCCGATGTCGAGACAGCAGGCCTTGCGTCTCCGAGATGTCA
CTGTTTTGTCTCAAGACACCCCCGTCTCAAGATATTAATATTGCGATACT
GCTGCTTTGTCTCCATATATTTCAGCATTGCAATACTGTATCGTCTCCTT
AGTTTTCAGCGTTGCGATATTGCTGTATCCTCTCCTTTTTCTGCAGCATT
GCAATGCTGTTGTATCCTCTCCATATTTTTCAGCGTTGCGATATTGCTGT
ATATATAGTCTCCTTATTTTTCGGTGTTGCGATATTGCTGTATCGTGTCC
TTTTTTTTGCAGCATTGCGATACTGCTGTATTGTCTCTTTTTTTTCAGCA
TTGCAATACTGCTGTATCCTCTCCTTTATTCTGCAGCATGTCCAGAGCCG
GAGGGAGACGATGACGGTGACGGCCGCTGACACCGGCCCGCCCGGTTTCA
ATCGATCACCGAGGCGTGCGGTGTTCGAGAAACCGGGCGGGATAAGTGGC
ATCCGAGATTGTCCAAGAAGCATAATACATTTGTGGAGGGGAGGTGATGC
TAGAGATGTCTTGGTTGGGTGGGGAGGGGGCACTCGAACGAAATGAGACG
AAGAGTGTCGCAAATCGGTTGGCACCGGTGGCGTCTATCCGTTTAATTAA
GTGGTTCACGAAGCGTTGTGAAGGCTTATGTGACCCCGCGGATACGACGA
GGCGTCGTGGTTGCGGGGGTGTTCGTTTGTCATTTCCGGACACTCCTGAC
GAAGGCAACGAGGTCGTTTGAAACACGAGCGGGAGCATGTGTACCGTCAA
ATATGTGTGAGGCAGGGTGGCCAATGATGTCGTTTGATAGAAGGGCGGGG
GCATGTGTACCGTCAAAGGTGTGTGAGGCAAGCGTGGACGCCATCATCGG
CGCGAAGGAACCTGGTATGTGTGAAACTTCGCTCCAGGGTTCTGGAACTT
GTGTGCCGCGCGGTAGGGCAACACAACAAGCGTTTGTTGTATGTGCGCCA
CGAAGATAAATGTGGTACAGTAGTGCACCATGCGGCCATCGTCACACATG
CCGCAATACAGCGAATGGACTCACGCGCCGCGTGCATATCGTGCTATGCT
CTGCTATGTGCATACCAGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1297:15159..18527+ >mRNA_E-siliculosus-1a_F_contig1297.1801.1 ID=mRNA_E-siliculosus-1a_F_contig1297.1801.1|Name=mRNA_E-siliculosus-1a_F_contig1297.1801.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1297:15159..18527+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTATGGGGATCACTGCCTCCCCGGGTAACGCGGGTGGCTATGCGGGC
GGGCCTTTGCTGTGCGCGAACAGGCTTACGATGGTATGGGGATCACTGCC
TCCCCGGGTAACGCGGGTGGCTATGCGGGCGGGCCTTTGCTGTGCGCGAA
CAGGCTTACGGAGGAGTGGTGGGCGATACGCCAAGCGCGGAGGCTTTCTC
TCCACCGCAACCAAGGAGGAGTGGTGGGCGATACGCCAAGCGCGGAGGCT
TTCTCTCCACCGCAACCAAGGTGCCATTGCCGGATATCACTTTCGGTGTA
GAATCGGAGCCAGCGTTGCCCTTGCTGGGAGATCTTCCACTTTTGCAGAT
TTCTCAGTCTCTAGGTGCCATTGCCGGATATCACTTTCGGTGTAGAATCG
GAGCCAGCGTTGCCCTTGCTGGGAGATCTTCCACTTTTGCAGATTTCTCA
GTCTCTAGCATGTCCAGAGCCGGAGGGAGACGATGACGGTGACGGCCGCT
GACATGTCCAGAGCCGGAGGGAGACGATGACGGTGACGGCCGCTGA back to top
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