mRNA_E-siliculosus-1a_F_contig12927.1785.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12927.1785.1
Unique NamemRNA_E-siliculosus-1a_F_contig12927.1785.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12927.1785.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 6.780e-18
Identity = 60/172 (34.88%), Postives = 97/172 (56.40%), Query Frame = 1 
Query:   46 PEPSLAKALEQTRTVIDDRRPWYEALVLRTQAARANAGDTSVATVSEIVDGFSFLVNAVNVDLLKPVCFGLQELFAAVQGATAAREELIDLLGYCVSITSIVLNHALLADLPEHVKRALMDVEAEIKAINGNARLFDAKT-GCSLPCRRLRLHAKDREEIQEHKVRLQEILD 558
            P  S  +AL +    ++   PW+E L LR Q      GD +V T+    +  S L+NA N  +L PV   L+ L  AVQGA AAREE+++L  YCV+++  +L+ A    +PE +K  L + + E++A+    + +  ++ GC    RR+ L+A DR+    HK +L+++LD
Sbjct:   32 PVRSQREALAEAARRMEAETPWFEKLGLRYQDVADGGGDLTVETILAF-NVASGLINAANETVLAPVFVVLKGLLGAVQGAAAAREEIVELARYCVAMSRCLLDAAKADVMPETIKSTLEEFKGEMEAVGRFVQTYGTRSSGCCW--RRMVLNAHDRDTAAGHKRKLKDLLD 200
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12927.1785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH19_ECTSI6.780e-1834.88NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12927contigE-siliculosus-1a_F_contig12927:147..1397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size558
Model size585
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03019,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
EggNOG free text desc.determination of stomach left/right asymmetry
KEGG Pathwayko05132,map05132
KEGG koko:K10407
Seed eggNOG ortholog2880.D7FH19
Seed ortholog evalue6.2e-17
Seed ortholog score94.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12927.1785.1prot_E-siliculosus-1a_F_contig12927.1785.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12927 147..1370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927813.1124332-CDS-E-siliculosus-1a_F_contig12927:146..6651622927813.1124332-CDS-E-siliculosus-1a_F_contig12927:146..665Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12927 147..665 -
1696318690.887576-CDS-E-siliculosus-1a_F_contig12927:146..6651696318690.887576-CDS-E-siliculosus-1a_F_contig12927:146..665Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12927 147..665 -
1622927813.1221402-CDS-E-siliculosus-1a_F_contig12927:1331..13701622927813.1221402-CDS-E-siliculosus-1a_F_contig12927:1331..1370Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12927 1332..1370 -
1696318690.9153793-CDS-E-siliculosus-1a_F_contig12927:1331..13701696318690.9153793-CDS-E-siliculosus-1a_F_contig12927:1331..1370Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12927 1332..1370 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927813.1310399-UTR-E-siliculosus-1a_F_contig12927:1370..13971622927813.1310399-UTR-E-siliculosus-1a_F_contig12927:1370..1397Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12927 1371..1397 -
1696318690.9286573-UTR-E-siliculosus-1a_F_contig12927:1370..13971696318690.9286573-UTR-E-siliculosus-1a_F_contig12927:1370..1397Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12927 1371..1397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12927.1785.1

>prot_E-siliculosus-1a_F_contig12927.1785.1 ID=prot_E-siliculosus-1a_F_contig12927.1785.1|Name=mRNA_E-siliculosus-1a_F_contig12927.1785.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=186bp
MDNTLLPEPSLAKALEQTRTVIDDRRPWYEALVLRTQAARANAGDTSVAT
VSEIVDGFSFLVNAVNVDLLKPVCFGLQELFAAVQGATAAREELIDLLGY
CVSITSIVLNHALLADLPEHVKRALMDVEAEIKAINGNARLFDAKTGCSL
PCRRLRLHAKDREEIQEHKVRLQEILDLATTAAVFD
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mRNA from alignment at E-siliculosus-1a_F_contig12927:147..1397-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12927.1785.1 ID=mRNA_E-siliculosus-1a_F_contig12927.1785.1|Name=mRNA_E-siliculosus-1a_F_contig12927.1785.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1251bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12927:147..1397- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCGCCAAACCTAGATCAAAGTTGTGATGGACAACACTCTGCTCCCGGA
ACCCTCCTTGGCTAAGGTGAGGGTCGTCTTTCAACCTACTGGTTGCCCTT
CAGAGTTCCACCAGGAGTTGTTGGTTTCTTGCCAAGGCTTGTCATGTCGG
TGTAGGTGTATTGGACCCCGGAAGCTCCAAGACCTATCGCTCAGAAACGT
TTGGAAGTTGGCTGTGACGAAGACGTACACCTTCACCGAGCCAGGCACAC
AAGAAAGATCTCTCTCGCGGGATGAAACACGGCCCTCAACCGAGAATAGC
TCCCCGCAACACACGCACGTGCAGTAGGCGGTGCATGTGGAGTTTGTTCT
TACAGTTCATGCGAGTTCAGGACCTACCCCTACACTTTGCTTTACACGAG
GCAGCTGTGCTGGTGTCTCCATCTGGAGTATTCCCCACATGACATTTCGA
TTACATGTTTCGTGCCCCTCAGCCCCATTGCGACTGCCCGCAAGCGGAGA
TTCGCGTTGGAATTGGCCTTACCATGAAGGACGTTGCAGCACAGTGTCCA
AAGTGTTAGAGCCACGACCACGTCCAAACCAGTTCGCCTCAACCGCGCCT
CAAATGATCGCCATGCTATGGTAGCGAGGGTGCGTTGCACAGAACGGCAT
TCCAGAGAAGGCGTCGCGTGGAGCGCCGTACAGTATTCCCCCAGACCTGA
CCTTCAGCGACGATGTTGTCCCCATCTCGCAGGCGTTGGAGCAGACAAGA
ACGGTCATCGATGACCGCCGACCGTGGTATGAAGCGCTAGTCCTTCGAAC
TCAAGCCGCGAGGGCTAACGCTGGAGACACATCTGTGGCGACGGTCTCCG
AAATCGTGGACGGATTCTCGTTCTTGGTGAATGCGGTGAATGTGGATTTG
CTCAAGCCTGTCTGTTTCGGCCTCCAAGAGCTTTTCGCAGCCGTTCAGGG
AGCTACAGCCGCCCGCGAAGAACTGATTGATCTCCTCGGCTACTGCGTCT
CGATAACGAGTATCGTGCTGAACCATGCCCTGCTCGCCGACCTTCCCGAG
CACGTCAAGAGAGCTTTGATGGACGTCGAGGCCGAGATCAAGGCCATCAA
CGGCAATGCCAGGTTGTTCGACGCGAAGACCGGCTGCAGCTTGCCGTGCC
GAAGGTTGCGTCTGCACGCCAAGGATCGCGAGGAGATCCAAGAGCACAAG
GTTCGGCTGCAGGAGATCCTGGATCTCGCGACGACGGCCGCCGTGTTCGA
C
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12927:147..1397-

>mRNA_E-siliculosus-1a_F_contig12927.1785.1 ID=mRNA_E-siliculosus-1a_F_contig12927.1785.1|Name=mRNA_E-siliculosus-1a_F_contig12927.1785.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1116bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12927:147..1397- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACAACACTCTGCTCCCGGAACCCTCCTTGGCTAAGATGGACAACAC
TCTGCTCCCGGAACCCTCCTTGGCTAAGGCGTTGGAGCAGACAAGAACGG
TCATCGATGACCGCCGACCGTGGTATGAAGCGCTAGTCCTTCGAACTCAA
GCCGCGAGGGCTAACGCTGGAGACACATCTGTGGCGACGGTCTCCGAAAT
CGTGGACGGATTCTCGTTCTTGGTGAATGCGGTGAATGTGGATTTGCTCA
AGCCTGTCTGTTTCGGCCTCCAAGAGCTTTTCGCAGCCGTTCAGGGAGCT
ACAGCCGCCCGCGAAGAACTGATTGATCTCCTCGGCTACTGCGTCTCGAT
AACGAGTATCGTGCTGAACCATGCCCTGCTCGCCGACCTTCCCGAGCACG
TCAAGAGAGCTTTGATGGACGTCGAGGCCGAGATCAAGGCCATCAACGGC
AATGCCAGGTTGTTCGACGCGAAGACCGGCTGCAGCTTGCCGTGCCGAAG
GTTGCGTCTGCACGCCAAGGATCGCGAGGAGATCCAAGAGCACAAGGTTC
GGCTGCAGGAGATCCTGGATCTCGCGACGACGGCCGCCGTGTTCGACGCG
TTGGAGCAGACAAGAACGGTCATCGATGACCGCCGACCGTGGTATGAAGC
GCTAGTCCTTCGAACTCAAGCCGCGAGGGCTAACGCTGGAGACACATCTG
TGGCGACGGTCTCCGAAATCGTGGACGGATTCTCGTTCTTGGTGAATGCG
GTGAATGTGGATTTGCTCAAGCCTGTCTGTTTCGGCCTCCAAGAGCTTTT
CGCAGCCGTTCAGGGAGCTACAGCCGCCCGCGAAGAACTGATTGATCTCC
TCGGCTACTGCGTCTCGATAACGAGTATCGTGCTGAACCATGCCCTGCTC
GCCGACCTTCCCGAGCACGTCAAGAGAGCTTTGATGGACGTCGAGGCCGA
GATCAAGGCCATCAACGGCAATGCCAGGTTGTTCGACGCGAAGACCGGCT
GCAGCTTGCCGTGCCGAAGGTTGCGTCTGCACGCCAAGGATCGCGAGGAG
ATCCAAGAGCACAAGGTTCGGCTGCAGGAGATCCTGGATCTCGCGACGAC
GGCCGCCGTGTTCGAC
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