mRNA_E-siliculosus-1a_F_contig12905.1774.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12905.1774.1
Unique NamemRNA_E-siliculosus-1a_F_contig12905.1774.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12905.1774.1 vs. uniprot
Match: A0A6H5JLK3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK3_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 5.060e-52
Identity = 86/111 (77.48%), Postives = 91/111 (81.98%), Query Frame = 1 
Query:    1 KKVVLLWDNCPGHKIKNDDPQIVIIFLPPNVTSVFQPMDMGVLFALKSQYKTEMVMRLAALIEDWDTVR---------------QATMLDVTEILSQKWESFSDQTIVRCW 288
            KKV LLWDNCPGH+IKNDDPQIVIIFLPPNV SVFQPMDMG+LFALK QYKTEMVMRLAALIEDWDT R               Q TMLDVTE+LSQKWESFSDQT++RCW
Sbjct:  164 KKVALLWDNCPGHRIKNDDPQIVIIFLPPNVMSVFQPMDMGILFALKCQYKTEMVMRLAALIEDWDTARARQIRTGCRGLNDAGQPTMLDVTEVLSQKWESFSDQTVIRCW 274
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BLAST of mRNA_E-siliculosus-1a_F_contig12905.1774.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 6.510e-49
Identity = 84/111 (75.68%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:    1 KKVVLLWDNCPGHKIKNDDPQIVIIFLPPNVTSVFQPMDMGVLFALKSQYKTEMVMRLAALIEDWDTVR---------------QATMLDVTEILSQKWESFSDQTIVRCW 288
            KKVVLLWDNCPGHKIKNDDPQI+IIFLPPNVTSVFQPMDMG+LFALK QYKTEMV RLA LI+ WD VR               QATMLDVTEILS+KWESFS QT++RCW
Sbjct:  241 KKVVLLWDNCPGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCW 351
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BLAST of mRNA_E-siliculosus-1a_F_contig12905.1774.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 3.300e-48
Identity = 84/111 (75.68%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:    1 KKVVLLWDNCPGHKIKNDDPQIVIIFLPPNVTSVFQPMDMGVLFALKSQYKTEMVMRLAALIEDWDTVR---------------QATMLDVTEILSQKWESFSDQTIVRCW 288
            KKVVLLWDNCPGHKIKNDDPQI+IIFLPPNVTSVFQPMDMG+LFALK QYKTEMV RLA LI+ WD VR               QATMLDVTEILS+KWESFS QT++RCW
Sbjct:  446 KKVVLLWDNCPGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCW 556
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BLAST of mRNA_E-siliculosus-1a_F_contig12905.1774.1 vs. uniprot
Match: A0A6H5KII5_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII5_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 4.360e-46
Identity = 78/111 (70.27%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:    1 KKVVLLWDNCPGHKIKNDDPQIVIIFLPPNVTSVFQPMDMGVLFALKSQYKTEMVMRLAALIEDWDTVR---------------QATMLDVTEILSQKWESFSDQTIVRCW 288
            +KV L+WDNCPGHKI N+DPQIVIIFLPP VTSVFQPMDMG LF LK  YKTEMV+RL+ +IEDWDTVR               QATMLDV E+L+QKWESFSDQT+VRCW
Sbjct:  187 RKVALIWDNCPGHKIINNDPQIVIIFLPPLVTSVFQPMDMGGLFTLKCHYKTEMVVRLSGVIEDWDTVRARNIPTGCRGLSDAGQATMLDVAEVLTQKWESFSDQTVVRCW 297
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BLAST of mRNA_E-siliculosus-1a_F_contig12905.1774.1 vs. uniprot
Match: A0A6H5KIE7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE7_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 5.440e-45
Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:    1 KKVVLLWDNCPGHKIKNDDPQIVIIFLPPNVTSVFQPMDMGVLFALKSQYKTEMVMRLAALIEDWDTVR---------------QATMLDVTEILSQKWESFSDQTIVRCW 288
            KKV LLWDNCPGHKIK++DPQIVIIFLPP +TSV+QPMDMG+LF LK +YKTEMV RLA LIEDWDTVR               QATMLDVTEI SQKW SF  QT++ CW
Sbjct:   75 KKVALLWDNCPGHKIKSNDPQIVIIFLPPEITSVYQPMDMGILFVLKCRYKTEMVARLADLIEDWDTVRARKFQRGCQGLSDAGQATMLDVTEIGSQKWRSFDVQTVITCW 185
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BLAST of mRNA_E-siliculosus-1a_F_contig12905.1774.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 9.140e-45
Identity = 79/111 (71.17%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:    1 KKVVLLWDNCPGHKIKNDDPQIVIIFLPPNVTSVFQPMDMGVLFALKSQYKTEMVMRLAALIEDWDTVR---------------QATMLDVTEILSQKWESFSDQTIVRCW 288
            KKV LLWDNCPGHKIK++DPQIVIIFLPPNV SV+QPM+MG+LF LK QYKTEMV RLA LIEDWDTVR               QATMLDVTEI SQKW SF  QT++RCW
Sbjct:  278 KKVALLWDNCPGHKIKSNDPQIVIIFLPPNVNSVYQPMNMGILFVLKCQYKTEMVARLADLIEDWDTVRARKIQRGCRGLSDAGQATMLDVTEICSQKWRSFDVQTVIRCW 388
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BLAST of mRNA_E-siliculosus-1a_F_contig12905.1774.1 vs. uniprot
Match: A0A6H5KFG9_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG9_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 4.310e-43
Identity = 77/111 (69.37%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    1 KKVVLLWDNCPGHKIKNDDPQIVIIFLPPNVTSVFQPMDMGVLFALKSQYKTEMVMRLAALIEDWDTVR---------------QATMLDVTEILSQKWESFSDQTIVRCW 288
            +KV L WDNCPGHKI N+DPQIVIIFLPP VTSVFQPMDMG LF LK Q K EMV+RL+ +IEDWDTVR               QAT LDV EIL+QKWESFSDQT+VRCW
Sbjct:  231 RKVTLTWDNCPGHKIINNDPQIVIIFLPPLVTSVFQPMDMGALFTLKCQNKPEMVVRLSDVIEDWDTVRARNIPRGCQGLSDAGQATTLDVAEILTQKWESFSDQTVVRCW 341
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BLAST of mRNA_E-siliculosus-1a_F_contig12905.1774.1 vs. uniprot
Match: A0A6H5KA74_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA74_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.990e-42
Identity = 74/96 (77.08%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 KKVVLLWDNCPGHKIKNDDPQIVIIFLPPNVTSVFQPMDMGVLFALKSQYKTEMVMRLAALIEDWDTVRQATMLDVTEILSQKWESFSDQTIVRCW 288
            KK+ LLWDNCPGH+IKNDDPQIVIIFLPPNVTSVFQPMDMG+LFALK QYKT+M+MR        +   Q TMLDVTEILSQKWESFSDQT++RCW
Sbjct:  527 KKMALLWDNCPGHRIKNDDPQIVIIFLPPNVTSVFQPMDMGILFALKCQYKTKMLMR------GLNDAGQPTMLDVTEILSQKWESFSDQTVIRCW 616
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BLAST of mRNA_E-siliculosus-1a_F_contig12905.1774.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.500e-40
Identity = 72/111 (64.86%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:    1 KKVVLLWDNCPGHKIKNDDPQIVIIFLPPNVTSVFQPMDMGVLFALKSQYKTEMVMRLAALIEDWDTVR---------------QATMLDVTEILSQKWESFSDQTIVRCW 288
            KKV LLWDNCPGHKI ++DPQI I+FLPPNV SV+QPMDMG+LF LK QY+ E + RLA LIEDWDTVR               QAT+LDVTEI SQKW SF  QT++RCW
Sbjct:  414 KKVALLWDNCPGHKINSNDPQIFIMFLPPNVISVYQPMDMGILFVLKCQYRNEKMARLADLIEDWDTVRARKIQRGCQGFSDAGQATVLDVTEICSQKWRSFDVQTVIRCW 524
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BLAST of mRNA_E-siliculosus-1a_F_contig12905.1774.1 vs. uniprot
Match: A0A6H5K0Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y4_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.030e-39
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 KKVVLLWDNCPGHKIKNDDPQIVIIFLPPNVTSVFQPMDMGVLFALKSQYKTEMVMRLAALIEDWDTVRQATMLDVTEILSQKWESFSDQTIVRCW 288
            ++V  LWDNCPGHKIK++DP IVI FLPP V SV+QPMDM +LF LK QYKTEMV RLA L+EDWDT   ATMLDVTEI SQKW SF  QT++RCW
Sbjct:  355 RQVAFLWDNCPGHKIKSNDPHIVINFLPPYVNSVYQPMDMSILFVLKCQYKTEMVARLADLMEDWDT---ATMLDVTEICSQKWRSFDVQTVIRCW 447
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12905.1774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLK3_9PHAE5.060e-5277.48HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JEY2_9PHAE6.510e-4975.68HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JV64_9PHAE3.300e-4875.68HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KII5_9PHAE4.360e-4670.27HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KIE7_9PHAE5.440e-4569.37DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JNS8_9PHAE9.140e-4571.17HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KFG9_9PHAE4.310e-4369.37HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KA74_9PHAE1.990e-4277.08HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JEK6_9PHAE1.500e-4064.86DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K0Y4_9PHAE2.030e-3971.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12905contigE-siliculosus-1a_F_contig12905:5..631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size288
Model size288
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelArthropoda
COG Functional cat.BD
EggNOG OGs38EWM@33154,3BGSJ@33208,3D2I5@33213,42087@6656,KOG3105@1,KOG3105@2759
EggNOG free text desc.DDE superfamily endonuclease
Seed eggNOG ortholog69319.XP_008557915.1
Seed ortholog evalue2.3e-15
Seed ortholog score88.2
Taxonomic scopeArthropoda
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927811.8057086-CDS-E-siliculosus-1a_F_contig12905:4..2091622927811.8057086-CDS-E-siliculosus-1a_F_contig12905:4..209Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12905 5..209 +
1696318690.074255-CDS-E-siliculosus-1a_F_contig12905:4..2091696318690.074255-CDS-E-siliculosus-1a_F_contig12905:4..209Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12905 5..209 +
1622927811.814918-CDS-E-siliculosus-1a_F_contig12905:548..6311622927811.814918-CDS-E-siliculosus-1a_F_contig12905:548..631Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12905 549..631 +
1696318690.091177-CDS-E-siliculosus-1a_F_contig12905:548..6311696318690.091177-CDS-E-siliculosus-1a_F_contig12905:548..631Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12905 549..631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12905.1774.1prot_E-siliculosus-1a_F_contig12905.1774.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12905 5..631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12905.1774.1

>prot_E-siliculosus-1a_F_contig12905.1774.1 ID=prot_E-siliculosus-1a_F_contig12905.1774.1|Name=mRNA_E-siliculosus-1a_F_contig12905.1774.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp
KKVVLLWDNCPGHKIKNDDPQIVIIFLPPNVTSVFQPMDMGVLFALKSQY
KTEMVMRLAALIEDWDTVRQATMLDVTEILSQKWESFSDQTIVRCW
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mRNA from alignment at E-siliculosus-1a_F_contig12905:5..631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12905.1774.1 ID=mRNA_E-siliculosus-1a_F_contig12905.1774.1|Name=mRNA_E-siliculosus-1a_F_contig12905.1774.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=627bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12905:5..631+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAAAAGGTGGTTCTCTTGTGGGACAACTGCCCAGGCCACAAGATCAAGAA
CGACGACCCGCAAATCGTCATCATCTTCCTGCCCCCCAACGTCACGTCCG
TCTTTCAGCCTATGGACATGGGGGTCCTGTTTGCCCTCAAGAGCCAGTAC
AAGACGGAGATGGTGATGAGGCTGGCGGCCCTTATCGAGGACTGGGACAC
AGTACGTGCGCGCAAAATCCGAAGGTAAAGACTGCTGTGTTTTTTGTTTT
TTGGGGGCGGCGAAAAAGTGATTATTTTTTGTGACTGCAGGTTCCGTTTT
TTTTTTCTTGTTAGGCGAGTGACAAGCTGTTGCATGTACTTTACGGTTTT
GCAGCTGTAGACGAGTCCCATGCGGCAGTAGTACTGCAACAGAGTCTCCG
ACAAATATATGCCTGAAGTACACCACATCCAGCGAAATCCACTCTCTCTC
CTGGTGATTGAAAACTGTTGATCATTGCGTCTTTTTTTTACTGTGTTCCT
TGCATCTTTGTTTTGCAGGGGCTGCCGGGGCCTGAGCGACGCAGGCCAGG
CAACAATGCTGGATGTGACGGAGATCCTTTCGCAGAAGTGGGAGAGCTTC
TCGGACCAGACTATCGTCAGGTGCTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12905:5..631+

>mRNA_E-siliculosus-1a_F_contig12905.1774.1 ID=mRNA_E-siliculosus-1a_F_contig12905.1774.1|Name=mRNA_E-siliculosus-1a_F_contig12905.1774.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12905:5..631+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAAAAGGTGGTTCTCTTGTGGGACAACTGCCCAGGCCACAAGATCAAGAA
CGACGACCCGCAAATCGTCATCATCTTCCTGCCCCCCAACGTCACGTCCG
TCTTTCAGCCTATGGACATGGGGGTCCTGTTTGCCCTCAAGAGCCAGTAC
AAGACGGAGATGGTGATGAGGCTGGCGGCCCTTATCGAGGACTGGGACAC
AGTACAAAAAGGTGGTTCTCTTGTGGGACAACTGCCCAGGCCACAAGATC
AAGAACGACGACCCGCAAATCGTCATCATCTTCCTGCCCCCCAACGTCAC
GTCCGTCTTTCAGCCTATGGACATGGGGGTCCTGTTTGCCCTCAAGAGCC
AGTACAAGACGGAGATGGTGATGAGGCTGGCGGCCCTTATCGAGGACTGG
GACACAGTACGCCAGGCAACAATGCTGGATGTGACGGAGATCCTTTCGCA
GAAGTGGGAGAGCTTCTCGGACCAGACTATCGTCAGGTGCTGGGCCAGGC
AACAATGCTGGATGTGACGGAGATCCTTTCGCAGAAGTGGGAGAGCTTCT
CGGACCAGACTATCGTCAGGTGCTGG
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