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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1758.1 vs. uniprot
Match: D7G1Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q7_ECTSI) HSP 1 Score: 473 bits (1217), Expect = 1.760e-165 Identity = 286/332 (86.14%), Postives = 293/332 (88.25%), Query Frame = 1
Query: 1 TTDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLQAYQVKQMAQQLHHGTTQQTDAXXXXXXXXRLAESAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLEKAKRERKSHDGRVQRLEKSIATSNARAVELDKELQLQRRSFTRVLKSDRDAYEARTEAAEANAERRGRELKRLMTWVEKAESKYAEALRKLSAQAEDLGAANLGDLEGFAKDMSEQVSKLRQGVADSMRSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRKTGSKGDGVSVTDPDASKASSDGGERQDRGHVDDDSLERPMAKV 996
T DSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLQAYQVKQMAQQLHHG +Q+TD R AE AAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLEKAKRERKSHDG+VQRLEKSIATSN RAVELDKELQLQR+SFTRVLKSDRD YE RTEAAEANAERRGRELKRLMTWVEKAESK+AEALRKLSAQAEDLGAANLGDLEGFAKDMSE VSKLRQGVADSMRSR XXXXXXXXXXXXXXXXX TRKTGSKGDG SVTD D SKA SDGGERQD+GHVDD+SLERPMAKV
Sbjct: 7 TIDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLQAYQVKQMAQQLHHGHSQETDVHEQQQQQ-RFAEGAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLEKAKRERKSHDGKVQRLEKSIATSNTRAVELDKELQLQRKSFTRVLKSDRDVYETRTEAAEANAERRGRELKRLMTWVEKAESKFAEALRKLSAQAEDLGAANLGDLEGFAKDMSEDVSKLRQGVADSMRSRXXXXXXXXXXXXXXXXXXENDKGKAKEKTKKTK--TRKTGSKGDGASVTDADDSKARSDGGERQDKGHVDDNSLERPMAKV 335
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1758.1 vs. uniprot
Match: A0A6H5L251_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L251_9PHAE) HSP 1 Score: 404 bits (1039), Expect = 9.090e-139 Identity = 225/252 (89.29%), Postives = 234/252 (92.86%), Query Frame = 1
Query: 1 TTDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLQAYQVKQMAQQLHHGTTQQTDAXXXXXXXXRLAESAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLEKAKRERKSHDGRVQRLEKSIATSNARAVELDKELQLQRRSFTRVLKSDRDAYEARTEAAEANAERRGRELKRLMTWVEKAESKYAEALRKLSAQAEDLGAANLGDLEGFAKDMSEQVSKLRQGVADSMRSRS 756
TTDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANL AYQV+QMAQQLHHG T++TD RLAESAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLL+KAKRERKSHDG+VQRLEKSIATSNARAVEL QRRSFTRVLKSDRD YEARTEAAEANAERRG+ELKRLMTWVEKAESKYAEALRKLSAQA+DLGAANLGDLEGFAKDMSE+VSKLRQGVADS+RSRS
Sbjct: 39 TTDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLPAYQVQQMAQQLHHGPTEETDVHLQQQQ--RLAESAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLQKAKRERKSHDGKVQRLEKSIATSNARAVEL------QRRSFTRVLKSDRDVYEARTEAAEANAERRGQELKRLMTWVEKAESKYAEALRKLSAQADDLGAANLGDLEGFAKDMSEEVSKLRQGVADSVRSRS 282
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 999 |
| Model size | 999 |
| Exons | 6 |
| Ec32 ortholog | Ec-11_000050.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1288.1758.1 >prot_E-siliculosus-1a_F_contig1288.1758.1 ID=prot_E-siliculosus-1a_F_contig1288.1758.1|Name=mRNA_E-siliculosus-1a_F_contig1288.1758.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=333bp
TTDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLQAYQVKQMAQ
QLHHGTTQQTDAHQQQQQQQRLAESAAPLEVRHLHGILQWLHQAKADMVE
NDRSKVQLEGDVRLLYNLLEKAKRERKSHDGRVQRLEKSIATSNARAVEL
DKELQLQRRSFTRVLKSDRDAYEARTEAAEANAERRGRELKRLMTWVEKA
ESKYAEALRKLSAQAEDLGAANLGDLEGFAKDMSEQVSKLRQGVADSMRS
RSRSRSKSKGRSCGREEGTQEGHDKGKDKEKKKKNKTRKTGSKGDGVSVT
DPDASKASSDGGERQDRGHVDDDSLERPMAKV* back to topmRNA from alignment at E-siliculosus-1a_F_contig1288:504..4148+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1288.1758.1 ID=mRNA_E-siliculosus-1a_F_contig1288.1758.1|Name=mRNA_E-siliculosus-1a_F_contig1288.1758.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3645bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1288:504..4148+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAACAGATTCGGACGAAAGGACCGAGCTTGATGCCCTCCGGCTAGAAAA
TGACACGCTGAGAAGACACCTTGGAAGGCTGGAAGACAAAGTTCAACGAG
CGGAGGAGAGTGCTAACCTGCAGGCGTACCAGGTAAAACAGATGGCCCAG
CAGTTGCATCATGGGACTACGCAGCAGACAGACGCCCATCAGCAGCAGCA
GCAGCAGCAGAGGTTGGCAGAAAGTGCTGCCCCTCTCGAGGTCCGCCACC
TTCATGGCATCCTTCAATGGCTTCACGTGAGTTGCATCAACGAGACGGTT
GTCTCGACAAGCGTTCTTACCAATTCGGTGTAGAGTGTTTCGCGCCTTTG
TTCGGGAGATACCCTCGTAAATTTTGGAGGGCCAAAGCTGGGATTGAAAT
ACCACCCGCCACTCTGCTGTTGAGAGAGCGCTTGCGCATCAATTTTGGCA
ACCCGATTCCGGTGTTGAAAATGATGTTTCTGGGCCCCCCTCACGAGGTG
GAACGTCAAGGCGTGCGAACAATGGGAGGGAGGTCCTTCAGGAGTATGAT
CTCGGCTCTGGCTCACCAAAAGTTTCCATGAGCTTTTAGTTTCGGGGTCC
AGAATACAGAGTATGGGCAAACGTGAAACACACGCGAGGCCACTTCTCTT
CTCCATCATATGCGTTTAACGCCAAGCAAAGTGTACCATTTTGGTTTACA
GCTTTCACGTAAAGCCTTTTACAGTGAAGGCTTGTACCGAGCGCAACGAG
GATATGTAGTTACTCTGCAAATGTCCATCGTGGAAAGGCCAATGTTCATG
GTGGATATCAAGGCTGAACCCTAGCGGTGTATCGGTGACTATCGGTTGGA
AATAGCTCTGGACTATTTTCAAGTCTAGCGAACAGTACTATTGGTGCCAC
CGAATGTTTTTCCTATTACCATTTCTCTGCGAAAGTCGCCTCTCTATATG
TTGTAGCGGGTTCTCGCCGACGGACAGCTGAATCTCGGTTGAAGGGGGCA
GGAGTGGGCCGGATCCCCCAAAATTTGCAAAGGTATCTCGTGACCCCAGA
AATTCTCTGTCCGACCGCCATCAAAGGTCGAAAACAGTGCGTTCATGACC
CGGCAACAGCAGTAGTTACGTTTCCCGCATTGGCGTGCTGTCGCCTACGT
TCTATCGTGTACCATGAACTGAGATGGACCTACACACTTACTTTTCCCTT
CATCTTCGGGGCCATTTGGATACGTTCAAGGACCCCTTCATTTAGAGATG
TGATTGGATGTTTCCCTAGCCCCAACTCCCAACATGACCATTTGTCCAAC
TCGAAACCACCCGAGGCAGCAAGCGAAGGCGGACATGGTGGAGAATGACC
GAAGCAAAGTCCAGCTGGAGGGCGACGTGCGGCTGTTGTACAACCTCTTG
GAGAAGGCAAAGCGAGAAAGGAAGTCACACGACGGGAGGGTCCAACGCCT
CGAGAAATCCATCGCGACCTCAAACGCCAGAGCAGTGGAGGTAAACTCGA
TGGCCACAGCACACTACCCCCTCCTCCTTGCGATTGGTGCCTCCCATGTT
CAAGCGAAGAGTACAGTTTTATCGTCGACCGCGTGACCATTGTCGATGTA
CCCGCTGGCTGGATAGACAAAGCCATGGGAGTATCTCGGGAACATATTAT
TGGAGGAGTTGCAGCACACAGCGTCATAGAACGGCATTTTTCAGCGCTAC
CACTTTCATTTTTACACCCCTCGCTGTCAGCCATGAGTCCGCAGCCACCG
AAAAGAGCCTTCAAACACGACCACAATCAACCCCCCTTCTCACCCGGCAT
ATTGTGATCGCACCTTATCCGACAAAAAAGCTGGACAAGGAGCTACAGCT
CCAGCGGAGGTCGTTCACGCGAGTCCTCAAGTCGGACAGAGACGCTTACG
AGGCCAGGACTGAAGCGGCTGAGGCTAACGCAGAGCGCAGGTAAGCGGTA
AGCCACTCTGAGTGGATCCTCGAGATTTTCTCCGGGTGTAGCCGCGGGTT
TCCGCGTGCGCTACCATGAACCTTTACCTTCCTTTGACCGTTTGACGGGC
TGGATGCATGCTCAATTTTACCAACGCTGTAAGGCGCGAGAGTCAAGACA
ACGCCTCAGGTGTTTAGGTACCCATTAGACGTCGCTCAGCTGCTGAACAA
TTAGTGGCAACTGGGAGAGCATACATGCTGTAGCAAAGAGATTCACGTGA
GCCGACAGTCTGAACGTCCCGGCGCTGCCCCTTTACCACGTGCCACATGT
CCGATTGCCACATTGTTGCACGAAACGCGAATCGTAGGGACGGGTGCGAG
ACTTGTCGTGCTGCAACACGGCCTTCGGAGCGTGTTTTTTTTATGATCCC
TTCTGCTCACGTTTGTGTTCAGCGCGTGCCGCCTGGTCGTCACCTCATAG
TGCCGCTGAATAGTCTTGAGCGTCCCGAGTTGCGACGCTTCGCTGATCCA
CGTACATGTACAGTCGTCCCTTTGCCAAGGACACACATGATTTTTCGGTA
GAACAGCAGTTGCCCTTAAGCCGAGCAAGTGTCCTTAAGATTGATACCCC
CCCTTACGTTATACATCTTGAGGGACACCGCGCCCGTGAACAAAAGATGT
CTTAACCGGGGGAGTGTCCTCAATATTGGTATCTTTAAGCGAGGGACGAC
TGTATTGAGGTAATAACCCAGCCGAATGGTCCAATGTGGCTGTAACCGAG
GCGTCCTTCGCAATGGCAACCGCAGGGGCCGAGAACTGAAGCGCCTGATG
ACCTGGGTAGAGAAAGCGGAGTCCAAATACGCCGAGGTGATGACAGTCTG
CACGAGACGTGCTTCGAGTTTCTCACTCGCACTAGTACGGTGAATGCACG
CTTCGATGTTGCGGAAGGTTGATACGAGTATGTATTCGTCTTCAGCCACA
CCTGAGATAGCCGTATGTTGCGGTGGTAGGTGGTTCCATGGGAACAAGCC
TTCGATATGCTAGGAGCGGCAAAAACAACAGCATCAAAGTCAACAACATC
AACCACAACCGCATCGAACACTATGCCGCAGGCGCTACGCAAGTTGTCCG
CACAGGCGGAGGATTTGGGAGCAGCTAACCTCGGAGATCTAGAGGGCTTC
GCCAAAGATATGTCGGAACAGGTCTCCAAACTACGACAGGTGGGCGAACA
AGCAGAAATTCTGGGGGTACTGTACACCCGTTTCTGTACTTGAGTTACCA
CGTTTAGTCCATGCTGGCAATCTCAGTTCTAGCACAACACCACTTTGAAC
GTCTCCGTGATCCAACAAGTGGCATGCGTATGAGGCAGAGTTGGATCGTG
ACGCGTTTGCAATGCATGACGTTCCTGCCGGCTCGTCGATGAATGAAGGC
GTTTATTGTAACGTCCCGACAGGGTGTGGCAGATTCCATGCGATCGAGAT
CGAGATCGAGATCGAAGTCGAAGGGCCGGTCCTGCGGGCGGGAAGAGGGC
ACTCAAGAGGGGCACGACAAGGGTAAAGATAAGGAAAAGAAGAAAAAGAA
CAAGACCCGAAAAACGGGGAGCAAGGGTGATGGTGTCTCGGTTACTGACC
CTGACGCCTCCAAGGCTAGTTCTGACGGTGGAGAAAGGCAGGACAGGGGA
CACGTCGACGACGATAGTCTCGAGCGGCCGATGGCGAAGGTCTAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1288:504..4148+ >mRNA_E-siliculosus-1a_F_contig1288.1758.1 ID=mRNA_E-siliculosus-1a_F_contig1288.1758.1|Name=mRNA_E-siliculosus-1a_F_contig1288.1758.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1998bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1288:504..4148+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAACAGATTCGGACGAAAGGACCGAGCTTGATGCCCTCCGGCTAGAAAA
TGACACGCTGAGAAGACACCTTGGAAGGCTGGAAGACAAAGTTCAACGAG
CGGAGGAGAGTGCTAACCTGCAGGCGTACCAGGTAAAACAGATGGCCCAG
CAGTTGCATCATGGGACTACGCAGCAGACAGACGCCCATCAGCAGCAGCA
GCAGCAGCAGAGGTTGGCAGAAAGTGCTGCCCCTCTCGAGGTCCGCCACC
TTCATGGCATCCTTCAATGGCTTCACACAACAGATTCGGACGAAAGGACC
GAGCTTGATGCCCTCCGGCTAGAAAATGACACGCTGAGAAGACACCTTGG
AAGGCTGGAAGACAAAGTTCAACGAGCGGAGGAGAGTGCTAACCTGCAGG
CGTACCAGGTAAAACAGATGGCCCAGCAGTTGCATCATGGGACTACGCAG
CAGACAGACGCCCATCAGCAGCAGCAGCAGCAGCAGAGGTTGGCAGAAAG
TGCTGCCCCTCTCGAGGTCCGCCACCTTCATGGCATCCTTCAATGGCTTC
ACCAAGCGAAGGCGGACATGGTGGAGAATGACCGAAGCAAAGTCCAGCTG
GAGGGCGACGTGCGGCTGTTGTACAACCTCTTGGAGAAGGCAAAGCGAGA
AAGGAAGTCACACGACGGGAGGGTCCAACGCCTCGAGAAATCCATCGCGA
CCTCAAACGCCAGAGCAGTGGAGCAAGCGAAGGCGGACATGGTGGAGAAT
GACCGAAGCAAAGTCCAGCTGGAGGGCGACGTGCGGCTGTTGTACAACCT
CTTGGAGAAGGCAAAGCGAGAAAGGAAGTCACACGACGGGAGGGTCCAAC
GCCTCGAGAAATCCATCGCGACCTCAAACGCCAGAGCAGTGGAGCTGGAC
AAGGAGCTACAGCTCCAGCGGAGGTCGTTCACGCGAGTCCTCAAGTCGGA
CAGAGACGCTTACGAGGCCAGGACTGAAGCGGCTGAGGCTAACGCAGAGC
GCAGCTGGACAAGGAGCTACAGCTCCAGCGGAGGTCGTTCACGCGAGTCC
TCAAGTCGGACAGAGACGCTTACGAGGCCAGGACTGAAGCGGCTGAGGCT
AACGCAGAGCGCAGGGGCCGAGAACTGAAGCGCCTGATGACCTGGGTAGA
GAAAGCGGAGTCCAAATACGCCGAGGGGCCGAGAACTGAAGCGCCTGATG
ACCTGGGTAGAGAAAGCGGAGTCCAAATACGCCGAGGCGCTACGCAAGTT
GTCCGCACAGGCGGAGGATTTGGGAGCAGCTAACCTCGGAGATCTAGAGG
GCTTCGCCAAAGATATGTCGGAACAGGTCTCCAAACTACGACAGGCGCTA
CGCAAGTTGTCCGCACAGGCGGAGGATTTGGGAGCAGCTAACCTCGGAGA
TCTAGAGGGCTTCGCCAAAGATATGTCGGAACAGGTCTCCAAACTACGAC
AGGGTGTGGCAGATTCCATGCGATCGAGATCGAGATCGAGATCGAAGTCG
AAGGGCCGGTCCTGCGGGCGGGAAGAGGGCACTCAAGAGGGGCACGACAA
GGGTAAAGATAAGGAAAAGAAGAAAAAGAACAAGACCCGAAAAACGGGGA
GCAAGGGTGATGGTGTCTCGGTTACTGACCCTGACGCCTCCAAGGCTAGT
TCTGACGGTGGAGAAAGGCAGGACAGGGGACACGTCGACGACGATAGTCT
CGAGCGGCCGATGGCGAAGGTCTAGGGTGTGGCAGATTCCATGCGATCGA
GATCGAGATCGAGATCGAAGTCGAAGGGCCGGTCCTGCGGGCGGGAAGAG
GGCACTCAAGAGGGGCACGACAAGGGTAAAGATAAGGAAAAGAAGAAAAA
GAACAAGACCCGAAAAACGGGGAGCAAGGGTGATGGTGTCTCGGTTACTG
ACCCTGACGCCTCCAAGGCTAGTTCTGACGGTGGAGAAAGGCAGGACAGG
GGACACGTCGACGACGATAGTCTCGAGCGGCCGATGGCGAAGGTCTAG back to top
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