mRNA_E-siliculosus-1a_F_contig1286.1748.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1286.1748.1
Unique NamemRNA_E-siliculosus-1a_F_contig1286.1748.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1286.1748.1 vs. uniprot
Match: D7G366_ECTSI (F420_oxidored domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G366_ECTSI)

HSP 1 Score: 735 bits (1897), Expect = 1.820e-266
Identity = 372/414 (89.86%), Postives = 386/414 (93.24%), Query Frame = 1
Query:    1 MASTMDGFTRTWRCLDRLNVEDELVQDLTNPNFVLRNVDLAFSCCGQTRAVEEGYLRRKEVQRLICSQCLFVAGFLPPMFKQMAGIDKKSKRMAFGGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLGDNGTASALVMSTLAGISEGSLKRVLGTENVIQARVDIARLDVMETMGNRVLPAAGPTSRAGQAERSNGIRDQCDGDAVKGDSDDWGCGDIATWRAVHERAAWHFIPDARAVGQIVDTIEYFYVEQGLEPVQAHQACRDRLLPSVEPAALGTRSQQRATLPQILSSPGKARCEHRFNQPAAPNLQMKEGGDKAGGERWTPQSNWPPPDLVLMEDVYEQMLRVPYGDAVRESGYQSEL 1242
            MASTMDGFTRTWRC+DRLNVEDELVQDLT+PNFVLRNVDLAFSCCGQT AVEEGYLRRKEVQRLICSQCLFVAGFLPPMFKQMAGIDKKSKRMA GGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLG+NGTASALVMSTLAGISEGSLKRVLGTEN+IQARVDIARLDVMETMGN+ LPAAGPTSR GQAERSNGI+DQCDGDA+KGDSDDWGCGDIATWRAVHERA+WHF PDARAVG+I++TIE FYVEQGLEPVQA QACRD LLPSVEPAALGTRS QRA LP+ LSSP +         P  PNLQMKE GDK G ERWTP+S WPPPDLVLMEDVYEQMLRVPYGDAVRESGYQS L
Sbjct:    1 MASTMDGFTRTWRCMDRLNVEDELVQDLTDPNFVLRNVDLAFSCCGQTPAVEEGYLRRKEVQRLICSQCLFVAGFLPPMFKQMAGIDKKSKRMAVGGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLGENGTASALVMSTLAGISEGSLKRVLGTENLIQARVDIARLDVMETMGNKGLPAAGPTSRVGQAERSNGIKDQCDGDAMKGDSDDWGCGDIATWRAVHERASWHFTPDARAVGKIIETIESFYVEQGLEPVQARQACRDWLLPSVEPAALGTRSHQRANLPRTLSSPVQP-------HPLHPNLQMKEDGDKPGCERWTPRSYWPPPDLVLMEDVYEQMLRVPYGDAVRESGYQSGL 407          
BLAST of mRNA_E-siliculosus-1a_F_contig1286.1748.1 vs. uniprot
Match: D7G368_ECTSI (F420_oxidored domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G368_ECTSI)

HSP 1 Score: 482 bits (1240), Expect = 4.650e-168
Identity = 245/270 (90.74%), Postives = 257/270 (95.19%), Query Frame = 1
Query:  235 MFKQMAGIDKKSKRMAFGGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLGDNGTASALVMSTLAGISEGSLKRVLGTENVIQARVDIARLDVMETMGNRVLPAAGPTSRAGQAERSNGIRDQCDGDAVKGDSDDWGCGDIATWRAVHERAAWHFIPDARAVGQIVDTIEYFYVEQGLEPVQAHQACRDRLLPSVEPAALGTRSQQRATLPQILSSPGKAR 1044
            MFKQMAGIDKKSKRMA GGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLG+NGTASALVMS LAGISEGSLKRVLGTEN+IQARVDIARLDVMETMGN+ LPAAGPTSR GQAERSNGI+DQCDGDA+KGDSDDWGCGDIATWRAVHERA+WHF PDARA+G+I++TIE FYVEQGLEPVQA QACRDRLLPSVEPA LGTRS QRA LP+ LSSP + R
Sbjct:    1 MFKQMAGIDKKSKRMAVGGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLGENGTASALVMSNLAGISEGSLKRVLGTENLIQARVDIARLDVMETMGNKGLPAAGPTSRVGQAERSNGIKDQCDGDAMKGDSDDWGCGDIATWRAVHERASWHFTPDARAIGKIIETIESFYVEQGLEPVQARQACRDRLLPSVEPAVLGTRSHQRANLPRTLSSPDEGR 270          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1286.1748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G366_ECTSI1.820e-26689.86F420_oxidored domain-containing protein n=1 Tax=Ec... [more]
D7G368_ECTSI4.650e-16890.74F420_oxidored domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1286contigE-siliculosus-1a_F_contig1286:10532..17042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1245
Model size1245
Exons10
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1286.1748.1prot_E-siliculosus-1a_F_contig1286.1748.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1286 10532..17042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927806.4201136-CDS-E-siliculosus-1a_F_contig1286:10531..105911622927806.4201136-CDS-E-siliculosus-1a_F_contig1286:10531..10591Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 10532..10591 -
1696318687.7528157-CDS-E-siliculosus-1a_F_contig1286:10531..105911696318687.7528157-CDS-E-siliculosus-1a_F_contig1286:10531..10591Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 10532..10591 -
1622927806.4329474-CDS-E-siliculosus-1a_F_contig1286:11616..117451622927806.4329474-CDS-E-siliculosus-1a_F_contig1286:11616..11745Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 11617..11745 -
1696318687.7601552-CDS-E-siliculosus-1a_F_contig1286:11616..117451696318687.7601552-CDS-E-siliculosus-1a_F_contig1286:11616..11745Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 11617..11745 -
1622927806.444941-CDS-E-siliculosus-1a_F_contig1286:12736..128831622927806.444941-CDS-E-siliculosus-1a_F_contig1286:12736..12883Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 12737..12883 -
1696318687.7674537-CDS-E-siliculosus-1a_F_contig1286:12736..128831696318687.7674537-CDS-E-siliculosus-1a_F_contig1286:12736..12883Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 12737..12883 -
1622927806.4605546-CDS-E-siliculosus-1a_F_contig1286:13180..134171622927806.4605546-CDS-E-siliculosus-1a_F_contig1286:13180..13417Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 13181..13417 -
1696318687.7751596-CDS-E-siliculosus-1a_F_contig1286:13180..134171696318687.7751596-CDS-E-siliculosus-1a_F_contig1286:13180..13417Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 13181..13417 -
1622927806.4743507-CDS-E-siliculosus-1a_F_contig1286:13798..139391622927806.4743507-CDS-E-siliculosus-1a_F_contig1286:13798..13939Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 13799..13939 -
1696318687.782522-CDS-E-siliculosus-1a_F_contig1286:13798..139391696318687.782522-CDS-E-siliculosus-1a_F_contig1286:13798..13939Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 13799..13939 -
1622927806.4929278-CDS-E-siliculosus-1a_F_contig1286:14605..147131622927806.4929278-CDS-E-siliculosus-1a_F_contig1286:14605..14713Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 14606..14713 -
1696318687.789692-CDS-E-siliculosus-1a_F_contig1286:14605..147131696318687.789692-CDS-E-siliculosus-1a_F_contig1286:14605..14713Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 14606..14713 -
1622927806.5075612-CDS-E-siliculosus-1a_F_contig1286:15202..152961622927806.5075612-CDS-E-siliculosus-1a_F_contig1286:15202..15296Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 15203..15296 -
1696318687.7999513-CDS-E-siliculosus-1a_F_contig1286:15202..152961696318687.7999513-CDS-E-siliculosus-1a_F_contig1286:15202..15296Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 15203..15296 -
1622927806.5214322-CDS-E-siliculosus-1a_F_contig1286:15651..157941622927806.5214322-CDS-E-siliculosus-1a_F_contig1286:15651..15794Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 15652..15794 -
1696318687.807325-CDS-E-siliculosus-1a_F_contig1286:15651..157941696318687.807325-CDS-E-siliculosus-1a_F_contig1286:15651..15794Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 15652..15794 -
1622927806.5367804-CDS-E-siliculosus-1a_F_contig1286:16245..163531622927806.5367804-CDS-E-siliculosus-1a_F_contig1286:16245..16353Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 16246..16353 -
1696318687.8146026-CDS-E-siliculosus-1a_F_contig1286:16245..163531696318687.8146026-CDS-E-siliculosus-1a_F_contig1286:16245..16353Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 16246..16353 -
1622927806.5503283-CDS-E-siliculosus-1a_F_contig1286:16964..170421622927806.5503283-CDS-E-siliculosus-1a_F_contig1286:16964..17042Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 16965..17042 -
1696318687.822087-CDS-E-siliculosus-1a_F_contig1286:16964..170421696318687.822087-CDS-E-siliculosus-1a_F_contig1286:16964..17042Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 16965..17042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1286.1748.1

>prot_E-siliculosus-1a_F_contig1286.1748.1 ID=prot_E-siliculosus-1a_F_contig1286.1748.1|Name=mRNA_E-siliculosus-1a_F_contig1286.1748.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=415bp
MASTMDGFTRTWRCLDRLNVEDELVQDLTNPNFVLRNVDLAFSCCGQTRA
VEEGYLRRKEVQRLICSQCLFVAGFLPPMFKQMAGIDKKSKRMAFGGPLI
GIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFED
VSLLVRAVRLVIVAVGPQHARQVGSTLGDNGTASALVMSTLAGISEGSLK
RVLGTENVIQARVDIARLDVMETMGNRVLPAAGPTSRAGQAERSNGIRDQ
CDGDAVKGDSDDWGCGDIATWRAVHERAAWHFIPDARAVGQIVDTIEYFY
VEQGLEPVQAHQACRDRLLPSVEPAALGTRSQQRATLPQILSSPGKARCE
HRFNQPAAPNLQMKEGGDKAGGERWTPQSNWPPPDLVLMEDVYEQMLRVP
YGDAVRESGYQSEL*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1286:10532..17042-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1286.1748.1 ID=mRNA_E-siliculosus-1a_F_contig1286.1748.1|Name=mRNA_E-siliculosus-1a_F_contig1286.1748.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6511bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1286:10532..17042- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGAGTACCATGGATGGATTCACACGCACGTGGAGATGCCTGGATCG CTTGAACGTGGAAGACGAGCTCGTTCAGGTGTGTCATGGTGCCCCCATGC CGGTGTCGCCTAGAGACTATATTGATGTGGGAGGTTATCTACCGCAGCAA AGCATCGGGGGGCATGCTCATATTCAGGCAGGCTATGTTGAGTTTCCCAT CGAAACGGTCTTCCTTTCTATGTTGGGCAACATACCGTGCGCGGTAGTCC ACATTTTCGCGGTACAGTACATCGATTGACCGTCATCCACTTGAGCGAAT TCTGTCGAACTGATCGAGGGCGAACGGAATTTAGTCGAAGATTCCTCTGA AAGTCATTGTCGATGTTAAAACCAGAGAGTGACCCCTTCCTTTCTGCCGA GCAACATGTTTCACATCGCATTTGCACAATAGTCTAAATAGTTATGACAG TTTCGACGAAGCGTGATGATGTCTATCCAGTTCCGCTGTGTGTGGAAACA TCTCATTCACCGGGTTCTGTCTCCTCGATAGCCAGGGGTCCATCGCTACA GATATCAATATAAAGTATAGATGAAAGGGTTGACATCATTTTTCTTTGAT CGTGAAGCACCGCCCCCTTAAAGGGTCGATTTGTGGGCTTATACCGCACC TGCCTATACCACCAATCGCGCCGTTGTTGTCACACCCAGGACCTTACGAA TCCAAACTTCGTTTTGAGAAATGTCGACCTGGCGTTTTCCTGCTGTGGCC AGACCCGTGCAGTGGAGGAGGGCTACCTCCGACGGAAGGAAGTGCAGGTG GCCGGGCTTCCTCACATGAAATTATTTATGTGGCGATTCTTGCAACAACA TCTCCTCGAGTGACACGAATTCCGTCCTCCAGCCGCAATATTTAGCACAC CTACCGCTGACGACTCAAAAACACGACTTCATTGTAACTTTCGTCCAAAG GCCTCCTTGGACCGCCGGTGAAAACCTGACATACGCCGTTCGCTGCTCTC GCGGTGTTTGTTCCGTGTCTCGGCCAAAGCTCGGGTATTTGCCCCTATGC CGCACGATGGACAACCAAGTTCAATTTCTTTCTTTCAACATCCCGAGACT GTTGTTCCTGTCCGGTGTGATGGTCGCGGCACTATGCGCAATCCACCATA TGTACGAAAATGATCACACATATGCCGCATCATGACCGAACGATCCGACG TACGCCCGACGCCCGCTTTGCCCGTCATCATCGTTTACGTGTTTTCAGAG GTTGATTTGTTCGCAGTGCCTGTTCGTGGCGGGGTTCCTTCCTCCCATGT TCAAGCAAATGGCCGGTATCGACAAGAAGTCCAAAAGGATGGCTTTCGGC GGCCCGCTGATCGGAATCGTCGGGGCGGGTGGCCAACTAGGGTGAGTAAG GCCAAACTTCAATCCCTACAATAGAAGAGCATCCGGTGCAGCACTAACAC AAGACCAGAATCCATGACAGCCGAAGTAGACGTTCTGGAGGATTCTGCAA TCCCTACTGCCATGGGGCCCGACCGACGGACGGAGGCAAGTTAAACACAA CAGTGGTTTGGGAACCCGAAAATCGCGTAAGAAAGCGAAGGAACTGCAGA CTTCCCTTCACATGAAAATTTGTTTTTGGCCAGTTATCCCCTTCTCTTTG GAAACAACTGTGTGTACAAGCATCCCGTATCAACCCCCCCGCCGTCTTTT CCCGAACTCTTCCATTGCACCCTCGGATGCGCTAACCCTCGTGAAGATCG GCTATAGTCCAGACGTTTCTTGACTACGGCTGGAAGCCTTTCCGTTTGGC CGTGTCTGGCAGGGGCCAGAAAAAACTCCGCAAGTTTGAGGTGGGTGATT GGATTTGTGGTGCTGCTGAACTACTGCTGTACTTAATGAGTGTTCTCATT CCTCGTGATGCTCGCGTTGTTTGACGGGCCTGTGTTCGCTAGTCGAAGGA GATGGCGCACGACCATACCCGACGATGAGTCAAGAATTATGAATTTTTTG AATGTATTCACGCCATGGAAAGTTGTCTGTTCGAAAGATTGTTACACCAG ATGGAGCGGAATTTGCTGGGATAGAGAACCTAGCGGGGAGGAATGCCGCA CAGCTGTGGGCACCATGTTTCTACGTACGTTCTCCGGCGCAACTCGCTGG ACCTTTTTGTGTCAACCCGGGACTGGTTTCACTCGGTTGAAGCTACAAAC TTCGTTTCCCTGCTGTTTCACCATTCTTTATCCGCGAGAGGCTTCGGAGC CGGTTCCAAAGGAACGGTCTCATTTCAACACACGACCCGCTTCAACCGGA TGTCCAATCGTGCGCGACTCCTCTGCCAGGCGCTAGGTGTCGGTGTGTTT GAAGACGTGTCGCTGCTGGTCCGTGCGGTGCGGTTGGTCATAGTGGCCGT CGGACCCCAGCACGCTAGACAAGTCGGCTCGACCCTCGTGAGTATCGCGT TCCATGGTAGTAGAATTGCTTCTGGATAGGATCGGGTCCCGTTTGTCGGT GTTGCGCCTGTACGCTGAACTACATATCAAGACCGTTTTTGGAGTCACGT CTCGTGTTGGTGGATGTTTCGTGCAGGGTTTGGGCGCTACGGCTCGTGTT AAAGGGCCTCAAGACCGATCGTTTAGTATTCGGTTTGCCGCTGTGCCCAC GAAAACGACGGGAGGTTTTACTAGCGTTGTTCTGGGAGAATTCTTGGAAG TTCGGCGATATTGTAGTTTTCGTTCCACTCCGCCATTTTTCATTTCGTGA CTACATTGCATCCTGCATTGCATGTCCGTTGGTTGTCGCCTATTGTCGCG TCAAAACGCGATTTCATACGAATTATCAAGCACTGGCTTACCATTTCTCT CACAATATCTCCACACAAACGTGGAAAGAAAATCGCCATTCCCGCTTTCT CCCAAAAATGCTGGGACTCGACGTTCAAAGAGGCGAAGAAACGGCCCAGT CCTTCCCACCAAAACAAAGGAAGACAAGCAACGCATCAGTAAATCGCAAA AACCCTTAACCAACGCGTAATCTTCCACCTGTGTCACCCCGGCCGGTTAG TCCACACTTACGTCCGGAGTACATGAGATGATAAATCGCAAACGGATACG TAGGGAGATAATGGTACGGCATCAGCTTTGGTCATGAGCACCCTGGCGGG CATCAGCGAGGGGAGCCTAAAACGAGTCTTGGGAACGGAGAATGTAATTC AGGCAAGGGTGGACATCGCTCGGCTTGACGTCATGGAAACGATGGTGAGT GGATGGCCGACGTAGATTTGTGAACGCTTCTGGATCGGTAGTTGGAAGCA CAATAGTACAGCAAGGGATGTCAGGCCACCGTATTGAACGTTTGATTTGG TGTTAGTGCCGGGAGCAGGCGCCCGCAAGAGTAGCATGCGCTGCCCAAGA TGTGTCAGCGATGACACCAGAACGGACCGACTTGAAACTATGAAGTATCA ATCACAAGTCCTTTTGAAAAGTTGACTGAAACCGAGACTCCAAACGACCG GCCCCGGCGCCAAGCATCGCAAACACCAGACGCCCTTGTGCTGTATTTTC GTTCATGAGAGGCGATCCCGCTCCCCTCCATTTCTGCCGCCCAACATACA CCGCCTGACACCACGGGCACCACAGGGAAATCGGGTTCTGCCCGCAGCCG GCCCAACGTCTAGGGCAGGACAGGCGGAGCGCTCAAACGGCATCAGGGAC CAATGTGACGGGGATGCGGTGAAGGGGGATTCCGACGACTGGGGATGTGG TGACATCGCGACGTGGCGGGCGGTGCACGAGCGGGCAGCGTGGCACTTCA TACCTGATGCCCGGGCAGTCGGGCAAATTGTCGACACGATAGAATATTTC TACGTCGAGCAGGTGCGCGTGGGCGCATATTTCACACAGACCGAGCGGTG TGTGTGGGCGCATATTTCACACAAGGCCGCCACGAAGATGACAGCCCAAG TGTATATGTCGCCAGACGGTCGGGTGGTCGTGGCTTCGTATGTGGAGTAG GTCGAGGGTCATTGCACATTCGGCGTCGGAATCCATTGCCTTCCTGGTAC ACGTCATGATAAACGAAGAGGAGAATAAACGTATGGGGTGAACTCCCGTC CATACTGGACCTCGCCGAGATTGTTACCTTCCTCCAAACCTGAACGTTGA CCATGACAGGGGCTCGAACCTGTCCAGGCGCACCAAGCATGCCGAGATAG GTTGCTACCTTCCGTCGAACCGGCGGCGCTCGGGACTAGGAGTCAACAGC GGGCTACCCTGCCGCAAATTCTCTCTTCTCCCGGCAAGGCGCGATGTGAA CACAGGGTGCAGCTGTCTCAGAACGATTCCCCCACGACCGCGGGCGACGA CGACCTGGACAACAGAAACCTCCGACAGTCTCCGCAAGAACCAAACAATG ACGGCAAGTCTCCCAGCGGTATTGCATCGAAAGGGGCGCAGCCCTGCCAA GACGGAGAGCCAATCGCTCTTCCGTACCACTGCCCCGAGGCTGAACAAGA AGGCGTAGGGGCACCGCCCCCTCTCGGGGACGAAGTCGTAGCACCCATAT GCAACACCCCCGCTGTGCAAAAGGGTGTCAGTCACGAAAAGGTACGGGGC TGTCCAATCAGCCGGGACGATGCGGATCGAATGAGGGCTCACGGGGCTTT TTCTGCAGGCTCTATGAGGTCCACGTCTTCGGCTGGATCTGGCAGTTCTA TGGCAACGAAGCAACAGCAGCAGCTGCAGCAGCTGCAGCAGCAGCAGCAG CAGCAGCAGCAATCAAGGGCCCACGAGACAGGAAACAACCAGGTGCCTTT TCCCTTGGAACGGTTTGCACCAAGAGCTAACAAGGTCAACAACGAACATG TTTTGGCAACGGCATCACTGGGGTACCAGCCGATGCGAGTACCAGCCTAT GCGAGTACCAGCCGACGCTAGTGTTGTACGTGATCAGAATACTGGTATTA TGAGTTGTGCTAGATATACATTTATGGTATCATGAGTTGTGCATAATCTG GAGGCATGTCGTAGTAAACGTATTGTTTGCCGGCTCAGCAACGTCCTCAG GTGTGCGTGTGTGTGTGACAGCGGACGCTGACGCTGATAGCGTACGGGCG GGAATGATGTTGTATCATACGCATTTTCAGACCTACCTACACCTGGTACG AAGTGTCTATACCAGCGCTTAACCAGGAGCGAAGAGTGCAGAAAGCTCGT GGTCCTCATACGACAACAGTAGCATAAAGCACACAGTACATCATTGGTCA CACGGAGATGAGACTGCAACCGTCCCGCAATCCACCGTAACCGACAGTTC AACCAACCCGCTGCACCAAACCTACAGATGAAGGAAGGCGGAGACAAGGC AGGCGGCGAACGATGGACGCCGCAATCGAACTGGCCACCTCCAGATCTAG TCCTCATGGAGGATGTCTACGAGCAGGTAAAAAACTCATAGAGAAACGAC CGTACGATCATAGACAGACGACCGTACGATCATGTATACTCCAGGCTTGA TTCATAGGCAAACATTCTTGGAAGTTTCGCCTAGAAAGCGGGCAGTGCGT TGCGAAGGCAAAACATGCCTCATTTCTACCAGATTGTGTCAAAGAGTAGG GGTGGGGGGGGGTGTACTCATAGTCGTGCATGCCGTAGTTGTGAGACCAT TGACCTCGCATCCCTACAAAGCCGGTACGGAGCACGCCGGGTTCTCACCG GACCACGCTCTCACACCACCAAGCGCGAAGCACCGTGAGATATTCGGCGA GTCGCATTAAGGGTGCGCTGCATCCTGCCAAGGGTGTTCGGCATCTTGTG CTTACTTCCTTGCAAACGGATGACCGCTGCGTATGACTTACTTTATTTTC TGGTGCCTTCACTTCCAGAGACAGTTGTAAGCACTGTGTAACTGTCTCGA GGGTGCTTGACCATTTTAACACAACGTGGTGCGATCATCCCCCTTGCGCG GAGTGAGGGTTCTCCACCCCGCACAACATGATCTACTCGACCACCATTAT GGATTCCGCAAAAAAAAAAAAAACAGAGGGCAAAAAAAACCGGTTACCTG GTTGTCGAGTTCACGAAGTGAATTGACTTGTTTTACAACGTCGTTGCCAG ACTAGGGAGCGCATCAAATATAGACATTCCACAGGTTTAGGTGATATATG TCGTGTAGAAGGGATACCCCGACAAAATGACTAGACGTTTGAAAGATGGT TCCTACCACAGCACCAACTTTCATTTAGGCATTGCCCTATACGCTCATGT GCAAGTCGAGATTGACTGAGCGTGGAAGACGCGCCGAATCGTGAAATTCC GGAACAGGCGTGCCAAAAGCAGGTAATAAACGAAGTGCAGATATGACCAC TTCTTCCAGCATTTTTTGGCAAACATTGCACGATGGCCCCGCCCCGAAAG CCTCACCGACACTTTCCCCGACTTGTCTGACACAATTCCGAACGCTTGCA GATGCTACGTGTCCCATATGGCGATGCCGTTCGGGAAAGCGGCTACCAGA GTGAACTGTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1286:10532..17042-

>mRNA_E-siliculosus-1a_F_contig1286.1748.1 ID=mRNA_E-siliculosus-1a_F_contig1286.1748.1|Name=mRNA_E-siliculosus-1a_F_contig1286.1748.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2490bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1286:10532..17042- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGAGTACCATGGATGGATTCACACGCACGTGGAGATGCCTGGATCG
CTTGAACGTGGAAGACGAGCTCGTTCAGATGGCGAGTACCATGGATGGAT
TCACACGCACGTGGAGATGCCTGGATCGCTTGAACGTGGAAGACGAGCTC
GTTCAGGACCTTACGAATCCAAACTTCGTTTTGAGAAATGTCGACCTGGC
GTTTTCCTGCTGTGGCCAGACCCGTGCAGTGGAGGAGGGCTACCTCCGAC
GGAAGGAAGTGCAGGACCTTACGAATCCAAACTTCGTTTTGAGAAATGTC
GACCTGGCGTTTTCCTGCTGTGGCCAGACCCGTGCAGTGGAGGAGGGCTA
CCTCCGACGGAAGGAAGTGCAGAGGTTGATTTGTTCGCAGTGCCTGTTCG
TGGCGGGGTTCCTTCCTCCCATGTTCAAGCAAATGGCCGGTATCGACAAG
AAGTCCAAAAGGATGGCTTTCGGCGGCCCGCTGATCGGAATCGTCGGGGC
GGGTGGCCAACTAGGAGGTTGATTTGTTCGCAGTGCCTGTTCGTGGCGGG
GTTCCTTCCTCCCATGTTCAAGCAAATGGCCGGTATCGACAAGAAGTCCA
AAAGGATGGCTTTCGGCGGCCCGCTGATCGGAATCGTCGGGGCGGGTGGC
CAACTAGGATCGGCTATAGTCCAGACGTTTCTTGACTACGGCTGGAAGCC
TTTCCGTTTGGCCGTGTCTGGCAGGGGCCAGAAAAAACTCCGCAAGTTTG
AGATCGGCTATAGTCCAGACGTTTCTTGACTACGGCTGGAAGCCTTTCCG
TTTGGCCGTGTCTGGCAGGGGCCAGAAAAAACTCCGCAAGTTTGAGGCGC
TAGGTGTCGGTGTGTTTGAAGACGTGTCGCTGCTGGTCCGTGCGGTGCGG
TTGGTCATAGTGGCCGTCGGACCCCAGCACGCTAGACAAGTCGGCTCGAC
CCTCGCGCTAGGTGTCGGTGTGTTTGAAGACGTGTCGCTGCTGGTCCGTG
CGGTGCGGTTGGTCATAGTGGCCGTCGGACCCCAGCACGCTAGACAAGTC
GGCTCGACCCTCGGAGATAATGGTACGGCATCAGCTTTGGTCATGAGCAC
CCTGGCGGGCATCAGCGAGGGGAGCCTAAAACGAGTCTTGGGAACGGAGA
ATGTAATTCAGGCAAGGGTGGACATCGCTCGGCTTGACGTCATGGAAACG
ATGGGAGATAATGGTACGGCATCAGCTTTGGTCATGAGCACCCTGGCGGG
CATCAGCGAGGGGAGCCTAAAACGAGTCTTGGGAACGGAGAATGTAATTC
AGGCAAGGGTGGACATCGCTCGGCTTGACGTCATGGAAACGATGGGAAAT
CGGGTTCTGCCCGCAGCCGGCCCAACGTCTAGGGCAGGACAGGCGGAGCG
CTCAAACGGCATCAGGGACCAATGTGACGGGGATGCGGTGAAGGGGGATT
CCGACGACTGGGGATGTGGTGACATCGCGACGTGGCGGGCGGTGCACGAG
CGGGCAGCGTGGCACTTCATACCTGATGCCCGGGCAGTCGGGCAAATTGT
CGACACGATAGAATATTTCTACGTCGAGCAGGGAAATCGGGTTCTGCCCG
CAGCCGGCCCAACGTCTAGGGCAGGACAGGCGGAGCGCTCAAACGGCATC
AGGGACCAATGTGACGGGGATGCGGTGAAGGGGGATTCCGACGACTGGGG
ATGTGGTGACATCGCGACGTGGCGGGCGGTGCACGAGCGGGCAGCGTGGC
ACTTCATACCTGATGCCCGGGCAGTCGGGCAAATTGTCGACACGATAGAA
TATTTCTACGTCGAGCAGGGGCTCGAACCTGTCCAGGCGCACCAAGCATG
CCGAGATAGGTTGCTACCTTCCGTCGAACCGGCGGCGCTCGGGACTAGGA
GTCAACAGCGGGCTACCCTGCCGCAAATTCTCTCTTCTCCCGGCAAGGCG
CGATGTGAACACAGGGGGCTCGAACCTGTCCAGGCGCACCAAGCATGCCG
AGATAGGTTGCTACCTTCCGTCGAACCGGCGGCGCTCGGGACTAGGAGTC
AACAGCGGGCTACCCTGCCGCAAATTCTCTCTTCTCCCGGCAAGGCGCGA
TGTGAACACAGGTTCAACCAACCCGCTGCACCAAACCTACAGATGAAGGA
AGGCGGAGACAAGGCAGGCGGCGAACGATGGACGCCGCAATCGAACTGGC
CACCTCCAGATCTAGTCCTCATGGAGGATGTCTACGAGCAGTTCAACCAA
CCCGCTGCACCAAACCTACAGATGAAGGAAGGCGGAGACAAGGCAGGCGG
CGAACGATGGACGCCGCAATCGAACTGGCCACCTCCAGATCTAGTCCTCA
TGGAGGATGTCTACGAGCAGATGCTACGTGTCCCATATGGCGATGCCGTT
CGGGAAAGCGGCTACCAGAGTGAACTGTGAATGCTACGTGTCCCATATGG
CGATGCCGTTCGGGAAAGCGGCTACCAGAGTGAACTGTGA
back to top