mRNA_E-siliculosus-1a_F_contig1286.1748.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1286.1748.1 vs. uniprot
Match: D7G366_ECTSI (F420_oxidored domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G366_ECTSI) HSP 1 Score: 735 bits (1897), Expect = 1.820e-266 Identity = 372/414 (89.86%), Postives = 386/414 (93.24%), Query Frame = 1
Query: 1 MASTMDGFTRTWRCLDRLNVEDELVQDLTNPNFVLRNVDLAFSCCGQTRAVEEGYLRRKEVQRLICSQCLFVAGFLPPMFKQMAGIDKKSKRMAFGGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLGDNGTASALVMSTLAGISEGSLKRVLGTENVIQARVDIARLDVMETMGNRVLPAAGPTSRAGQAERSNGIRDQCDGDAVKGDSDDWGCGDIATWRAVHERAAWHFIPDARAVGQIVDTIEYFYVEQGLEPVQAHQACRDRLLPSVEPAALGTRSQQRATLPQILSSPGKARCEHRFNQPAAPNLQMKEGGDKAGGERWTPQSNWPPPDLVLMEDVYEQMLRVPYGDAVRESGYQSEL 1242
MASTMDGFTRTWRC+DRLNVEDELVQDLT+PNFVLRNVDLAFSCCGQT AVEEGYLRRKEVQRLICSQCLFVAGFLPPMFKQMAGIDKKSKRMA GGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLG+NGTASALVMSTLAGISEGSLKRVLGTEN+IQARVDIARLDVMETMGN+ LPAAGPTSR GQAERSNGI+DQCDGDA+KGDSDDWGCGDIATWRAVHERA+WHF PDARAVG+I++TIE FYVEQGLEPVQA QACRD LLPSVEPAALGTRS QRA LP+ LSSP + P PNLQMKE GDK G ERWTP+S WPPPDLVLMEDVYEQMLRVPYGDAVRESGYQS L
Sbjct: 1 MASTMDGFTRTWRCMDRLNVEDELVQDLTDPNFVLRNVDLAFSCCGQTPAVEEGYLRRKEVQRLICSQCLFVAGFLPPMFKQMAGIDKKSKRMAVGGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLGENGTASALVMSTLAGISEGSLKRVLGTENLIQARVDIARLDVMETMGNKGLPAAGPTSRVGQAERSNGIKDQCDGDAMKGDSDDWGCGDIATWRAVHERASWHFTPDARAVGKIIETIESFYVEQGLEPVQARQACRDWLLPSVEPAALGTRSHQRANLPRTLSSPVQP-------HPLHPNLQMKEDGDKPGCERWTPRSYWPPPDLVLMEDVYEQMLRVPYGDAVRESGYQSGL 407
BLAST of mRNA_E-siliculosus-1a_F_contig1286.1748.1 vs. uniprot
Match: D7G368_ECTSI (F420_oxidored domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G368_ECTSI) HSP 1 Score: 482 bits (1240), Expect = 4.650e-168 Identity = 245/270 (90.74%), Postives = 257/270 (95.19%), Query Frame = 1
Query: 235 MFKQMAGIDKKSKRMAFGGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLGDNGTASALVMSTLAGISEGSLKRVLGTENVIQARVDIARLDVMETMGNRVLPAAGPTSRAGQAERSNGIRDQCDGDAVKGDSDDWGCGDIATWRAVHERAAWHFIPDARAVGQIVDTIEYFYVEQGLEPVQAHQACRDRLLPSVEPAALGTRSQQRATLPQILSSPGKAR 1044
MFKQMAGIDKKSKRMA GGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLG+NGTASALVMS LAGISEGSLKRVLGTEN+IQARVDIARLDVMETMGN+ LPAAGPTSR GQAERSNGI+DQCDGDA+KGDSDDWGCGDIATWRAVHERA+WHF PDARA+G+I++TIE FYVEQGLEPVQA QACRDRLLPSVEPA LGTRS QRA LP+ LSSP + R
Sbjct: 1 MFKQMAGIDKKSKRMAVGGPLIGIVGAGGQLGSAIVQTFLDYGWKPFRLAVSGRGQKKLRKFEALGVGVFEDVSLLVRAVRLVIVAVGPQHARQVGSTLGENGTASALVMSNLAGISEGSLKRVLGTENLIQARVDIARLDVMETMGNKGLPAAGPTSRVGQAERSNGIKDQCDGDAMKGDSDDWGCGDIATWRAVHERASWHFTPDARAIGKIIETIESFYVEQGLEPVQARQACRDRLLPSVEPAVLGTRSHQRANLPRTLSSPDEGR 270 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1286.1748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1286.1748.1 >prot_E-siliculosus-1a_F_contig1286.1748.1 ID=prot_E-siliculosus-1a_F_contig1286.1748.1|Name=mRNA_E-siliculosus-1a_F_contig1286.1748.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=415bp MASTMDGFTRTWRCLDRLNVEDELVQDLTNPNFVLRNVDLAFSCCGQTRAback to top mRNA from alignment at E-siliculosus-1a_F_contig1286:10532..17042- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1286.1748.1 ID=mRNA_E-siliculosus-1a_F_contig1286.1748.1|Name=mRNA_E-siliculosus-1a_F_contig1286.1748.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6511bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1286:10532..17042- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1286:10532..17042- >mRNA_E-siliculosus-1a_F_contig1286.1748.1 ID=mRNA_E-siliculosus-1a_F_contig1286.1748.1|Name=mRNA_E-siliculosus-1a_F_contig1286.1748.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2490bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1286:10532..17042- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |