mRNA_E-siliculosus-1a_F_contig12856.1746.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12856.1746.1
Unique NamemRNA_E-siliculosus-1a_F_contig12856.1746.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12856.1746.1 vs. uniprot
Match: A0A7X3H214_9GAMM (RidA family protein n=1 Tax=Halomonas zhuhanensis TaxID=2684210 RepID=A0A7X3H214_9GAMM)

HSP 1 Score: 217 bits (552), Expect = 6.970e-71
Identity = 110/123 (89.43%), Postives = 118/123 (95.93%), Query Frame = 1
Query:    1 MIQPVRTDLYAAKAPLEWAVVGNGILFTAQIPIDADGAVVEGGIEAQTRQTLDNLQHTLKSAGAGMQQLIQVLIYVTQREDLATINRVYAEYVTAPYPNRAAIIVSGFAREEMLVEMVAYAAV 369
            MIQPV+T+LYAA+APLEWAV+GNGILFTAQIPI ADGAVV+GGIEAQTRQTLDNLQHTL+SAGA MQQL QVLIYVTQREDLAT+NRVYAEYV APYPNRAAIIV+GFAREEM VEMVAYAAV
Sbjct:    1 MIQPVKTELYAARAPLEWAVIGNGILFTAQIPIGADGAVVDGGIEAQTRQTLDNLQHTLESAGASMQQLTQVLIYVTQREDLATVNRVYAEYVAAPYPNRAAIIVTGFAREEMRVEMVAYAAV 123          
BLAST of mRNA_E-siliculosus-1a_F_contig12856.1746.1 vs. uniprot
Match: A0A7G7Z885_9GAMM (RidA family protein n=6 Tax=Halomonas TaxID=2745 RepID=A0A7G7Z885_9GAMM)

HSP 1 Score: 216 bits (550), Expect = 1.270e-70
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 1
Query:    1 MIQPVRTDLYAAKAPLEWAVVGNGILFTAQIPIDADGAVVEGGIEAQTRQTLDNLQHTLKSAGAGMQQLIQVLIYVTQREDLATINRVYAEYVTAPYPNRAAIIVSGFAREEMLVEMVAYAA 366
            MIQPV+TDLYAAKAPLEWAVVGNGILFTAQIPI ADG VVEGGIEAQ+RQTLDNL+HTL+SAGA MQQL QVLIYVTQR+DL T+NRVY+EYVTAPYPNRAAIIVSGFAREEML+EMVAYAA
Sbjct:    1 MIQPVKTDLYAAKAPLEWAVVGNGILFTAQIPIGADGIVVEGGIEAQSRQTLDNLKHTLESAGASMQQLTQVLIYVTQRDDLVTVNRVYSEYVTAPYPNRAAIIVSGFAREEMLIEMVAYAA 122          
BLAST of mRNA_E-siliculosus-1a_F_contig12856.1746.1 vs. uniprot
Match: A0A1H0CEA8_9GAMM (Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family n=1 Tax=Halomonas arcis TaxID=416873 RepID=A0A1H0CEA8_9GAMM)

HSP 1 Score: 214 bits (544), Expect = 1.160e-69
Identity = 109/124 (87.90%), Postives = 116/124 (93.55%), Query Frame = 1
Query:    1 MIQPVRTDLYAAKAPLEWAVVGNGILFTAQIPIDADGAVVEGGIEAQTRQTLDNLQHTLKSAGAGMQQLIQVLIYVTQREDLATINRVYAEYVTAPYPNRAAIIVSGFAREEMLVEMVAYAAVS 372
            MIQPV+T+LYAAKAPLEWAVVGNGILFTAQIPID DGAVVEGGIE QTRQTLDNLQHTL+SAGAGM QL QVLIYVT+REDLAT+N VYA YV  PYPNRAAIIVSGFAREEMLVEMVAYAA++
Sbjct:    1 MIQPVKTNLYAAKAPLEWAVVGNGILFTAQIPIDPDGAVVEGGIEVQTRQTLDNLQHTLESAGAGMSQLTQVLIYVTKREDLATVNEVYANYVQKPYPNRAAIIVSGFAREEMLVEMVAYAALA 124          
BLAST of mRNA_E-siliculosus-1a_F_contig12856.1746.1 vs. uniprot
Match: UPI0018A7A237 (RidA family protein n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=UPI0018A7A237)

HSP 1 Score: 211 bits (538), Expect = 1.050e-68
Identity = 108/123 (87.80%), Postives = 115/123 (93.50%), Query Frame = 1
Query:    1 MIQPVRTDLYAAKAPLEWAVVGNGILFTAQIPIDADGAVVEGGIEAQTRQTLDNLQHTLKSAGAGMQQLIQVLIYVTQREDLATINRVYAEYVTAPYPNRAAIIVSGFAREEMLVEMVAYAAV 369
            MI PV TDL+AAKAPLEWAV+GNGILFTAQIPI ADGAVVEGGIEAQ RQTLDNL+HTL SAGAGM  L QVLIYVT+REDLAT+NR+YA+YVTAPYPNRAAIIVSGFAREEMLVEMVAYAAV
Sbjct:    1 MIHPVSTDLFAAKAPLEWAVIGNGILFTAQIPIGADGAVVEGGIEAQARQTLDNLRHTLASAGAGMADLTQVLIYVTRREDLATVNRLYADYVTAPYPNRAAIIVSGFAREEMLVEMVAYAAV 123          
BLAST of mRNA_E-siliculosus-1a_F_contig12856.1746.1 vs. uniprot
Match: A0A1J0VKI7_9GAMM (Reactive intermediate/imine deaminase n=1 Tax=Halomonas aestuarii TaxID=1897729 RepID=A0A1J0VKI7_9GAMM)

HSP 1 Score: 210 bits (535), Expect = 3.100e-68
Identity = 107/127 (84.25%), Postives = 116/127 (91.34%), Query Frame = 1
Query:    1 MIQPVRTDLYAAKAPLEWAVVGNGILFTAQIPIDADGAVVEGGIEAQTRQTLDNLQHTLKSAGAGMQQLIQVLIYVTQREDLATINRVYAEYVTAPYPNRAAIIVSGFAREEMLVEMVAYAAVSEVS 381
            MIQPV TDLYAAKAPLEWAV+G+GILFTAQIPI ADGAVVEGGIEAQTRQTLDNL+HTL  AG GM  L QVLIYVT+REDLAT+NR+YAEYV+ PYPNRAAIIVSGFAREEMLVEMVAYAA+ E +
Sbjct:    1 MIQPVSTDLYAAKAPLEWAVIGHGILFTAQIPIGADGAVVEGGIEAQTRQTLDNLRHTLTCAGGGMANLTQVLIYVTRREDLATVNRLYAEYVSEPYPNRAAIIVSGFAREEMLVEMVAYAAMQETA 127          
BLAST of mRNA_E-siliculosus-1a_F_contig12856.1746.1 vs. uniprot
Match: A0A5K1I257_9GAMM (Enamine/imine deaminase n=6 Tax=Halomonas TaxID=2745 RepID=A0A5K1I257_9GAMM)

HSP 1 Score: 209 bits (532), Expect = 6.850e-68
Identity = 107/122 (87.70%), Postives = 113/122 (92.62%), Query Frame = 1
Query:    1 MIQPVRTDLYAAKAPLEWAVVGNGILFTAQIPIDADGAVVEGGIEAQTRQTLDNLQHTLKSAGAGMQQLIQVLIYVTQREDLATINRVYAEYVTAPYPNRAAIIVSGFAREEMLVEMVAYAA 366
            MIQPV TDLYAAKAPLEWAV+GNGILFTAQIPI ADGAVV+GGIEAQTRQTLDNL+HTL  AG  MQ L QVLIYVT+REDLAT+NR+YAEYV APYPNRAAIIVSGFAREEMLVEMVAYAA
Sbjct:    1 MIQPVTTDLYAAKAPLEWAVIGNGILFTAQIPIGADGAVVDGGIEAQTRQTLDNLRHTLVCAGGDMQNLTQVLIYVTRREDLATVNRLYAEYVCAPYPNRAAIIVSGFAREEMLVEMVAYAA 122          
BLAST of mRNA_E-siliculosus-1a_F_contig12856.1746.1 vs. uniprot
Match: A0A291PBT2_9GAMM (RidA/YER057c/UK114 superfamily protein n=6 Tax=Halomonas TaxID=2745 RepID=A0A291PBT2_9GAMM)

HSP 1 Score: 207 bits (526), Expect = 6.620e-67
Identity = 107/124 (86.29%), Postives = 113/124 (91.13%), Query Frame = 1
Query:    1 MIQPVRTDLYAAKAPLEWAVVGNGILFTAQIPIDADGAVVEGGIEAQTRQTLDNLQHTLKSAGAGMQQLIQVLIYVTQREDLATINRVYAEYVTAPYPNRAAIIVSGFAREEMLVEMVAYAAVS 372
            MI PVRTDL+A+KAPLEWAVVGNGILFTAQIPI ADG VVEGGIEAQTRQTLDNL HTL+ AGAG + L QVLIYVT REDLAT+NRVYAEYV  PYPNRAAIIVSGFAREEMLVEMVAYAAV+
Sbjct:    1 MIHPVRTDLFASKAPLEWAVVGNGILFTAQIPIGADGQVVEGGIEAQTRQTLDNLVHTLEKAGAGPEALTQVLIYVTAREDLATVNRVYAEYVREPYPNRAAIIVSGFAREEMLVEMVAYAAVA 124          
BLAST of mRNA_E-siliculosus-1a_F_contig12856.1746.1 vs. uniprot
Match: A0A1P8R7W5_9GAMM (Reactive intermediate/imine deaminase n=2 Tax=Halomonas TaxID=2745 RepID=A0A1P8R7W5_9GAMM)

HSP 1 Score: 206 bits (524), Expect = 1.470e-66
Identity = 103/122 (84.43%), Postives = 114/122 (93.44%), Query Frame = 1
Query:    1 MIQPVRTDLYAAKAPLEWAVVGNGILFTAQIPIDADGAVVEGGIEAQTRQTLDNLQHTLKSAGAGMQQLIQVLIYVTQREDLATINRVYAEYVTAPYPNRAAIIVSGFAREEMLVEMVAYAA 366
            MI PVRTDL+AAKAPLEWAV+GNGILFTAQIPI +DGAVV+GGIEAQ RQTL+NL+HTL  AG GMQ L QVLIYVT+REDLAT+NR+YA+YVTAP+PNRAAIIVSGFAREEMLVEMVAYAA
Sbjct:    1 MIHPVRTDLFAAKAPLEWAVIGNGILFTAQIPIGSDGAVVQGGIEAQARQTLENLRHTLACAGGGMQDLTQVLIYVTRREDLATVNRLYADYVTAPFPNRAAIIVSGFAREEMLVEMVAYAA 122          
BLAST of mRNA_E-siliculosus-1a_F_contig12856.1746.1 vs. uniprot
Match: A0A1G9P6J7_9GAMM (Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family n=1 Tax=Halomonas muralis TaxID=119000 RepID=A0A1G9P6J7_9GAMM)

HSP 1 Score: 205 bits (521), Expect = 3.710e-66
Identity = 101/124 (81.45%), Postives = 114/124 (91.94%), Query Frame = 1
Query:    1 MIQPVRTDLYAAKAPLEWAVVGNGILFTAQIPIDADGAVVEGGIEAQTRQTLDNLQHTLKSAGAGMQQLIQVLIYVTQREDLATINRVYAEYVTAPYPNRAAIIVSGFAREEMLVEMVAYAAVS 372
            MI PV+TDL+A+KAPLEWAV+GNG+LFTAQIPI ADG VVEGGIEAQTRQTLDNL+HTL+ AGAG+  L QVLIYVT R+DLAT+NR+YA+YVT PYPNRAAI+VSGFAREEM VEMVAYAAVS
Sbjct:    1 MITPVKTDLFASKAPLEWAVIGNGLLFTAQIPIGADGQVVEGGIEAQTRQTLDNLEHTLECAGAGLDSLTQVLIYVTDRDDLATVNRIYADYVTPPYPNRAAIVVSGFAREEMRVEMVAYAAVS 124          
BLAST of mRNA_E-siliculosus-1a_F_contig12856.1746.1 vs. uniprot
Match: UPI0004DB7613 (RidA family protein n=1 Tax=Halomonas zincidurans TaxID=1178777 RepID=UPI0004DB7613)

HSP 1 Score: 202 bits (514), Expect = 4.190e-65
Identity = 100/124 (80.65%), Postives = 114/124 (91.94%), Query Frame = 1
Query:    1 MIQPVRTDLYAAKAPLEWAVVGNGILFTAQIPIDADGAVVEGGIEAQTRQTLDNLQHTLKSAGAGMQQLIQVLIYVTQREDLATINRVYAEYVTAPYPNRAAIIVSGFAREEMLVEMVAYAAVS 372
            MI PV+T+L+A++APLEWAV+GNG+LFTAQIPIDADG VVEGGIEAQ RQTLDNL+HTL+ AGAGM  L QVLIYVT+R+DLAT+NRVYAEYV  PYPNRAAIIVSGFAREEM VEMVAYAA++
Sbjct:    1 MITPVKTNLFASQAPLEWAVIGNGLLFTAQIPIDADGQVVEGGIEAQVRQTLDNLEHTLRKAGAGMHALTQVLIYVTRRDDLATVNRVYAEYVQEPYPNRAAIIVSGFAREEMRVEMVAYAAIA 124          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12856.1746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X3H214_9GAMM6.970e-7189.43RidA family protein n=1 Tax=Halomonas zhuhanensis ... [more]
A0A7G7Z885_9GAMM1.270e-7089.34RidA family protein n=6 Tax=Halomonas TaxID=2745 R... [more]
A0A1H0CEA8_9GAMM1.160e-6987.90Enamine deaminase RidA, house cleaning of reactive... [more]
UPI0018A7A2371.050e-6887.80RidA family protein n=2 Tax=unclassified Halomonas... [more]
A0A1J0VKI7_9GAMM3.100e-6884.25Reactive intermediate/imine deaminase n=1 Tax=Halo... [more]
A0A5K1I257_9GAMM6.850e-6887.70Enamine/imine deaminase n=6 Tax=Halomonas TaxID=27... [more]
A0A291PBT2_9GAMM6.620e-6786.29RidA/YER057c/UK114 superfamily protein n=6 Tax=Hal... [more]
A0A1P8R7W5_9GAMM1.470e-6684.43Reactive intermediate/imine deaminase n=2 Tax=Halo... [more]
A0A1G9P6J7_9GAMM3.710e-6681.45Enamine deaminase RidA, house cleaning of reactive... [more]
UPI0004DB76134.190e-6580.65RidA family protein n=1 Tax=Halomonas zincidurans ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12856contigE-siliculosus-1a_F_contig12856:543..926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size384
Model size384
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.J
EggNOG OGs1N165@1224,1S43G@1236,1XRDD@135619,COG0251@1,COG0251@2
EggNOG free text desc.Endoribonuclease L-PSP
Seed eggNOG ortholog1118153.MOY_03273
Seed ortholog evalue8.4e-58
Seed ortholog score229.6
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927806.2313206-CDS-E-siliculosus-1a_F_contig12856:542..9261622927806.2313206-CDS-E-siliculosus-1a_F_contig12856:542..926Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12856 543..926 +
1696318687.6963265-CDS-E-siliculosus-1a_F_contig12856:542..9261696318687.6963265-CDS-E-siliculosus-1a_F_contig12856:542..926Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12856 543..926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12856.1746.1prot_E-siliculosus-1a_F_contig12856.1746.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12856 543..926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12856.1746.1

>prot_E-siliculosus-1a_F_contig12856.1746.1 ID=prot_E-siliculosus-1a_F_contig12856.1746.1|Name=mRNA_E-siliculosus-1a_F_contig12856.1746.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=128bp
MIQPVRTDLYAAKAPLEWAVVGNGILFTAQIPIDADGAVVEGGIEAQTRQ
TLDNLQHTLKSAGAGMQQLIQVLIYVTQREDLATINRVYAEYVTAPYPNR
AAIIVSGFAREEMLVEMVAYAAVSEVS*
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mRNA from alignment at E-siliculosus-1a_F_contig12856:543..926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12856.1746.1 ID=mRNA_E-siliculosus-1a_F_contig12856.1746.1|Name=mRNA_E-siliculosus-1a_F_contig12856.1746.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=384bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12856:543..926+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCCAACCGGTAAGAACTGATCTCTATGCGGCTAAGGCCCCGCTTGA ATGGGCCGTGGTCGGCAATGGCATCTTATTCACCGCACAAATTCCCATCG ACGCCGATGGGGCTGTGGTGGAAGGCGGTATCGAAGCACAAACTCGCCAG ACGCTGGATAATTTGCAACATACCCTGAAAAGCGCCGGCGCAGGAATGCA GCAACTGATTCAGGTATTGATCTACGTGACGCAACGCGAAGATCTGGCCA CCATTAATCGCGTATATGCGGAATATGTCACCGCGCCTTATCCCAATCGA GCCGCCATTATTGTGTCTGGTTTTGCGCGAGAAGAGATGTTAGTAGAAAT GGTGGCTTATGCCGCTGTATCAGAGGTTTCATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12856:543..926+

>mRNA_E-siliculosus-1a_F_contig12856.1746.1 ID=mRNA_E-siliculosus-1a_F_contig12856.1746.1|Name=mRNA_E-siliculosus-1a_F_contig12856.1746.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12856:543..926+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCCAACCGGTAAGAACTGATCTCTATGCGGCTAAGGCCCCGCTTGA
ATGGGCCGTGGTCGGCAATGGCATCTTATTCACCGCACAAATTCCCATCG
ACGCCGATGGGGCTGTGGTGGAAGGCGGTATCGAAGCACAAACTCGCCAG
ACGCTGGATAATTTGCAACATACCCTGAAAAGCGCCGGCGCAGGAATGCA
GCAACTGATTCAGGTATTGATCTACGTGACGCAACGCGAAGATCTGGCCA
CCATTAATCGCGTATATGCGGAATATGTCACCGCGCCTTATCCCAATCGA
GCCGCCATTATTGTGTCTGGTTTTGCGCGAGAAGAGATGTTAGTAGAAAT
GGTGGCTTATGCCGCTGTATCAGAGGTTTCATAGATGATCCAACCGGTAA
GAACTGATCTCTATGCGGCTAAGGCCCCGCTTGAATGGGCCGTGGTCGGC
AATGGCATCTTATTCACCGCACAAATTCCCATCGACGCCGATGGGGCTGT
GGTGGAAGGCGGTATCGAAGCACAAACTCGCCAGACGCTGGATAATTTGC
AACATACCCTGAAAAGCGCCGGCGCAGGAATGCAGCAACTGATTCAGGTA
TTGATCTACGTGACGCAACGCGAAGATCTGGCCACCATTAATCGCGTATA
TGCGGAATATGTCACCGCGCCTTATCCCAATCGAGCCGCCATTATTGTGT
CTGGTTTTGCGCGAGAAGAGATGTTAGTAGAAATGGTGGCTTATGCCGCT
GTATCAGAGGTTTCATAG
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