mRNA_E-siliculosus-1a_F_contig12808.1725.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12808.1725.1
Unique NamemRNA_E-siliculosus-1a_F_contig12808.1725.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12808.1725.1 vs. uniprot
Match: A0A455U6Z8_9GAMM (Uncharacterized protein n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A455U6Z8_9GAMM)

HSP 1 Score: 195 bits (496), Expect = 2.210e-62
Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = 1 
Query:    1 TTSIESVISLGVVILLFATIFKVLPDVVLRWQDVLIGATVTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHEFI 351
            TTS+ES+ISLGVV LLFATIFKVLPDV+LRWQDVLIGA VTAVLFT+GRS+IA YLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAV++K EF+
Sbjct:   21 TTSVESLISLGVVTLLFATIFKVLPDVMLRWQDVLIGAVVTAVLFTIGRSVIAIYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVIVKREFV 137
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BLAST of mRNA_E-siliculosus-1a_F_contig12808.1725.1 vs. uniprot
Match: A0A0F9XNX1_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9XNX1_9ZZZZ)

HSP 1 Score: 201 bits (510), Expect = 2.590e-62
Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 1 
Query:    1 TTSIESVISLGVVILLFATIFKVLPDVVLRWQDVLIGATVTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHEFI 351
            T +IES+ISLGVVILLFATIFKVLPDVVLRWQDVLIGA VTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIK EF+
Sbjct:  183 TMTIESLISLGVVILLFATIFKVLPDVVLRWQDVLIGAAVTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKQEFV 299
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BLAST of mRNA_E-siliculosus-1a_F_contig12808.1725.1 vs. uniprot
Match: A0A651D5R5_HALSX (YihY/virulence factor BrkB family protein n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A651D5R5_HALSX)

HSP 1 Score: 195 bits (495), Expect = 4.790e-60
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:    1 TTSIESVISLGVVILLFATIFKVLPDVVLRWQDVLIGATVTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHEFI 351
            TTS+ES+ISLGVVILLFATIFKVLPDVVL WQDV IGA VTA+LFT+GRSLIA YLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAV++K EF+
Sbjct:  183 TTSLESLISLGVVILLFATIFKVLPDVVLHWQDVFIGAVVTAILFTIGRSLIAIYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVVVKREFV 299
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BLAST of mRNA_E-siliculosus-1a_F_contig12808.1725.1 vs. uniprot
Match: A0A455V8A5_9GAMM (Uncharacterized protein n=1 Tax=Halomonas axialensis TaxID=115555 RepID=A0A455V8A5_9GAMM)

HSP 1 Score: 188 bits (477), Expect = 3.420e-59
Identity = 101/117 (86.32%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 TTSIESVISLGVVILLFATIFKVLPDVVLRWQDVLIGATVTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHEFI 351
            TT+ ES+ISL +V LLFATIFKVLPDVVLRWQDV IGA VTAVLFT+GRS+I  YLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPL+PRNSAVL+KHE +
Sbjct:   42 TTTAESLISLAMVALLFATIFKVLPDVVLRWQDVFIGAVVTAVLFTIGRSVITIYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLVPRNSAVLVKHELL 158
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BLAST of mRNA_E-siliculosus-1a_F_contig12808.1725.1 vs. uniprot
Match: A0A0D5M3E8_9GAMM (Ribonuclease BN n=27 Tax=Halomonadaceae TaxID=28256 RepID=A0A0D5M3E8_9GAMM)

HSP 1 Score: 191 bits (485), Expect = 1.550e-58
Identity = 102/117 (87.18%), Postives = 113/117 (96.58%), Query Frame = 1 
Query:    1 TTSIESVISLGVVILLFATIFKVLPDVVLRWQDVLIGATVTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHEFI 351
            TT++ES+IS+ +V +LFATIFKVLPDVVLRWQDVLIGA VTAVLFT+GRS+I+ YLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHE++
Sbjct:  183 TTTLESLISVAMVTMLFATIFKVLPDVVLRWQDVLIGAVVTAVLFTIGRSVISVYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHEYV 299
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BLAST of mRNA_E-siliculosus-1a_F_contig12808.1725.1 vs. uniprot
Match: A0A7X4FZ03_9GAMM (YihY family inner membrane protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A7X4FZ03_9GAMM)

HSP 1 Score: 191 bits (485), Expect = 2.440e-58
Identity = 101/116 (87.07%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:    4 TSIESVISLGVVILLFATIFKVLPDVVLRWQDVLIGATVTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHEFI 351
            +S+ES+I+LGVV+LLFATIFKVLPDV+LRWQDVLIGA VTAVLFT+GRSLIA YLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGR L+PRNSAV++K EF+
Sbjct:  184 SSVESLIALGVVVLLFATIFKVLPDVILRWQDVLIGAVVTAVLFTIGRSLIAIYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRTLVPRNSAVIVKREFV 299
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BLAST of mRNA_E-siliculosus-1a_F_contig12808.1725.1 vs. uniprot
Match: A0A060BAC4_9GAMM (Ribonuclease BN n=16 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A060BAC4_9GAMM)

HSP 1 Score: 189 bits (480), Expect = 8.850e-58
Identity = 102/117 (87.18%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 TTSIESVISLGVVILLFATIFKVLPDVVLRWQDVLIGATVTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHEFI 351
            TTS+ES+ISL +V LLFATIFKVLPDVVLRWQDVLIGA VTAVLFT+GRS+IA YL YTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPL+PRNSAVL+K E +
Sbjct:  183 TTSLESLISLAMVALLFATIFKVLPDVVLRWQDVLIGAVVTAVLFTIGRSVIAIYLTYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLVPRNSAVLVKRELV 299
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BLAST of mRNA_E-siliculosus-1a_F_contig12808.1725.1 vs. uniprot
Match: H0IXX6_9GAMM (tRNA-processing ribonuclease BN n=3 Tax=Halomonas TaxID=2745 RepID=H0IXX6_9GAMM)

HSP 1 Score: 189 bits (479), Expect = 1.250e-57
Identity = 102/117 (87.18%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 TTSIESVISLGVVILLFATIFKVLPDVVLRWQDVLIGATVTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHEFI 351
            TTS+ES+ISL VV+LLFATIFKVLPDVVL WQDV IGA VTAVLFT+GR++IA YLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPL+PRNSAVL+K E I
Sbjct:  183 TTSLESLISLAVVVLLFATIFKVLPDVVLSWQDVFIGAVVTAVLFTIGRNIIAVYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLVPRNSAVLVKRELI 299
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BLAST of mRNA_E-siliculosus-1a_F_contig12808.1725.1 vs. uniprot
Match: UPI00201E959A (YihY/virulence factor BrkB family protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201E959A)

HSP 1 Score: 188 bits (478), Expect = 1.930e-57
Identity = 102/117 (87.18%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:    1 TTSIESVISLGVVILLFATIFKVLPDVVLRWQDVLIGATVTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHEFI 351
            TT++ES+ISL +V+LLFATIFKVLPDVVLRWQDVLIGA VTAVLFT+GRS+IA YLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLL RGRPLIPRNSAVL+K E +
Sbjct:  183 TTTLESLISLAMVVLLFATIFKVLPDVVLRWQDVLIGAVVTAVLFTIGRSIIAVYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLCRGRPLIPRNSAVLVKQELV 299
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BLAST of mRNA_E-siliculosus-1a_F_contig12808.1725.1 vs. uniprot
Match: A0A1N6CZF5_9GAMM (Membrane protein n=12 Tax=Halomonas TaxID=2745 RepID=A0A1N6CZF5_9GAMM)

HSP 1 Score: 188 bits (477), Expect = 2.580e-57
Identity = 101/117 (86.32%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 TTSIESVISLGVVILLFATIFKVLPDVVLRWQDVLIGATVTAVLFTLGRSLIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLIPRNSAVLIKHEFI 351
            TT+ ES+ISL +V LLFATIFKVLPDVVLRWQDV IGA VTAVLFT+GRS+I  YLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPL+PRNSAVL+KHE +
Sbjct:  184 TTTAESLISLAMVALLFATIFKVLPDVVLRWQDVFIGAVVTAVLFTIGRSVITIYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRGRPLVPRNSAVLVKHELL 300
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12808.1725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A455U6Z8_9GAMM2.210e-6289.74Uncharacterized protein n=1 Tax=Halomonas sulfidae... [more]
A0A0F9XNX1_9ZZZZ2.590e-6294.87Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A651D5R5_HALSX4.790e-6089.74YihY/virulence factor BrkB family protein n=1 Tax=... [more]
A0A455V8A5_9GAMM3.420e-5986.32Uncharacterized protein n=1 Tax=Halomonas axialens... [more]
A0A0D5M3E8_9GAMM1.550e-5887.18Ribonuclease BN n=27 Tax=Halomonadaceae TaxID=2825... [more]
A0A7X4FZ03_9GAMM2.440e-5887.07YihY family inner membrane protein n=2 Tax=Halomon... [more]
A0A060BAC4_9GAMM8.850e-5887.18Ribonuclease BN n=16 Tax=Gammaproteobacteria TaxID... [more]
H0IXX6_9GAMM1.250e-5787.18tRNA-processing ribonuclease BN n=3 Tax=Halomonas ... [more]
UPI00201E959A1.930e-5787.18YihY/virulence factor BrkB family protein n=1 Tax=... [more]
A0A1N6CZF5_9GAMM2.580e-5786.32Membrane protein n=12 Tax=Halomonas TaxID=2745 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12808contigE-siliculosus-1a_F_contig12808:1116..1469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size354
Model size354
Exons1
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.S
EggNOG OGs1R9UY@1224,1S11F@1236,1XMXI@135619,COG1295@1,COG1295@2
EggNOG free text desc.ribonuclease BN
KEGG TC2.A.14
KEGG koko:K03303,ko:K07058
Preferred namerbn
Seed eggNOG ortholog1415755.JQLV01000001_gene2472
Seed ortholog evalue1.1e-48
Seed ortholog score199.1
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927802.0959966-CDS-E-siliculosus-1a_F_contig12808:1115..14691622927802.0959966-CDS-E-siliculosus-1a_F_contig12808:1115..1469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12808 1116..1469 -
1696318685.9086869-CDS-E-siliculosus-1a_F_contig12808:1115..14691696318685.9086869-CDS-E-siliculosus-1a_F_contig12808:1115..1469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12808 1116..1469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12808.1725.1prot_E-siliculosus-1a_F_contig12808.1725.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12808 1116..1469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12808.1725.1

>prot_E-siliculosus-1a_F_contig12808.1725.1 ID=prot_E-siliculosus-1a_F_contig12808.1725.1|Name=mRNA_E-siliculosus-1a_F_contig12808.1725.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp
TTSIESVISLGVVILLFATIFKVLPDVVLRWQDVLIGATVTAVLFTLGRS
LIAFYLAYTATASTYGAAGSVVMILLWVYYSSLILLFGAAFTRSLLLRRG
RPLIPRNSAVLIKHEFI*
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mRNA from alignment at E-siliculosus-1a_F_contig12808:1116..1469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12808.1725.1 ID=mRNA_E-siliculosus-1a_F_contig12808.1725.1|Name=mRNA_E-siliculosus-1a_F_contig12808.1725.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12808:1116..1469- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAACGTCGATCGAATCGGTGATTTCCCTTGGCGTTGTCATTCTGCTATT
CGCTACTATTTTTAAAGTGTTACCGGATGTCGTATTGCGTTGGCAAGATG
TGCTAATTGGAGCCACTGTCACCGCCGTGCTCTTCACGTTGGGGCGCAGC
TTGATTGCATTTTATCTGGCTTATACCGCTACAGCATCAACCTACGGCGC
GGCAGGGTCGGTAGTGATGATTTTGCTATGGGTCTACTATAGTTCTTTAA
TTTTGCTGTTTGGTGCTGCTTTTACTCGCTCGCTATTATTACGCCGAGGC
CGGCCATTAATTCCGCGCAATAGTGCTGTGCTTATCAAGCATGAGTTCAT
TTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12808:1116..1469-

>mRNA_E-siliculosus-1a_F_contig12808.1725.1 ID=mRNA_E-siliculosus-1a_F_contig12808.1725.1|Name=mRNA_E-siliculosus-1a_F_contig12808.1725.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12808:1116..1469- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAACGTCGATCGAATCGGTGATTTCCCTTGGCGTTGTCATTCTGCTATT
CGCTACTATTTTTAAAGTGTTACCGGATGTCGTATTGCGTTGGCAAGATG
TGCTAATTGGAGCCACTGTCACCGCCGTGCTCTTCACGTTGGGGCGCAGC
TTGATTGCATTTTATCTGGCTTATACCGCTACAGCATCAACCTACGGCGC
GGCAGGGTCGGTAGTGATGATTTTGCTATGGGTCTACTATAGTTCTTTAA
TTTTGCTGTTTGGTGCTGCTTTTACTCGCTCGCTATTATTACGCCGAGGC
CGGCCATTAATTCCGCGCAATAGTGCTGTGCTTATCAAGCATGAGTTCAT
TTAAACAACGTCGATCGAATCGGTGATTTCCCTTGGCGTTGTCATTCTGC
TATTCGCTACTATTTTTAAAGTGTTACCGGATGTCGTATTGCGTTGGCAA
GATGTGCTAATTGGAGCCACTGTCACCGCCGTGCTCTTCACGTTGGGGCG
CAGCTTGATTGCATTTTATCTGGCTTATACCGCTACAGCATCAACCTACG
GCGCGGCAGGGTCGGTAGTGATGATTTTGCTATGGGTCTACTATAGTTCT
TTAATTTTGCTGTTTGGTGCTGCTTTTACTCGCTCGCTATTATTACGCCG
AGGCCGGCCATTAATTCCGCGCAATAGTGCTGTGCTTATCAAGCATGAGT
TCATTTAA
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