mRNA_E-siliculosus-1a_F_contig12776.1697.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12776.1697.1
Unique NamemRNA_E-siliculosus-1a_F_contig12776.1697.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12776.1697.1 vs. uniprot
Match: D7FT66_ECTSI (TUG-UBL1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT66_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.280e-23
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   22 VHVVVQMACREFGLDAGSPNWVLKHKRAVVDLSQPFRFTGIPQNATLELT 171
            +  VVQMACREFGLD GSPNWVLKHKR VVDLSQPFRFTGIPQNATLELT
Sbjct:   25 MSTVVQMACREFGLDTGSPNWVLKHKRVVVDLSQPFRFTGIPQNATLELT 74
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BLAST of mRNA_E-siliculosus-1a_F_contig12776.1697.1 vs. uniprot
Match: A0A4D9D7M0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7M0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.240e-10
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 QCLPPLDVHVVVQMACREFGL-DAGSPNWVLKHKRAVVDLSQPFRFTGIPQNATLELT 171
            +C P   +   ++ ACRE G+ +A  P +VL +K+  +DLSQPFRFTGIP NA LEL+
Sbjct:   49 KCSPNSTMQTALEHACREHGIGEAAWPGYVLLYKKGPIDLSQPFRFTGIPNNAALELS 106
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BLAST of mRNA_E-siliculosus-1a_F_contig12776.1697.1 vs. uniprot
Match: K8ZCM3_NANGC (Tether containing ubx domain for glut4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZCM3_NANGC)

HSP 1 Score: 58.5 bits (140), Expect = 1.630e-9
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 QCLPPLDVHVVVQMACREFGL-DAGSPNWVLKHKRAVVDLSQPFRFTGIPQNATLELT 171
            +C P   +   ++ ACRE G+ +A    ++L +K+  +DLSQPFRFTGIP NA LEL+
Sbjct:   15 KCSPNSTMQTALEHACREHGIGEAAWTGYILLYKKGPIDLSQPFRFTGIPNNAALELS 72
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BLAST of mRNA_E-siliculosus-1a_F_contig12776.1697.1 vs. uniprot
Match: A0A1V9Z967_9STRA (UBX domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z967_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.300e-6
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   31 VVQMACREFGLDAGSPNWVLKHKRAVVDLSQPFRFTGIPQNATLELTVR 177
            V++ AC   G+DA    + L+HK AVVDLS PFR TG+  NATL++ V+
Sbjct:   25 VLRKACEAHGVDAD--RFELRHKNAVVDLSLPFRLTGVSSNATLDMVVK 71
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BLAST of mRNA_E-siliculosus-1a_F_contig12776.1697.1 vs. uniprot
Match: A0A835YJ49_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ49_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.840e-5
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   22 VHVVVQMACREFGLDAGSPNWVLKHKRAVVDLSQPFRFTGIPQNATLEL 168
            +  V+  AC   GL   +  + L HK+AVVDL+QPFR + IPQN TLEL
Sbjct:   24 MSAVLADACAAHGL-TNTAKYTLFHKKAVVDLTQPFRLSSIPQNTTLEL 71
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BLAST of mRNA_E-siliculosus-1a_F_contig12776.1697.1 vs. uniprot
Match: N6U5Z3_DENPD (UBX domain-containing protein (Fragment) n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6U5Z3_DENPD)

HSP 1 Score: 48.1 bits (113), Expect = 7.230e-5
Identity = 22/56 (39.29%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 QCLPPLDVHVVVQMACREFGLDAGSPNWVLKHKRAVVDLSQPFRFTGIPQNATLEL 168
            +C P   +  V++  C++ GL+AG  ++ +KH   V+D +  FRF+G+P NA LEL
Sbjct:   19 KCTPNTTILQVIEEVCKKQGLNAG--DYDIKHHNKVLDTTTTFRFSGLPNNAQLEL 72
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12776.1697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FT66_ECTSI1.280e-2390.00TUG-UBL1 domain-containing protein n=1 Tax=Ectocar... [more]
A0A4D9D7M0_9STRA9.240e-1050.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8ZCM3_NANGC1.630e-946.55Tether containing ubx domain for glut4 (Fragment) ... [more]
A0A1V9Z967_9STRA4.300e-651.02UBX domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A835YJ49_9STRA2.840e-551.02UBX domain-containing protein n=1 Tax=Tribonema mi... [more]
N6U5Z3_DENPD7.230e-539.29UBX domain-containing protein (Fragment) n=2 Tax=D... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12776contigE-siliculosus-1a_F_contig12776:26..202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size177
Model size177
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927798.485025-CDS-E-siliculosus-1a_F_contig12776:25..2021622927798.485025-CDS-E-siliculosus-1a_F_contig12776:25..202Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12776 26..202 -
1696318684.2066097-CDS-E-siliculosus-1a_F_contig12776:25..2021696318684.2066097-CDS-E-siliculosus-1a_F_contig12776:25..202Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12776 26..202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12776.1697.1prot_E-siliculosus-1a_F_contig12776.1697.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12776 26..202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12776.1697.1

>prot_E-siliculosus-1a_F_contig12776.1697.1 ID=prot_E-siliculosus-1a_F_contig12776.1697.1|Name=mRNA_E-siliculosus-1a_F_contig12776.1697.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=59bp
QCLPPLDVHVVVQMACREFGLDAGSPNWVLKHKRAVVDLSQPFRFTGIPQ
NATLELTVR
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mRNA from alignment at E-siliculosus-1a_F_contig12776:26..202-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12776.1697.1 ID=mRNA_E-siliculosus-1a_F_contig12776.1697.1|Name=mRNA_E-siliculosus-1a_F_contig12776.1697.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=177bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12776:26..202- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGTGCCTTCCGCCTCTTGATGTGCACGTGGTCGTGCAGATGGCCTGCAG
AGAGTTCGGACTGGACGCCGGGAGTCCCAACTGGGTTCTCAAGCACAAGC
GGGCGGTGGTGGACCTGAGCCAGCCGTTCCGCTTCACCGGCATCCCCCAA
AACGCTACCCTAGAGCTTACGGTGAGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12776:26..202-

>mRNA_E-siliculosus-1a_F_contig12776.1697.1 ID=mRNA_E-siliculosus-1a_F_contig12776.1697.1|Name=mRNA_E-siliculosus-1a_F_contig12776.1697.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12776:26..202- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGTGCCTTCCGCCTCTTGATGTGCACGTGGTCGTGCAGATGGCCTGCAG
AGAGTTCGGACTGGACGCCGGGAGTCCCAACTGGGTTCTCAAGCACAAGC
GGGCGGTGGTGGACCTGAGCCAGCCGTTCCGCTTCACCGGCATCCCCCAA
AACGCTACCCTAGAGCTTACGGTGAGACAGTGCCTTCCGCCTCTTGATGT
GCACGTGGTCGTGCAGATGGCCTGCAGAGAGTTCGGACTGGACGCCGGGA
GTCCCAACTGGGTTCTCAAGCACAAGCGGGCGGTGGTGGACCTGAGCCAG
CCGTTCCGCTTCACCGGCATCCCCCAAAACGCTACCCTAGAGCTTACGGT
GAGA
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