mRNA_E-siliculosus-1a_F_contig1274.1679.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1274.1679.1
Unique NamemRNA_E-siliculosus-1a_F_contig1274.1679.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1679.1 vs. uniprot
Match: D7FI02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI02_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 6.650e-126
Identity = 187/203 (92.12%), Postives = 191/203 (94.09%), Query Frame = 1 
Query:    1 MSGERAKLVVLGLVLAVIARSYIISDVFTRGIMMSSTLGFFEDSLCKARPPADRDGCKATLATALAPAKLSCMSVFHDFIRCRDPADGGAGGGG-NNLPCQKEKQKIFECLQAHLAPYGFSDEEIFRLIYNTQQQPPPQSKPSVEVSDHGREGEEKAKANEKPGEGDNAGGKSANRGEETDVEKGGPKVEVEHEPKQGEGGAR 606
            MSGERAKLVVLGLVLAVIARSYI+SDVFTRG MMSSTLGFFED+LCK RPPADRDGCKATLATALAPAKLSCMSVFHDF+RCRDPADGG      NNLPCQKE QKIFECLQAHLAPYGFSDEEIFRLIY TQQQPPP SKPSVEVSDHGREG+EKAKANEKPGEGDNAGGKSANRGEETDVEKGGPKVEVEHEPKQG GGAR
Sbjct:    1 MSGERAKLVVLGLVLAVIARSYIMSDVFTRGYMMSSTLGFFEDNLCKGRPPADRDGCKATLATALAPAKLSCMSVFHDFVRCRDPADGGXXXXXRNNLPCQKENQKIFECLQAHLAPYGFSDEEIFRLIYKTQQQPPPPSKPSVEVSDHGREGDEKAKANEKPGEGDNAGGKSANRGEETDVEKGGPKVEVEHEPKQGGGGAR 203
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1679.1 vs. uniprot
Match: A0A6H5L454_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L454_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 1.820e-104
Identity = 161/202 (79.70%), Postives = 173/202 (85.64%), Query Frame = 1 
Query:    1 MSGERAKLVVLGLVLAVIARSYIISDVFTRGIMMSSTLGFFEDSLCKARPPADRDGCKATLATALAPAKLSCMSVFHDFIRCRDPADGGAGGGGNNLPCQKEKQKIFECLQAHLAPYGFSDEEIFRLIYNTQQQPPPQSKPSVEVSDHGREGEEKAKANEKPGEGDNAGGKSANRGEETDVEKGGPKVEVEHEPKQGEGGAR 606
            MSGERAKLV LGLVLAVIARSYI SDVFT G+MMSST  FFED+LC+ R PADRD CKATLAT LAPAKLSCMS FHDF+ C+ PA+GG  G GN   CQKE+QK FECLQAHL P+GFSDEEI RL+Y TQQQPPPQSKPSVEVSDH REG+EKAK NEKPGEG+NAGGK  NRG+ET VEKGGPKVE EHEPKQG GGAR
Sbjct:    1 MSGERAKLVGLGLVLAVIARSYIKSDVFTHGVMMSSTARFFEDNLCEGRQPADRDDCKATLATVLAPAKLSCMSAFHDFVLCQHPAEGG--GDGNKRRCQKEQQKRFECLQAHLRPHGFSDEEIIRLLYKTQQQPPPQSKPSVEVSDHVREGDEKAKVNEKPGEGENAGGKGVNRGDETVVEKGGPKVEEEHEPKQGGGGAR 200
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI02_ECTSI6.650e-12692.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L454_9PHAE1.820e-10479.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1274contigE-siliculosus-1a_F_contig1274:13848..16697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size609
Model size609
Exons3
Ec32 orthologEc-12_006550.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1274.1679.1prot_E-siliculosus-1a_F_contig1274.1679.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1274 13848..16697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927796.184146-CDS-E-siliculosus-1a_F_contig1274:13847..139511622927796.184146-CDS-E-siliculosus-1a_F_contig1274:13847..13951Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 13848..13951 +
1696318682.86904-CDS-E-siliculosus-1a_F_contig1274:13847..139511696318682.86904-CDS-E-siliculosus-1a_F_contig1274:13847..13951Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 13848..13951 +
1622927796.1988297-CDS-E-siliculosus-1a_F_contig1274:15947..161761622927796.1988297-CDS-E-siliculosus-1a_F_contig1274:15947..16176Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 15948..16176 +
1696318682.8766322-CDS-E-siliculosus-1a_F_contig1274:15947..161761696318682.8766322-CDS-E-siliculosus-1a_F_contig1274:15947..16176Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 15948..16176 +
1622927796.2128296-CDS-E-siliculosus-1a_F_contig1274:16421..166971622927796.2128296-CDS-E-siliculosus-1a_F_contig1274:16421..16697Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 16422..16697 +
1696318682.8842251-CDS-E-siliculosus-1a_F_contig1274:16421..166971696318682.8842251-CDS-E-siliculosus-1a_F_contig1274:16421..16697Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 16422..16697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1274.1679.1

>prot_E-siliculosus-1a_F_contig1274.1679.1 ID=prot_E-siliculosus-1a_F_contig1274.1679.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1679.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=203bp
MSGERAKLVVLGLVLAVIARSYIISDVFTRGIMMSSTLGFFEDSLCKARP
PADRDGCKATLATALAPAKLSCMSVFHDFIRCRDPADGGAGGGGNNLPCQ
KEKQKIFECLQAHLAPYGFSDEEIFRLIYNTQQQPPPQSKPSVEVSDHGR
EGEEKAKANEKPGEGDNAGGKSANRGEETDVEKGGPKVEVEHEPKQGEGG
AR*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1274:13848..16697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1274.1679.1 ID=mRNA_E-siliculosus-1a_F_contig1274.1679.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1679.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2850bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1274:13848..16697+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGGGCGAGAGGGCAAAACTGGTCGTTCTCGGGCTTGTTCTTGCGGT
CATCGCCCGTTCATACATCATAAGTGATGTCTTCACGCGTGGCATCATGA
TGAGGTGAGGCCGACCTGGGTGTGCGCGGGACTGCTGTTGTTTTTTTTCC
TGCGCCAACGAGAGCACACCACACCGTAGGACACCTGCGCGGTTTTGCTT
GTGGTGTGTTCTGTGATCGATGCTGCCCGAAGGTCTAGTTCCAGAGGCGG
GAGTCCTTGTTCGTAGCCCGTACTCCACGGACCACGACGCTTTGAACGTC
GCTGTGATCCAAATTGCAGTTCCCCAGTTCCGCAGTTCGCGAGTTCGCGT
TGATCGTTCCGCCGCTCGCTGTAGTTGCGCCGCATCTCTCACCTCTGTTT
TGCGCAAACGCGCAAGCAGGCAAGCAGGCTCCGCCGGTTATATTGCTTGC
CTCCCGTCCCTTGCATACCTCCTCGACAACGAGTGAATGCCACAAGCATT
ATTCAGTAATCACGGCGTTGCCGAACGAGACGTGACAACACCGACACAGA
CATGCCGTCCCATATGTAGACCGAAGTCTTCCGAAGGTCATTTTCCACGT
CGTTACTTGTAGGCTCTACTGTAAGGATCCCACTGCGGAGTGTGGAGATA
CTTCGAAGAACCGAAAGGGATTTTCGAGTTTTGTCATCACACTTCTCCCT
AAGATTAGTATTGTTGTACCGGCTTGCTGTGCTGGTAACTTGGGAGACAT
AGTTTTGTGGGAATTGTAAACTTCCGACTATGTATACCGCTTAAATATAC
ACGCGAGGGAAGCATAAGTAGGGAGTACGGCCATCTCGGGACCGAAAAGA
AAGAGAGTCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGGCAC
TGCTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGCACGTGTGGCGAACT
ATGTACCCGGCTAATGTGGTTGCGCCTTGTTCCCCTCCCTGCTGTATGCT
ATACTCCTGTATGTCCTTTGTGTTGCCTTCGGCCTCTGTGCTGTTCTTCT
TTTTTTCATGTCCTCCCTGCCTACTCTACCTTGTTGGGTACGTTGATCTC
CCTTTTGCTGTTGTTATTTGCTTCTATAATCTGGCTGTCTGCCCATCTGC
CGTATCTTTGTTCTGTTGCCTCCATTACTCCCATGCCCTGGTGCGTAGTG
CCTGATGCTGGTACATTACCCTTTGATTTTTGTAGGTGGGTGTGGGAAGC
GTCCTCCTGTTTCCCTTCTTATTTTTACCTCTATTCTTGGTTTGTTTTAT
TTTTGATCGGTTTCCTAGGGTTCTTTTTCTCGACCGGTCGGTGCGGTAGC
TGTTCTTTTCTTTCTTCATTTCGTTTTCTTTTCCGAGTGGTTTGTACTCT
ATTTTTGTTTTGTTTCCCCGCGGCGTCGTATGTGCCGAGTTTTGCGACCA
CGGGTTCCCCATTTGTGGACTATAGAGCTAATGTGAGAAACAACAACAAC
AACAACAACAACAACAACGTCGGATAAAGTTAGCGCTCAACAAGAGGTTG
TTTCGTTGTTTGGGAAACATCCCCCCATGTATGAACGTATGAACTACTAT
ACGCACATAGGCACATGCTGGCGTCAAACCCCAAAAAGTAGTTGAGGACA
CCTTCTTGTGCATCCGGAAGTCCCTCAAGGTATGGCATAGATGGAAAGCT
CGAAAAACCCGTGCCTACTACCTCTCTCGTTCACCGAGTTGATCGTGCCC
TGCGGTCCTGTCGTCGCTGCCAGCGTTCTCTCGCTACATCTCCAGTTGAA
CCGCAACCACGTGTGTTGGTAACAATATTTCATACTCAGCGCTTCGAGGG
GCTCACATGGTCGATGACATGGTCGATGCAAAAGCAAGCCAACGGCGGTC
TTTGAGCAGATTTCTCCTGCCCCAAGTAGTCCCCTGCTCAACTAGACCGC
TGTTGGCTTGCATTGCGTAGGCCATGTGAGCCCATAAGCACTGCTGTAGC
GGAGAACCCCACAGCTGTTGCCGTCCCGTCATCCGGCCCCTGCTTATTAT
AAGGCCCCGCTTGCCCACCGACCCCTTTTCCAATGTTTTTATGGTTCCAG
TTCCACCCTCGGATTTTTCGAAGACAGCTTGTGTAAGGCAAGGCCGCCGG
CAGACCGGGATGGCTGCAAGGCCACGCTGGCGACGGCGCTTGCTCCTGCG
AAGCTCTCCTGCATGTCTGTTTTTCACGACTTCATCCGTTGTCGAGACCC
CGCCGACGGTGGTGCTGGTGGTGGTGGAAACAACCTGCCCTGCCAGAAGG
AGAAGCAGAAAATCTTCGAGTGCTTGCAGGTGTGTTCGCGCGCGTTCGGG
ACGGTGCTTGGATTGGTTCCTGTGCGACGAGCGGCTGTGCTACAGAAATG
TGCCGGTTATCTTGTGCAGGCCAAGAAGGACACAAACACACACACACCTC
TCTCTTAGCAACGTATCTGTTTCTCCTGTTTTGGGTTGCAACCTCCAAGA
GGCGCATCGCTCGCCTCCGCCACTGATGCACAAAACGACAACTCTCTTTT
GCTCCCTGGCCCCACCCGTGGCAGGCACACCTGGCACCCTACGGTTTCAG
TGACGAGGAGATCTTTCGGCTCATCTACAACACTCAGCAGCAGCCCCCCC
CGCAATCAAAACCGTCCGTGGAGGTTTCAGACCACGGCAGGGAAGGAGAA
GAGAAGGCAAAGGCCAATGAGAAGCCGGGCGAGGGTGATAACGCGGGGGG
CAAGAGTGCCAACCGTGGAGAGGAGACGGATGTAGAAAAAGGAGGGCCAA
AGGTGGAGGTAGAACATGAGCCGAAACAAGGCGAGGGCGGCGCGCGATAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1274:13848..16697+

>mRNA_E-siliculosus-1a_F_contig1274.1679.1 ID=mRNA_E-siliculosus-1a_F_contig1274.1679.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1679.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1218bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1274:13848..16697+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGGGCGAGAGGGCAAAACTGGTCGTTCTCGGGCTTGTTCTTGCGGT
CATCGCCCGTTCATACATCATAAGTGATGTCTTCACGCGTGGCATCATGA
TGAGATGTCGGGCGAGAGGGCAAAACTGGTCGTTCTCGGGCTTGTTCTTG
CGGTCATCGCCCGTTCATACATCATAAGTGATGTCTTCACGCGTGGCATC
ATGATGAGTTCCACCCTCGGATTTTTCGAAGACAGCTTGTGTAAGGCAAG
GCCGCCGGCAGACCGGGATGGCTGCAAGGCCACGCTGGCGACGGCGCTTG
CTCCTGCGAAGCTCTCCTGCATGTCTGTTTTTCACGACTTCATCCGTTGT
CGAGACCCCGCCGACGGTGGTGCTGGTGGTGGTGGAAACAACCTGCCCTG
CCAGAAGGAGAAGCAGAAAATCTTCGAGTGCTTGCAGTTCCACCCTCGGA
TTTTTCGAAGACAGCTTGTGTAAGGCAAGGCCGCCGGCAGACCGGGATGG
CTGCAAGGCCACGCTGGCGACGGCGCTTGCTCCTGCGAAGCTCTCCTGCA
TGTCTGTTTTTCACGACTTCATCCGTTGTCGAGACCCCGCCGACGGTGGT
GCTGGTGGTGGTGGAAACAACCTGCCCTGCCAGAAGGAGAAGCAGAAAAT
CTTCGAGTGCTTGCAGGCACACCTGGCACCCTACGGTTTCAGTGACGAGG
AGATCTTTCGGCTCATCTACAACACTCAGCAGCAGCCCCCCCCGCAATCA
AAACCGTCCGTGGAGGTTTCAGACCACGGCAGGGAAGGAGAAGAGAAGGC
AAAGGCCAATGAGAAGCCGGGCGAGGGTGATAACGCGGGGGGCAAGAGTG
CCAACCGTGGAGAGGAGACGGATGTAGAAAAAGGAGGGCCAAAGGTGGAG
GTAGAACATGAGCCGAAACAAGGCGAGGGCGGCGCGCGATAGGCACACCT
GGCACCCTACGGTTTCAGTGACGAGGAGATCTTTCGGCTCATCTACAACA
CTCAGCAGCAGCCCCCCCCGCAATCAAAACCGTCCGTGGAGGTTTCAGAC
CACGGCAGGGAAGGAGAAGAGAAGGCAAAGGCCAATGAGAAGCCGGGCGA
GGGTGATAACGCGGGGGGCAAGAGTGCCAACCGTGGAGAGGAGACGGATG
TAGAAAAAGGAGGGCCAAAGGTGGAGGTAGAACATGAGCCGAAACAAGGC
GAGGGCGGCGCGCGATAG
back to top