mRNA_E-siliculosus-1a_F_contig127.1656.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig127.1656.1
Unique NamemRNA_E-siliculosus-1a_F_contig127.1656.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig127.1656.1 vs. uniprot
Match: D7G1F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F2_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 9.550e-115
Identity = 189/220 (85.91%), Postives = 195/220 (88.64%), Query Frame = 1 
Query:    1 LEQGHRDAETGRREAESRLRRLQXXXXXXXXAALRMRENTTAAGASAVAISKKFRADAFDSVRQIGELRARLRDKRGELESAEEEKRELDVEISNKKATRDKVKAEVASQMEAIAISCSKVDDIDRENKSLLARAKRVEGEIDEIREAQEEMQEMAVGLQRKNAILRHELRHLKRELEGDSPGQPRMVPSRDQGRNSNXXXXHGIGNGRYRVNGGLSLCC 660
            LEQGH DAETGRREAE RLRRLQ        AA RMRENTTAAGASAVAISK+FRADAFD VRQIGELRARLRDKRGELESAEE+KRELDVEISNKKATRD VKAEV SQ+EA+A+SCSKVDDIDRENKSLLARAKRVEGEIDEIREAQEEMQEMAVGLQRKNAILRHELRHLKRELEG +P Q  MV SRDQGRNSN    H IGNGRYRVNGG SLCC
Sbjct:   63 LEQGHEDAETGRREAEGRLRRLQMQQARRKQAAARMRENTTAAGASAVAISKRFRADAFDRVRQIGELRARLRDKRGELESAEEDKRELDVEISNKKATRDTVKAEVTSQLEAVALSCSKVDDIDRENKSLLARAKRVEGEIDEIREAQEEMQEMAVGLQRKNAILRHELRHLKRELEGGNPAQSHMVSSRDQGRNSNNNNAHRIGNGRYRVNGGWSLCC 282
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BLAST of mRNA_E-siliculosus-1a_F_contig127.1656.1 vs. uniprot
Match: A0A6H5KAN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN2_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 6.830e-64
Identity = 113/131 (86.26%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:  241 SAEEEKRELDVEISNKKATRDKVKAEVASQMEAIAISCSKVDDIDRENKSLLARAKRVEGEIDEIREAQEEMQEMAVGLQRKNAILRHELRHLKRELEGDSPGQPRMVPSRDQGRNSNXXXXHGIGNGRYR 633
            SAEEEKRELDVEI NKKATRDKVKAEVAS++EA+  SCSKVDDIDRENKSLLARAKRVEGEIDEIREAQEEMQEMAVGLQRKNAILRHELR+LKRELEGD+PGQP M+ SRDQG NSN    HGIGNG  R
Sbjct:   21 SAEEEKRELDVEIGNKKATRDKVKAEVASRLEAVTTSCSKVDDIDRENKSLLARAKRVEGEIDEIREAQEEMQEMAVGLQRKNAILRHELRYLKRELEGDNPGQPHMLSSRDQGCNSNNISAHGIGNGSQR 151
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig127.1656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1F2_ECTSI9.550e-11585.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAN2_9PHAE6.830e-6486.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig127contigE-siliculosus-1a_F_contig127:19579..22144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size672
Model size672
Exons6
Ec32 orthologEc-07_000810.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig127.1656.1prot_E-siliculosus-1a_F_contig127.1656.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig127 19579..22144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927793.1075392-CDS-E-siliculosus-1a_F_contig127:19578..198271622927793.1075392-CDS-E-siliculosus-1a_F_contig127:19578..19827Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 19579..19827 -
1696318681.4905922-CDS-E-siliculosus-1a_F_contig127:19578..198271696318681.4905922-CDS-E-siliculosus-1a_F_contig127:19578..19827Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 19579..19827 -
1622927793.1175587-CDS-E-siliculosus-1a_F_contig127:20365..204821622927793.1175587-CDS-E-siliculosus-1a_F_contig127:20365..20482Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 20366..20482 -
1696318681.4985826-CDS-E-siliculosus-1a_F_contig127:20365..204821696318681.4985826-CDS-E-siliculosus-1a_F_contig127:20365..20482Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 20366..20482 -
1622927793.1278903-CDS-E-siliculosus-1a_F_contig127:20637..207011622927793.1278903-CDS-E-siliculosus-1a_F_contig127:20637..20701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 20638..20701 -
1696318681.5073588-CDS-E-siliculosus-1a_F_contig127:20637..207011696318681.5073588-CDS-E-siliculosus-1a_F_contig127:20637..20701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 20638..20701 -
1622927793.1374812-CDS-E-siliculosus-1a_F_contig127:20941..210271622927793.1374812-CDS-E-siliculosus-1a_F_contig127:20941..21027Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 20942..21027 -
1696318681.5167603-CDS-E-siliculosus-1a_F_contig127:20941..210271696318681.5167603-CDS-E-siliculosus-1a_F_contig127:20941..21027Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 20942..21027 -
1622927793.148367-CDS-E-siliculosus-1a_F_contig127:21518..215911622927793.148367-CDS-E-siliculosus-1a_F_contig127:21518..21591Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 21519..21591 -
1696318681.5257845-CDS-E-siliculosus-1a_F_contig127:21518..215911696318681.5257845-CDS-E-siliculosus-1a_F_contig127:21518..21591Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 21519..21591 -
1622927793.1586535-CDS-E-siliculosus-1a_F_contig127:22061..221441622927793.1586535-CDS-E-siliculosus-1a_F_contig127:22061..22144Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 22062..22144 -
1696318681.5351522-CDS-E-siliculosus-1a_F_contig127:22061..221441696318681.5351522-CDS-E-siliculosus-1a_F_contig127:22061..22144Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 22062..22144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig127.1656.1

>prot_E-siliculosus-1a_F_contig127.1656.1 ID=prot_E-siliculosus-1a_F_contig127.1656.1|Name=mRNA_E-siliculosus-1a_F_contig127.1656.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=224bp
LEQGHRDAETGRREAESRLRRLQQQQARRKQAALRMRENTTAAGASAVAI
SKKFRADAFDSVRQIGELRARLRDKRGELESAEEEKRELDVEISNKKATR
DKVKAEVASQMEAIAISCSKVDDIDRENKSLLARAKRVEGEIDEIREAQE
EMQEMAVGLQRKNAILRHELRHLKRELEGDSPGQPRMVPSRDQGRNSNNN
NAHGIGNGRYRVNGGLSLCCWCW*
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mRNA from alignment at E-siliculosus-1a_F_contig127:19579..22144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig127.1656.1 ID=mRNA_E-siliculosus-1a_F_contig127.1656.1|Name=mRNA_E-siliculosus-1a_F_contig127.1656.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2566bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig127:19579..22144- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTGAGCAGGGGCATAGGGACGCAGAGACCGGGCGTCGAGAGGCCGAAAG
CAGGCTGAGAAGGCTACAACAGCAGCAGGCTCGGTGAGAACCATTACCGA
TGATACTCGGAGTGAAAATCGCCAAATATTATCGTGTGGTGCATGGCGGC
TGTGTTGTTTCGGGATCGTTCAATGAAGGCGTTCATTCATGTTGATGGCT
TGGAATCAGACATATATGAGTATGACGATAAGAACTATGCCTTCTGCGTT
CACCATGTTGACGAAAAATTCGAGTGTCTAGGAAACATTGCGCAAGGTTG
ACTTCGCGAGAGGGGATTTGTGAACTGCAGTTGTCGAGTGTTCAAAGCAT
GCGCTCAGTGTCGTAAAAAAATGTCACCTGAAATGTAAGATATTTGTCGA
ACAACCACATGTCGGCGAGCATTGACGCACGTTGAACGAGGTGGCAGAAG
CACCCAGTGATGCAGAATACCTACGGCACAAATCTCTATCGCATTTTGTA
TTGTCCAATGACATCGTTTGCCCCAAAATCGCTTCCTTGCCAATACAATA
CAGGCGCAAACAGGCCGCTTTGCGCATGCGGGAAAATACTACAGCTGCAG
GCGCAAGCGCCGTAGCGATATCGAAGGTGTTGGTCCACAGCAGTGGCGGT
CCGTTGGCTTCAGAGCAAGCAATTCATTATTGACCACGACCGGGTGTGAA
CCCGTACCAGTGTGCCGTTCATCCTTGGTATATCGCTGAATATTTTCGTC
GGTGACAGTCGCGTGCTCGAGACGTGATGCACGGCTTCAAGATGAACCAT
CGGCCGTACGTTGGTGATTTGGCAGTGAACTTGCGATTTCGAGGATTTGC
AAAACTCAGATCACGATGAGGAAACGAAAACGCCAGGAATGCACACTTAC
TTATATTTTCACTCTTTCCCGTGATTCTTCAATCACTATTGCCCATGCCG
CGTTCCGGGTCGGCCGATGAAAGTTCCCGTTGCATGCGCTTCCTCCCTAT
GATAGGTATGAAATATTGATTCACTTTTCTAGATGGTATTCGAGTGAGGT
GTTGAGACTTCCTCTTGATATCTCAGTTCAGTTCGACTTTTTCTTGTCCA
TGGCACTAACTCCCCAGAAATTCCGGGCGGATGCCTTCGACAGCGTGCGT
CAGATCGGTGAGCTCCGAGCACGCCTTCGTGACAAGCGGGGCGAGCTTGA
AAGGTAAGGTTGTTTGAAGCTGATGGCGGATAGCGGAAGGTCGTGGTGTG
GTAGCCTGTTCCAGAATGACTTACCGGGGGGGTGTGAGAGCTTCGGTCCT
GTCGTTCCAGGCGAACGTCCGATGATTTATGATTTACAGTGGGAAGGTGA
TTGTCCTGTTCGGGCCACCGGTCTATTCCTCCCGTGTGCACGTCGCCAAC
AAACAAGTGTTCGTTCACAAGTTCATCTCTTCGTCACGTCTAGCGCCGAG
GAAGAGAAGAGGGAACTGGACGTGGAGATCAGCAACAAGAAGGCCACAAG
AGACAAGGTGCGAAACATCCGAGAACGACGGTCTCTGGCTTGCCCGGTGC
CCCAGAATGGTTGTTTAGATGAAAATACGACTACCGAATACACACAGTGA
CGTTCATCATCTGGGTGTTCATCATCTCTACACTCGCGTGTTTTGGTGTC
ATTTTGATGAAGGTGAAGGCCGAAGTGGCATCGCAGATGGAGGCCATCGC
AATCTCGTGCTCGAAGGTTGACGACATCGATCGTGAGAACAAGTCCTTGC
TGGCGAGAGCGAAGAGAGTGGAGGGAGAGGTGACGATATCCCAGTTTTTG
AGAGAGGGTACGAAGATACAAAGAACTTTGTCGCATTCAAGAAGCAGGCA
TGAACAAGGAAATCACATTTGTGTTGATTCTGGGTGACAAGTGCGCGTCA
TTTCATGAACGTACCAATAGAACTACCAACAAGTTGGTTGATCGTTTCCC
GTGCCCTGCTTTCAAGGATGACAAAGCTTTCAGAGTAGATCGCACAATTC
CCTTACAGCCTGAGATCGGACAATTCATTCACGTACCGGCGCAGTTGACA
ATGCGTTCAGCCTCCGACATGCAGGTGTGCAGTAGAACACTGCCTACCAA
ACTTTGCTCAAGTCGGCTGAGCACTACCGCTTGCTGCTACGAAAATAGCC
TCCTGCTCAGTCAGTTCCGTGCGAGAGACATGGGAATGGTCCATACCTCG
TTCCCGAGGGAATTTTTTAGTCGAATCCTTTGTTGGCAGTGGTGTTTAGC
TCCACAAACGAACGAGAACTGGAGAAACCACCTTTCAACCAGACCAATGA
CCCGGTTTCAACAACAGATCGACGAGATCAGGGAAGCCCAGGAGGAGATG
CAGGAAATGGCGGTTGGCCTCCAAAGAAAAAACGCAATCCTCAGGCATGA
GCTCCGCCATCTCAAACGCGAACTCGAAGGAGACAGCCCTGGACAGCCAC
GCATGGTACCTTCCCGCGACCAAGGTCGCAACAGCAACAACAACAATGCT
CACGGCATTGGAAACGGAAGGTACAGAGTGAATGGCGGGTTGTCTCTGTG
TTGTTGGTGTTGGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig127:19579..22144-

>mRNA_E-siliculosus-1a_F_contig127.1656.1 ID=mRNA_E-siliculosus-1a_F_contig127.1656.1|Name=mRNA_E-siliculosus-1a_F_contig127.1656.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig127:19579..22144- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTGAGCAGGGGCATAGGGACGCAGAGACCGGGCGTCGAGAGGCCGAAAG
CAGGCTGAGAAGGCTACAACAGCAGCAGGCTCGCTTGAGCAGGGGCATAG
GGACGCAGAGACCGGGCGTCGAGAGGCCGAAAGCAGGCTGAGAAGGCTAC
AACAGCAGCAGGCTCGGCGCAAACAGGCCGCTTTGCGCATGCGGGAAAAT
ACTACAGCTGCAGGCGCAAGCGCCGTAGCGATATCGAAGGCGCAAACAGG
CCGCTTTGCGCATGCGGGAAAATACTACAGCTGCAGGCGCAAGCGCCGTA
GCGATATCGAAGAAATTCCGGGCGGATGCCTTCGACAGCGTGCGTCAGAT
CGGTGAGCTCCGAGCACGCCTTCGTGACAAGCGGGGCGAGCTTGAAAGAA
ATTCCGGGCGGATGCCTTCGACAGCGTGCGTCAGATCGGTGAGCTCCGAG
CACGCCTTCGTGACAAGCGGGGCGAGCTTGAAAGCGCCGAGGAAGAGAAG
AGGGAACTGGACGTGGAGATCAGCAACAAGAAGGCCACAAGAGACAAGCG
CCGAGGAAGAGAAGAGGGAACTGGACGTGGAGATCAGCAACAAGAAGGCC
ACAAGAGACAAGGTGAAGGCCGAAGTGGCATCGCAGATGGAGGCCATCGC
AATCTCGTGCTCGAAGGTTGACGACATCGATCGTGAGAACAAGTCCTTGC
TGGCGAGAGCGAAGAGAGTGGAGGGAGAGGTGAAGGCCGAAGTGGCATCG
CAGATGGAGGCCATCGCAATCTCGTGCTCGAAGGTTGACGACATCGATCG
TGAGAACAAGTCCTTGCTGGCGAGAGCGAAGAGAGTGGAGGGAGAGATCG
ACGAGATCAGGGAAGCCCAGGAGGAGATGCAGGAAATGGCGGTTGGCCTC
CAAAGAAAAAACGCAATCCTCAGGCATGAGCTCCGCCATCTCAAACGCGA
ACTCGAAGGAGACAGCCCTGGACAGCCACGCATGGTACCTTCCCGCGACC
AAGGTCGCAACAGCAACAACAACAATGCTCACGGCATTGGAAACGGAAGG
TACAGAGTGAATGGCGGGTTGTCTCTGTGTTGTTGGTGTTGGTAGATCGA
CGAGATCAGGGAAGCCCAGGAGGAGATGCAGGAAATGGCGGTTGGCCTCC
AAAGAAAAAACGCAATCCTCAGGCATGAGCTCCGCCATCTCAAACGCGAA
CTCGAAGGAGACAGCCCTGGACAGCCACGCATGGTACCTTCCCGCGACCA
AGGTCGCAACAGCAACAACAACAATGCTCACGGCATTGGAAACGGAAGGT
ACAGAGTGAATGGCGGGTTGTCTCTGTGTTGTTGGTGTTGGTAG
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