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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1268.1646.1 vs. uniprot
Match: D8LLF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLF5_ECTSI) HSP 1 Score: 338 bits (867), Expect = 1.020e-113 Identity = 238/242 (98.35%), Postives = 241/242 (99.59%), Query Frame = 1
Query: 1 MEHVMSKFIKRRNRPSFEPKADKXXXXXXXXXXXXXXXXXXXXXXXXXXXRTDPYGRLCWQHRKTGQVTYGTSYALHQQGYNTGLAAKGFDSDXXXXXXXXXXXXXXXXXXXPVPALAPVAVVPPPQPYMQQPQYGISPVPQQYYGHSPVPYGVSPVAMYPAAPWNAMPASPVPVQVPEYIKRQHAEALKAKXXXXXXXXXXXXXXXXXIAAGVWEKLYTRDGGKFWQHSVTGETSKTDPYY 726
MEHVMSKFIKRRNRPSFEPKADKXXXXXXXXXXXXXXXXXXXXXXXXXXXRTDPYGRLCWQHR+TGQVTYGTSYALHQQGYNTGLAAKGFDSDXXXXXXXXXXXXXXXXXX PVPALAPVAVVPPPQPYMQQPQYGISPVP+QYYGHSPVPYG+SPVAMYPAAPWNAMPASPVPVQVPEYIKRQHAEALKAKXXXXXXXXXXXXXXXXXIAAGVWEKLYTRDGGKFWQHSVTGETSKTDPYY
Sbjct: 1 MEHVMSKFIKRRNRPSFEPKADKXXXXXXXXXXXXXXXXXXXXXXXXXXXRTDPYGRLCWQHRQTGQVTYGTSYALHQQGYNTGLAAKGFDSDXXXXXXXXXXXXXXXXXX-PVPALAPVAVVPPPQPYMQQPQYGISPVPRQYYGHSPVPYGMSPVAMYPAAPWNAMPASPVPVQVPEYIKRQHAEALKAKXXXXXXXXXXXXXXXXXIAAGVWEKLYTRDGGKFWQHSVTGETSKTDPYY 241
BLAST of mRNA_E-siliculosus-1a_F_contig1268.1646.1 vs. uniprot
Match: A0A6H5KIW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIW0_9PHAE) HSP 1 Score: 223 bits (568), Expect = 2.760e-69 Identity = 152/157 (96.82%), Postives = 154/157 (98.09%), Query Frame = 1
Query: 256 AAKGFDSDXXXXXXXXXXXXXXXXXXXPVPALAPVAVVPPPQPYMQQPQYGISPVPQQYYGHSPVPYGVSPVAMYPAAPWNAMPASPVPVQVPEYIKRQHAEALKAKXXXXXXXXXXXXXXXXXIAAGVWEKLYTRDGGKFWQHSVTGETSKTDPYY 726
AAKGFDSDXXXXXXXXXXXXXXXXXX PVPALAPVA+VPPPQPYMQQPQYGISPVPQQYYGHSPVPYGVSPVAMYPAAPW+AMPASPVPVQVPEYIKRQHAEALKAKXXXXXXXXXXXXXXXXXIAAG WEKLYTRDGGKFWQHSVTGE SKTDPYY
Sbjct: 27 AAKGFDSDXXXXXXXXXXXXXXXXXX-PVPALAPVALVPPPQPYMQQPQYGISPVPQQYYGHSPVPYGVSPVAMYPAAPWSAMPASPVPVQVPEYIKRQHAEALKAKXXXXXXXXXXXXXXXXXIAAGAWEKLYTRDGGKFWQHSVTGEISKTDPYY 182
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 729 |
| Model size | 1000 |
| Exons | 4 |
| Ec32 ortholog | Ec-27_002450.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927791.602284-UTR-E-siliculosus-1a_F_contig1268:23828..24099 | 1622927791.602284-UTR-E-siliculosus-1a_F_contig1268:23828..24099 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1268 23829..24099 - |
| 1696318680.714287-UTR-E-siliculosus-1a_F_contig1268:23828..24099 | 1696318680.714287-UTR-E-siliculosus-1a_F_contig1268:23828..24099 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1268 23829..24099 - |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1268.1646.1 >prot_E-siliculosus-1a_F_contig1268.1646.1 ID=prot_E-siliculosus-1a_F_contig1268.1646.1|Name=mRNA_E-siliculosus-1a_F_contig1268.1646.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=243bp
MEHVMSKFIKRRNRPSFEPKADKKETKKEETKKAEESSEDEEETEQQWEQ
RTDPYGRLCWQHRKTGQVTYGTSYALHQQGYNTGLAAKGFDSDDDDDDDK
KPAAAAAAAAAAPVPALAPVAVVPPPQPYMQQPQYGISPVPQQYYGHSPV
PYGVSPVAMYPAAPWNAMPASPVPVQVPEYIKRQHAEALKAKKKKEEEEK
KKKAAEKKKIAAGVWEKLYTRDGGKFWQHSVTGETSKTDPYY* back to topmRNA from alignment at E-siliculosus-1a_F_contig1268:23829..28053- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1268.1646.1 ID=mRNA_E-siliculosus-1a_F_contig1268.1646.1|Name=mRNA_E-siliculosus-1a_F_contig1268.1646.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4225bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1268:23829..28053- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGCATGTAATGTCTAAGTTCATCAAGAGGAGGAACCGGCCTTCGTT
CGAGCCGAAGGCCGACAAGAAAGGTGGGAGCGCGGCTGGCCTTTTTTTCC
AACTTCAAGCTGTTCACCAGCAGACAGACAACAGCAGCAGCAGGCAGGTA
GATTTGGATTTCTTCGTGCGAACGAAGCGAGACTATGTTGTTGTTTGCAC
GAGACTATGCATGTATAATCTTGCACCACGCCCCACCCTTGTTCCCCGCG
GCACAGAGACCAAGAAGGAGGAGACCAAGAAAGCAGAGGAATCGTCAGAG
GATGAAGAGGAAACGGAGCAGCAGTGGGAGCAGAGGACGGATCCTTACGG
GCGCCTGTGTTGGTGAGGTTGCGCATTCTTGTGTTTTTTTTGTGGGTGAA
AAATGTGGAGCCTCAGAGTATCCACAGCAGTCTATACCCACAGGCAGCTA
TCCCCCTGTGTCAGGCCGTGTGTAAAGGCGGACTATGTATATCGGCAGAC
GCCACTAGGAGCGCGGTCCTTTCTCTGGTTTAGTGTGTGCGCGCTTTCCG
ATCTCTGGCCCTTACATGGCCGTCACCTACTCTGTACTCTATAACTCCGT
GGGTAGGTGTTCACGAACAATAAATTATTTTCCGCTTAGTTGCGGATGGT
GTATGCAACGGACCTGGTTGTGCAAGAGTTTTCGTTGTTCCTTGCCGTTT
CGTCGTGTTTGCGTCCGCCTGCAGAGTTACATCGACGAACCTTGTACAGA
GCGCTTGATGACGCGCAATGTCGTACCGCTGCACTGCTGTACGACTAGCC
TCACCAGTCGTTTTACAAAAAAAGCTGTGGGACAAGGATGCGGAGCTTTT
TTTTCTCTCCGCAAAGACAACAACAACAACACAACCATGCACCCCTACAT
GGTTGTCCCTCTTCCGTTGTTGTTGATCCTGTCGCATCACCCGCCGCTCC
TGAGGCTCGTTCGTCTGTATCTACGAAGGGGGGCCAGGCAGCGCGCAGAA
ACGCGGACTGTTGATTCCTCTGCAATGCACTAATAGCAGTGGTAGAGAAA
AACCAGACGTTGTTGTGAAACGGCGCCCTAGACGACGTGTGGAACAACAC
ACGAGAGAAATAGTACACGAGAGCTTTTATGCGAAGAAATCGTCTTGTTG
ATTTATATTTACAATGTTGGTGTCGGGGGATCGCTGGCGTTCCACAAAAC
TCCCGTCAAATGGAAGTGTAGTTGTCCCCCCCCGCCCTCATCAATTATTG
GGTTAACAATTTGACATGACTCCATGGAGGAAGTTGAGGAGGAGAAACAG
GAAGGAAGTTATCGAACCCACCGAACGACTGACTGCTGTGTCTCAGTGCG
TGTGCACAAGCTTGTTTAGTCGCAGCTACGAAAGATTCGTGCATGCTGTC
GTTTGAACGAGGGCGCGATTCGCACCCGCCCATTCCGTCCCATTTTCTTC
CCGGCGGCGGGCGAAGTTGGGAGCCTGCGTGTGGTTTTTCCGTTATCGTG
AGGCTTCATCATGAAGCCCCGATCGGTGGCCGATGGGCGACTTGACAAAC
ACATCCAGGAAGGAAAGGTGCCCTCAGCAACTACGTAACACGTAGAAGTA
GCCCCCTTGCGTTCTTTCATGACCACGAGGGAGGGACCAGCTGCCGCACA
CCACTTTTTTTACCCTCCTCTCCAAGACCAGGCGGCACAGCAGCAGGAAT
GCCTGCTTGTGTCAAGTCTCCCCAAGAAAATACCCCCCCCAAGAAAATAA
CAGCAAGAGTTTGTACGTAGACGTGAAGAAGATCGCGAGACATGATCTAC
ATGTGGGCATTTATGGACAGACCAAAGAGAGCAGAGAGCACGAAGCTCTT
CAATATTTCGACCGAAAGGCAGTGGATAGATAGGCCATAGATGCGAGAGC
TAAGGTGAGTGCCGACGTTTTCAAGCACGGTCAAATATCGGTGCGAGATG
TTTATTTGTAACTGCCACTGCAACTTGCACTTATGGCGCATGAACCGTCC
ATGGTTTCACGCACACACCCGACCCTGCAGCTTTCATTTTTTGGTCCCCA
CACGTCTGTCTCGGGTGCTAGCCATTTACCAAACTGGGTTTTGCCCTCAA
CATTTCCGCGTGTTTGCCGTACGGCCTTTTTGCCTAGTTGCAACGAACGT
GCGACGCGGGGATCGTGGCCGGTTCACACACAACGGAGGGCCTTCTCTCT
TTTGTCTCCCCGAGGCACGCTCAACCATTGCTTCTCGGCTGTGCTGGCTC
GCGCCGTTGTTTCACGCCCGTGTCGTCTACCCCCCCCCCCACCCTGTCCT
CCCCTTCCGTCCATGCCCGAATCGTGGAGCTCGAGACTCGTACACCCTAC
CGACGAGAACGCCCGAACTTCAACGTTTCGTATACTATGCATACGACATC
CAGCTACATGCTCAGAAACTGTTTGTGGACGCGTGTAAGACAGAGATTGT
TCCACCAACGACGACGACTGCTGAGAGCGCGTTTTGGAGCGCACAACCTT
TGCAACAAAAGCGGTACATCGGTAAAAAAAACTGAAACACGAGCCAGAAG
AACAAGACGTTCGTTTCCAACAACCGTCATCAGACGACTCCCCTTCCCCC
CGAAATTCGCTCACCCCCCCCCGCCCCCCCCCGCCCCCCGCCTCCCCCCT
TCAAACCATCAACAGGCAGCACCGCAAAACCGGGCAGGTTACCTACGGCA
CCAGCTACGCCCTCCACCAGCAGGGCTACAACACCGGCCTAGCGGCGAAG
GGCTTCGACTCGGACGATGACGACGATGACGACAAGAAGCCGGCGGCCGC
CGCCGCCGCCGCCGCCGCCGCCCCTGTCCCCGCCCTTGCTCCGGTGGCCG
TGGTGCCGCCGCCGCAACCGTACATGCAGCAGCCCCAGTACGGGATATCG
CCGGTGCCCCAGCAGTACTACGGCCACTCGCCTGTGCCGTACGGGGTGTC
GCCGGTGGCCATGTACCCGGCAGCGCCCTGGAACGCTATGCCGGCGTCTC
CCGTGCCGGTCCAGGTGCCGGAGTACATCAAGCGGCAGGTGAGTAAGAGG
GAGCCCGCGGGCGGGGGGGCGGGGGGGGAGGGGGAGAGAGAGAAGGGGGA
GCGAGAAAAATATACTCCGGAGTATAGAGAAATAGAGGCGCAGAGAGAGA
GAGGAACCGCCTTGCGAGAGATTATGTTCATTCATTATTTATAGAGAGGA
AATAAATAGCACAGGAAGGGGGCGCGCAGACCCCACACCCTAGCCCAACT
CCCCAATTGCATCCTTTCTCCAACACGTTTACTTAGGACGAACTACATAG
CCTGCTACCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGTGAG
ACAGAGAGACAGAGAGAGAAGAGAGAGATATATCCCAGCCAGAAGCACCC
CAAAACATTGTGCCAAGTTGGAGTGGATCGGGCAACGGGTGTGGAGTTTT
CGTCCGCTAGTACCGTTTTGTGCTCGCGGCCTTGCGCTAGTTGTGCGCAC
TGCCTCTCACGATCACGGTGCAAGCCTGTGCTTGTATCTCCCGTTGCTTG
AAACGCTGAGGCACAGGGGATCCGCGACGAGTCCTTCTGTATATTGGTTC
CCTTTTTCCTTCCCTTTGAACCTTCTGTATGTCTCCTCCAATTCTTTGTC
ACTCAAACGTGCTTTTTTCAAACCCGGTTACTAGAGCAGCAGCACCCGGT
TGTTCACGCAAACCAAACACGTCGCTTTGGCCTGCGTTGTCCCGTCTCGC
CAAAAATAAAAAAATACTTCTCCGCAGCACGCCGAGGCCCTCAAGGCAAA
GAAGAAGAAGGAGGAGGAGGAGAAGAAGAAGAAGGCGGCGGAAAAGAAGA
AGATCGCCGCGGGGGTGTGGGAGAAGTTGTACACCAGGGACGGCGGGAAG
TTCTGGCAGCACTCGGTCACCGGAGAGACCTCCAAGACCGACCCCTACTA
CTGACGCCGCCGTCTGCGCGGAAGCGGCCCCGCGAATGCGGGGGGGGGGC
TGCCTTGGTGAGGCGGCGAGGAGAGGGGGCTGCCGCCTCGCTGATAAATT
GCGGTGGCGGCGGCGGCGACCGAGGAGAGACCGCAAAGGCACGGCGTTGC
TGGCGGAGAGGTGCGTTGGCGTAAGCCGCGCACACTTGTGAGATGGTTTT
GGGCGGGCTCGAGTGGTCATTGTTGATTGTGGCAGCACAGAACCGGGGGG
GGGGGGGGGGGGGGGGGGAAAGGGT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1268:23829..28053- >mRNA_E-siliculosus-1a_F_contig1268.1646.1 ID=mRNA_E-siliculosus-1a_F_contig1268.1646.1|Name=mRNA_E-siliculosus-1a_F_contig1268.1646.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1458bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1268:23829..28053- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGCATGTAATGTCTAAGTTCATCAAGAGGAGGAACCGGCCTTCGTT
CGAGCCGAAGGCCGACAAGAAAGATGGAGCATGTAATGTCTAAGTTCATC
AAGAGGAGGAACCGGCCTTCGTTCGAGCCGAAGGCCGACAAGAAAGAGAC
CAAGAAGGAGGAGACCAAGAAAGCAGAGGAATCGTCAGAGGATGAAGAGG
AAACGGAGCAGCAGTGGGAGCAGAGGACGGATCCTTACGGGCGCCTGTGT
TGAGACCAAGAAGGAGGAGACCAAGAAAGCAGAGGAATCGTCAGAGGATG
AAGAGGAAACGGAGCAGCAGTGGGAGCAGAGGACGGATCCTTACGGGCGC
CTGTGTTGGCAGCACCGCAAAACCGGGCAGGTTACCTACGGCACCAGCTA
CGCCCTCCACCAGCAGGGCTACAACACCGGCCTAGCGGCGAAGGGCTTCG
ACTCGGACGATGACGACGATGACGACAAGAAGCCGGCGGCCGCCGCCGCC
GCCGCCGCCGCCGCCCCTGTCCCCGCCCTTGCTCCGGTGGCCGTGGTGCC
GCCGCCGCAACCGTACATGCAGCAGCCCCAGTACGGGATATCGCCGGTGC
CCCAGCAGTACTACGGCCACTCGCCTGTGCCGTACGGGGTGTCGCCGGTG
GCCATGTACCCGGCAGCGCCCTGGAACGCTATGCCGGCGTCTCCCGTGCC
GGTCCAGGTGCCGGAGTACATCAAGCGGCAGGCAGCACCGCAAAACCGGG
CAGGTTACCTACGGCACCAGCTACGCCCTCCACCAGCAGGGCTACAACAC
CGGCCTAGCGGCGAAGGGCTTCGACTCGGACGATGACGACGATGACGACA
AGAAGCCGGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCCTGTCCCCGCC
CTTGCTCCGGTGGCCGTGGTGCCGCCGCCGCAACCGTACATGCAGCAGCC
CCAGTACGGGATATCGCCGGTGCCCCAGCAGTACTACGGCCACTCGCCTG
TGCCGTACGGGGTGTCGCCGGTGGCCATGTACCCGGCAGCGCCCTGGAAC
GCTATGCCGGCGTCTCCCGTGCCGGTCCAGGTGCCGGAGTACATCAAGCG
GCAGCACGCCGAGGCCCTCAAGGCAAAGAAGAAGAAGGAGGAGGAGGAGA
AGAAGAAGAAGGCGGCGGAAAAGAAGAAGATCGCCGCGGGGGTGTGGGAG
AAGTTGTACACCAGGGACGGCGGGAAGTTCTGGCAGCACTCGGTCACCGG
AGAGACCTCCAAGACCGACCCCTACTACTGACACGCCGAGGCCCTCAAGG
CAAAGAAGAAGAAGGAGGAGGAGGAGAAGAAGAAGAAGGCGGCGGAAAAG
AAGAAGATCGCCGCGGGGGTGTGGGAGAAGTTGTACACCAGGGACGGCGG
GAAGTTCTGGCAGCACTCGGTCACCGGAGAGACCTCCAAGACCGACCCCT
ACTACTGA back to top
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