mRNA_E-siliculosus-1a_F_contig12678.1642.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12678.1642.1
Unique NamemRNA_E-siliculosus-1a_F_contig12678.1642.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12678.1642.1 vs. uniprot
Match: A0A6H5K335_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K335_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 6.690e-46
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:    1 MLAEQPRAGLSEGPERYLAKGVRAPTKVPGFFLAGEDLTISGMEGGVMGGWIAAHAALGYTPTDMFLRRRSLASDIPNLDKLRR 252
            MLAEQPRAGLSEGPERYLAKGVRAPTKVPG FLAGEDLTISGMEGGVMGGWIAAHAALGYTPTDMFLRRRSLASDIPNLDKLRR
Sbjct:  750 MLAEQPRAGLSEGPERYLAKGVRAPTKVPGLFLAGEDLTISGMEGGVMGGWIAAHAALGYTPTDMFLRRRSLASDIPNLDKLRR 833
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BLAST of mRNA_E-siliculosus-1a_F_contig12678.1642.1 vs. uniprot
Match: A0A835Z712_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z712_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.490e-12
Identity = 37/73 (50.68%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   19 RAGLSEGPERYLAKGVRAPTKVPGFFLAGEDLTISGMEGGVMGGWIAAHAALGYTPTDMFLRRRSLASDIPNL 237
            R GLS    R  A G+RAPT VPG FLA  DL  +   GG+   WIA HA LGYTP D  + +R+L SD+  L
Sbjct:  664 RPGLSATCARAAAPGLRAPTHVPGLFLASADLCENSFAGGLDAAWIATHAVLGYTPFDFLILKRTLLSDLETL 736
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12678.1642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K335_9PHAE6.690e-4698.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z712_9STRA1.490e-1250.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12678contigE-siliculosus-1a_F_contig12678:698..1345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size255
Model size255
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelBacillariophyta
COG Functional cat.H
EggNOG OGs2XAJ9@2836,COG1233@1,KOG4254@2759
EggNOG free text desc.all-trans-retinol 13,14-reductase activity
Seed eggNOG ortholog2850.Phatr42980
Seed ortholog evalue2.4e-08
Seed ortholog score64.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927791.0880632-CDS-E-siliculosus-1a_F_contig12678:697..8031622927791.0880632-CDS-E-siliculosus-1a_F_contig12678:697..803Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12678 698..803 -
1696318680.5097249-CDS-E-siliculosus-1a_F_contig12678:697..8031696318680.5097249-CDS-E-siliculosus-1a_F_contig12678:697..803Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12678 698..803 -
1622927791.1027966-CDS-E-siliculosus-1a_F_contig12678:1196..13451622927791.1027966-CDS-E-siliculosus-1a_F_contig12678:1196..1345Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12678 1197..1345 -
1696318680.521458-CDS-E-siliculosus-1a_F_contig12678:1196..13451696318680.521458-CDS-E-siliculosus-1a_F_contig12678:1196..1345Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12678 1197..1345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12678.1642.1prot_E-siliculosus-1a_F_contig12678.1642.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12678 698..1345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12678.1642.1

>prot_E-siliculosus-1a_F_contig12678.1642.1 ID=prot_E-siliculosus-1a_F_contig12678.1642.1|Name=mRNA_E-siliculosus-1a_F_contig12678.1642.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=85bp
MLAEQPRAGLSEGPERYLAKGVRAPTKVPGFFLAGEDLTISGMEGGVMGG
WIAAHAALGYTPTDMFLRRRSLASDIPNLDKLRR*
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mRNA from alignment at E-siliculosus-1a_F_contig12678:698..1345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12678.1642.1 ID=mRNA_E-siliculosus-1a_F_contig12678.1642.1|Name=mRNA_E-siliculosus-1a_F_contig12678.1642.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=648bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12678:698..1345- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCGCCGAGCAACCCAGAGCCGGGCTCTCGGAGGGACCGGAGCGGTA
CCTGGCCAAGGGGGTGCGGGCGCCGACGAAGGTTCCGGGATTTTTCTTGG
CGGGGGAGGACCTGACCATCAGCGGGATGGAAGGAGGCGTCATGGGAGGG
TGAGTCAGGGAGACAGGGGGAAGAGAGACGGAATATCGCCGCCCGATATT
TGGTGTTTCTTTTTTTCTTTGGTGGGGGGGGGGGGGTTGAGGTTGTCGGC
TTTGCTGACTGGGTAGTGGAGCCATCCGTTTTGCGCTACACCCGTTTAGT
GGTATTTCGCTGCCTTTTCCCTGAGGTCTCTTTTATTTTGTTGCATGCGG
CTGCTGTCAGATCAGATGGCGTACCCGTGTCTTTGGGAACATTTTTTTCT
GAAAGTGTGTGCGTATGTTGCTCTTTTTGTCCTTTCTGTCGGCCGCCTGT
CGCTGTGTGTTGAACCCAGAACGGTGACGTGTCGTCTGTGCTTCCTCCCG
CGCCGCTGCTTCTGCGCCTCCCCCCCCCCCCCCCCCCTCCAGATGGATAG
CTGCGCACGCCGCGCTGGGCTACACGCCGACGGACATGTTCCTCCGCAGG
AGAAGTCTCGCCTCAGACATCCCCAACCTCGACAAGCTACGACGGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12678:698..1345-

>mRNA_E-siliculosus-1a_F_contig12678.1642.1 ID=mRNA_E-siliculosus-1a_F_contig12678.1642.1|Name=mRNA_E-siliculosus-1a_F_contig12678.1642.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=510bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12678:698..1345- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCGCCGAGCAACCCAGAGCCGGGCTCTCGGAGGGACCGGAGCGGTA
CCTGGCCAAGGGGGTGCGGGCGCCGACGAAGGTTCCGGGATTTTTCTTGG
CGGGGGAGGACCTGACCATCAGCGGGATGGAAGGAGGCGTCATGGGAGGA
TGCTCGCCGAGCAACCCAGAGCCGGGCTCTCGGAGGGACCGGAGCGGTAC
CTGGCCAAGGGGGTGCGGGCGCCGACGAAGGTTCCGGGATTTTTCTTGGC
GGGGGAGGACCTGACCATCAGCGGGATGGAAGGAGGCGTCATGGGAGGAT
GGATAGCTGCGCACGCCGCGCTGGGCTACACGCCGACGGACATGTTCCTC
CGCAGGAGAAGTCTCGCCTCAGACATCCCCAACCTCGACAAGCTACGACG
GTAGATGGATAGCTGCGCACGCCGCGCTGGGCTACACGCCGACGGACATG
TTCCTCCGCAGGAGAAGTCTCGCCTCAGACATCCCCAACCTCGACAAGCT
ACGACGGTAG
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