mRNA_E-siliculosus-1a_F_contig12658.1635.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12658.1635.1
Unique NamemRNA_E-siliculosus-1a_F_contig12658.1635.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12658.1635.1 vs. uniprot
Match: D8LFQ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ3_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 5.530e-69
Identity = 123/130 (94.62%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:    1 GKKMQGKKMHSSGGSRGPGAAAKTDVAINAYRTLIVSSRHRSYVKEDGTVRTSARRRSETKWFAYKDVRGTNGGKDIFGLKQFDTHGKEKNLSYPSDASGKDLSGFMGLGESNRLFEGGLQTYARCAAST 390
            GKKMQGKKMHSSGGSRGPGAAAKT V INAYRTLIVSSRHRSYVKEDGTVRTSARRRSE+KWFAYKDVRG NGGKDIFGLKQFDT+GKE+NLSYPSDASGKDLSGFMGLGESNRLFEG LQTYARCAAST
Sbjct: 1005 GKKMQGKKMHSSGGSRGPGAAAKTYVDINAYRTLIVSSRHRSYVKEDGTVRTSARRRSESKWFAYKDVRGINGGKDIFGLKQFDTNGKERNLSYPSDASGKDLSGFMGLGESNRLFEGDLQTYARCAAST 1134
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12658.1635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFQ3_ECTSI5.530e-6994.62Ubiquitin carboxyl-terminal hydrolase family prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12658contigE-siliculosus-1a_F_contig12658:180..1106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size384
Model size927
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12658.1635.1prot_E-siliculosus-1a_F_contig12658.1635.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12658 189..572 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927786.9077857-UTR-E-siliculosus-1a_F_contig12658:179..1881622927786.9077857-UTR-E-siliculosus-1a_F_contig12658:179..188Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12658 180..188 +
1696318679.9578001-UTR-E-siliculosus-1a_F_contig12658:179..1881696318679.9578001-UTR-E-siliculosus-1a_F_contig12658:179..188Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12658 180..188 +
1622927786.9313998-UTR-E-siliculosus-1a_F_contig12658:572..11061622927786.9313998-UTR-E-siliculosus-1a_F_contig12658:572..1106Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12658 573..1106 +
1696318679.979968-UTR-E-siliculosus-1a_F_contig12658:572..11061696318679.979968-UTR-E-siliculosus-1a_F_contig12658:572..1106Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12658 573..1106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927786.919286-CDS-E-siliculosus-1a_F_contig12658:188..5721622927786.919286-CDS-E-siliculosus-1a_F_contig12658:188..572Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12658 189..572 +
1696318679.9718175-CDS-E-siliculosus-1a_F_contig12658:188..5721696318679.9718175-CDS-E-siliculosus-1a_F_contig12658:188..572Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12658 189..572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12658.1635.1

>prot_E-siliculosus-1a_F_contig12658.1635.1 ID=prot_E-siliculosus-1a_F_contig12658.1635.1|Name=mRNA_E-siliculosus-1a_F_contig12658.1635.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=128bp
MQGKKMHSSGGSRGPGAAAKTDVAINAYRTLIVSSRHRSYVKEDGTVRTS
ARRRSETKWFAYKDVRGTNGGKDIFGLKQFDTHGKEKNLSYPSDASGKDL
SGFMGLGESNRLFEGGLQTYARCAAST*
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mRNA from alignment at E-siliculosus-1a_F_contig12658:180..1106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12658.1635.1 ID=mRNA_E-siliculosus-1a_F_contig12658.1635.1|Name=mRNA_E-siliculosus-1a_F_contig12658.1635.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=927bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12658:180..1106+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAAAAAAGATGCAGGGCAAGAAGATGCATTCCAGCGGTGGGTCACGCGG
CCCGGGTGCAGCGGCCAAGACGGACGTCGCCATCAACGCGTATCGTACCC
TGATCGTTTCGTCCCGTCACCGGTCTTACGTGAAGGAAGATGGGACTGTC
CGTACGTCGGCCAGGCGTAGATCGGAAACGAAGTGGTTCGCCTACAAGGA
CGTCAGAGGGACCAACGGAGGCAAGGACATCTTCGGACTTAAACAGTTCG
ACACGCACGGCAAAGAGAAGAACCTCTCGTACCCCTCCGACGCCTCTGGC
AAGGACCTCTCGGGGTTCATGGGCCTCGGCGAGAGCAACCGGTTGTTCGA
GGGGGGCCTCCAGACATACGCCCGGTGTGCCGCCTCGACGTAGGTTAGGT
TTGGGGTATATACGTGTGAGAGAAGAGATTGTGTTTTCTTGGTAGCCGAG
TGGTGTTGGATGGAGTTTGCAGGCTTGGGTGGATTTGATGTCAGGACATG
TGCGAGTTCGTCGTCGCTCACATCAATGGGCTTTGCCTCACTCAGGGGAG
AAAAATGTCTCGGGTGGTACTTCACTGACAAACTTCTCTTGACTGGAAGC
GGTTGGCAGTGCGACCGGCGAGATTGTCGGCGGTGTGTCAGACAGACAGC
GTACATGTTTCCATCCCGCCTCAGGGAAGGGGGTGGATAGCGTGTGCCTG
GTTGTGTGGCGTTGAATCATTCCATATGCGATATTCCGTTGATCGAGTCT
CTAGACCCAGGGAGAGAACGGGTTTGCGCGTGTGGTTCTGCCCGAGGAAC
TCAGACCCGAGAAGGCTGGAGCCAACTAGGGATGTGTGTTACCTACATAG
ATTGTCGATGCAACTTAAGTTTTCACTCAAGCAACAACCCACCGCCTGTG
GTGCCGGCCATCGACCCCCTCAACGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12658:180..1106+

>mRNA_E-siliculosus-1a_F_contig12658.1635.1 ID=mRNA_E-siliculosus-1a_F_contig12658.1635.1|Name=mRNA_E-siliculosus-1a_F_contig12658.1635.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12658:180..1106+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGGCAAGAAGATGCATTCCAGCGGTGGGTCACGCGGCCCGGGTGC
AGCGGCCAAGACGGACGTCGCCATCAACGCGTATCGTACCCTGATCGTTT
CGTCCCGTCACCGGTCTTACGTGAAGGAAGATGGGACTGTCCGTACGTCG
GCCAGGCGTAGATCGGAAACGAAGTGGTTCGCCTACAAGGACGTCAGAGG
GACCAACGGAGGCAAGGACATCTTCGGACTTAAACAGTTCGACACGCACG
GCAAAGAGAAGAACCTCTCGTACCCCTCCGACGCCTCTGGCAAGGACCTC
TCGGGGTTCATGGGCCTCGGCGAGAGCAACCGGTTGTTCGAGGGGGGCCT
CCAGACATACGCCCGGTGTGCCGCCTCGACGTAGATGCAGGGCAAGAAGA
TGCATTCCAGCGGTGGGTCACGCGGCCCGGGTGCAGCGGCCAAGACGGAC
GTCGCCATCAACGCGTATCGTACCCTGATCGTTTCGTCCCGTCACCGGTC
TTACGTGAAGGAAGATGGGACTGTCCGTACGTCGGCCAGGCGTAGATCGG
AAACGAAGTGGTTCGCCTACAAGGACGTCAGAGGGACCAACGGAGGCAAG
GACATCTTCGGACTTAAACAGTTCGACACGCACGGCAAAGAGAAGAACCT
CTCGTACCCCTCCGACGCCTCTGGCAAGGACCTCTCGGGGTTCATGGGCC
TCGGCGAGAGCAACCGGTTGTTCGAGGGGGGCCTCCAGACATACGCCCGG
TGTGCCGCCTCGACGTAG
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