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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig125.1552.1 vs. uniprot
Match: A0A6H5KKK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK3_9PHAE) HSP 1 Score: 449 bits (1156), Expect = 8.180e-149 Identity = 281/370 (75.95%), Postives = 293/370 (79.19%), Query Frame = 1
Query: 64 AQVGPAGLDAYTREHKVCDGKKFPSTILPQHTEEPTKPSQRSNQTRQEVCDRLVSVIDEMRSVLVEVRENGGGGSLTTDLAARANVALSAVTSGTSAFGDMLRLERPFDIPPKPAGVMNPLAKTARESGKRKPLASDGNNRPKRSGSKAGAAAESGGANASVSKATGSGGTASLDTETSRKSKALKTTAKSAVKGNKFSSRASSXXXXXXXXXXAALASPDADGDTGTPSTLVSGGVQXXXXXXXXXRSGGAEDPIALSSSDEDAESNGARGSTESGAMEENGTAPVPAQAYSSGVLVDHNSAQQQQQGSQGKGTAGVRTETSENHLGAQAPSNPASATHGGXXXXXXAFSSPPLPADGRVGTSGRNITP 1173
A+ GPAGLDAYTREHK NQ RQEVCDRLVSVI EMRSVL+EVRENGGGG LTTDLAARAN+ALSAVT+GTSAFGDMLRLE+PFDIP KPAGVMNPLAKTARESGKRKP ASD NN PKRSGSKAGAAA SG ANAS +ATGSGGTASLDTETSRK KALKTTAK+AVKG+K SSRASS A LAS DADGDTGTPSTLVSGGVQ RSG AEDPIALSS+DEDAESNGARGS ESGAMEENGTAPVPA+A SGVLVDHNSAQQQ G QG GTAGVRT T +N LGAQAPS A ATHGG XXXXXAFSSPPLPAD RVGTSGRN+TP
Sbjct: 10 AEAGPAGLDAYTREHK--------------------------NQARQEVCDRLVSVIYEMRSVLMEVRENGGGGPLTTDLAARANMALSAVTAGTSAFGDMLRLEQPFDIPLKPAGVMNPLAKTARESGKRKPRASDDNNGPKRSGSKAGAAAASGXANASALQATGSGGTASLDTETSRKRKALKTTAKAAVKGSKLSSRASSVTSADNNSDDAVLASRDADGDTGTPSTLVSGGVQQKEQEQV--RSGRAEDPIALSSNDEDAESNGARGSAESGAMEENGTAPVPARACPSGVLVDHNSAQQQ--GLQGTGTAGVRTGTPDNPLGAQAPSKLALATHGGGXXXXXAFSSPPLPADRRVGTSGRNLTP 349
BLAST of mRNA_E-siliculosus-1a_F_contig125.1552.1 vs. uniprot
Match: D7G8W3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W3_ECTSI) HSP 1 Score: 369 bits (947), Expect = 2.400e-119 Identity = 218/256 (85.16%), Postives = 230/256 (89.84%), Query Frame = 1
Query: 1 MCDDANNHRDPRRGSRSSWRFAQVGPAGLDAYTREHKVCDGKKFPSTILPQHTEEPTKPSQRSNQTRQEVCDRLVSVIDEMRSVLVEVRENGGGGSLTTDLAARANVALSAVTSGTSAFGDMLRLERPFDIPPKPAGVMNPLAKTARESGKRKPLASDGNNRPKRSGSKAGAAAESGGANASVSKATGSGGTASLDTETSRKSKALKTTAKSAVKGNKFSSRASSXXXXXXXXXXAALASPDADGDTGTPSTLVSG 768
MCDDA +HRDPR GSRSSW+ A+ GPAGLDAYTREHKVCD KKFP TILPQHTEEPTKPS NQ RQE+CDRLVSVIDEMRSVL+EVRE GGGGSLTTDLAA ANVALS VT+GTSAFG+ML LERPFDIP KPAGVM+PLAKTARESGKRKP ASDGNN PKRSGSKAGAAAESGGANASVS AT SGGTASLDT+ SRKSKALKTTAK+ VKG++ SS AS XXXXXXXXXXA LASPDADGDT TPSTLVSG
Sbjct: 1 MCDDATDHRDPRSGSRSSWK-AEAGPAGLDAYTREHKVCDDKKFPPTILPQHTEEPTKPSP-ENQARQEICDRLVSVIDEMRSVLMEVREKGGGGSLTTDLAACANVALSPVTAGTSAFGNMLHLERPFDIPLKPAGVMSPLAKTARESGKRKPRASDGNNEPKRSGSKAGAAAESGGANASVSNATESGGTASLDTKRSRKSKALKTTAKAVVKGSRLSSCASXXXXXXXXXXXAVLASPDADGDTATPSTLVSG 254
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1188 |
| Model size | 2304 |
| Exons | 4 |
| Ec32 ortholog | Ec-15_004470.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927771.7906063-UTR-E-siliculosus-1a_F_contig125:7026..8142 | 1622927771.7906063-UTR-E-siliculosus-1a_F_contig125:7026..8142 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig125 7027..8142 + |
| 1696318673.7561045-UTR-E-siliculosus-1a_F_contig125:7026..8142 | 1696318673.7561045-UTR-E-siliculosus-1a_F_contig125:7026..8142 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig125 7027..8142 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig125.1552.1 >prot_E-siliculosus-1a_F_contig125.1552.1 ID=prot_E-siliculosus-1a_F_contig125.1552.1|Name=mRNA_E-siliculosus-1a_F_contig125.1552.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=396bp
MCDDANNHRDPRRGSRSSWRFAQVGPAGLDAYTREHKVCDGKKFPSTILP
QHTEEPTKPSQRSNQTRQEVCDRLVSVIDEMRSVLVEVRENGGGGSLTTD
LAARANVALSAVTSGTSAFGDMLRLERPFDIPPKPAGVMNPLAKTARESG
KRKPLASDGNNRPKRSGSKAGAAAESGGANASVSKATGSGGTASLDTETS
RKSKALKTTAKSAVKGNKFSSRASSAASEDNNSDDAALASPDADGDTGTP
STLVSGGVQQKQQQQQQVRSGGAEDPIALSSSDEDAESNGARGSTESGAM
EENGTAPVPAQAYSSGVLVDHNSAQQQQQGSQGKGTAGVRTETSENHLGA
QAPSNPASATHGGGSGGGGAFSSPPLPADGRVGTSGRNITPLARP* back to topmRNA from alignment at E-siliculosus-1a_F_contig125:4267..8142+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig125.1552.1 ID=mRNA_E-siliculosus-1a_F_contig125.1552.1|Name=mRNA_E-siliculosus-1a_F_contig125.1552.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3876bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig125:4267..8142+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGTGATGACGCCAATAACCACCGGGATCCTCGGAGAGGATCTCGTTC
TTCATGGAGGTTTGTTCGGGCTCCTTGTTACTCGGGGGGGTGATCTTACG
CATGGCAGCCCGCACTTGCCGACCACTGTCCACGGCAGTCAGTCGTGCGT
GGGGGGGGGGGGGGGGTTTCCTTTTGATCGGGAGGGGCCACGGCTGAACC
CCAGTCCCGGCCACACCTCGTATGCCGGCTTCTGCTTTGAAAANNNNNNN
NNNGGGGGGGGTGCGGTCGCGGCGGGGGGCCCGGGCGGGCGCGCGGTGGC
CCCGGGCGGCGGGCCGGGGGGGGGGGGGGGGGGGGGGGGGTTATCCTTTT
CCCGCCCCCCCGACCTTTCTTTATGGTGGTGCAAGCGCCTCCAACTTGTG
TATTGGATACGTGGTTGCCGCACGTCCGAAACTCATCATTGGACGCACAC
GGCACGGTGTGGAGAAAAAATCGAAGTGAAGGGCGGGGAGAAACGTGTGC
TGCGTTTGGGGGTTAGCCAATGTTGACGAGATCTCGACTCTAAGGTGACA
ACTCGCCGCGCAACCTACCATAAGTCGTGCCCTTGCAGTAACCCTTTCGG
CCCTAACGTTGCCATATCTTGCGCCTGGCCAGCGGTCATACGGTTCGAGT
TCCCAGATGTCGGATCTCACTCCCCTGCCTTTCTGGCGGCTCTTTTTCAC
CCGTTATTCAAGAGACCATGGCTCAGAGAACAAAAGCGAACCGGTGGAGT
TCTTGCGAATGATATTCAGCTTTGCAAATACGAATTCGGTGGGGGAAACA
CTGCTTCTGCGTGCCCGCAACAGCTGTGAGGTTTTAGCCAGTCGTCCATA
TGGCTCTTTTGTAGGATTTGTCGTAGTTTGTTTTTCCACTTTCCTGCTGT
GCAGAGCGGTTTCTTGTTTTGAGGTTGCGTACCTTTTGCACTTGGTGCCC
TGTAGGGACGAGTTAAATTGAACCCTGCGCTCCCTGTCTCCCGTGCTCTC
TCGCTCTTCCATTTTATCCGCTTGCCGCCCACTAGAGGCCCAGGTGGGGC
CCGCCGGTTTGGACGCCTACACACGCGAGCACAAGGTTTGCGATGGCAAG
AAGTTTCCCTCCACAATCTTGCCGCAGCACACGGAAGAACCGACGAAGCC
CAGCCAGAGGTCCGTTCATCTGTGTTTCCCCCGTCGATTCGTCTTGCGTT
TTGAGCGATCGCAGGTGCTTCACGCCTTCAACAAAAGCTGTGTTGAATCC
CTGCTTCTCTTTGAGAACACTTTTCCCTCGCCAGCTGAACCGTGTTGCTT
TGTGTCATGTGGGTTGCTGCTTCCCCCCTCGGTCCTCATGGGCACTCTAC
CGCCAGAACCAAACCCGCCAGGAGGTATGCGATAGGCTCGTGAGCGTCAT
CGATGAGATGCGCTCCGTGCTGGTGGAAGTTCGCGAGAATGGAGGTGGCG
GCTCCCTTACCACAGACCTCGCCGCCCGCGCCAATGTGGCGCTGAGTGCG
GTGACCTCTGGGACGTCGGCGTTCGGGGACATGCTTCGCCTTGAGCGACC
CTTCGATATCCCGCCCAAACCCGCCGGGGTGATGAACCCTTTGGCCAAGA
CGGTGGGTCAGAGGCGGGACCTTTTCTTGTATATCCATTCCCTTGTGCGC
TTCACGGCACGAATTTTCGTGATCTGTCTCGGACGTGGTGATTGCTTTAG
TCCCTCTGTTCGTCGCTGGCTGTTACTTACAAGAACCGAAGTGTCTGTGT
TGCCACTACGTAGAGTTCCCGGCCCATCTTGAGCCGGTCACGCGTCTCGG
TTCCTTGGCTCAACAGCCAACATTCATAGGCCTATTGTATGGGCACGTCG
AGCGATACATACCTGTTCCCGACTCCCTTTTTCGGATCTGTAAATGAAGG
AGCGATCGGTACCGGTCGTTTAGACAAACACATGTAGGACGATTTGCACC
AATTCAATACGTCTACTGGAAAAGATTTCTTGATGCCGCCGTGTGGGCTA
TTGTCAGGCACGGGAAAGCGGCAAGCGGAAGCCGTTAGCCAGCGACGGCA
ACAATCGACCCAAGAGGTCGGGATCGAAGGCTGGGGCGGCTGCAGAAAGT
GGGGGAGCGAACGCATCCGTATCGAAGGCCACCGGGAGCGGGGGAACAGC
GTCCCTGGACACGGAGACGAGTAGGAAGAGCAAGGCCCTGAAAACGACAG
CGAAGTCGGCCGTCAAGGGCAACAAGTTCAGCAGCCGTGCTTCCAGCGCT
GCATCCGAGGACAACAACTCGGACGACGCCGCCCTCGCTTCGCCAGATGC
TGACGGGGACACCGGTACTCCGTCGACTTTGGTCAGCGGCGGCGTCCAGC
AGAAGCAGCAGCAGCAGCAGCAGGTGCGGTCGGGAGGAGCAGAAGATCCC
ATTGCGCTTAGCAGTAGCGATGAAGATGCCGAGAGCAACGGTGCGCGCGG
GTCGACAGAGTCGGGAGCGATGGAAGAGAACGGTACAGCTCCCGTTCCCG
CCCAGGCTTATTCCTCGGGGGTGTTGGTTGACCACAACAGTGCCCAGCAG
CAGCAGCAGGGCTCGCAAGGAAAAGGCACGGCTGGTGTACGCACGGAAAC
ATCTGAGAACCACCTTGGTGCACAGGCGCCGAGCAACCCTGCCTCGGCGA
CTCACGGCGGCGGCAGCGGCGGTGGAGGTGCTTTCTCGTCTCCCCCTCTG
CCCGCTGACGGGCGGGTGGGAACGTCCGGCAGAAACATCACGCCCCTAGC
TCGGCCGTGAAGCGCAAGGCCGCAGATCTCGCCACGTCGTCCGGCACTAA
AGCGAGCACCGGTGGTAGGGGTGGCAAAGACAGCAGCAGAAGTGGTGGGT
CGGGGACTGGTGCCGACTCCGATGCTTCTATTCTAGGCTAGGTGCGAAAA
GACATGCCCTTTTGTCTCAAACCGCCCTCTTTCCGTTGAGCTAGAGGTGA
GACGGTTGTCAGGATGGACTGGAAGAGATGCCGCCCCTTGTACTGTTTTA
GGACCGGGCCCGAGTACACGTTCTTAGAAGAGGGAAGAGCCACAGCACAC
ACCCAAACGTCATGTGTTGTGCAGCAGCCCGAGCGTTCGCTCGACGCGTT
TGGCGCCCGGTGCTCTCTTCTCCTTTGGGTTTCTTGAGGGAAAATAGTAT
CACGCACCTCTCTGAGACGGAAACCGAGGTGGAGTGTGACGCTTCTTATT
TTCATGTTTCGGTAAGCACAGCTTTTTTTAGGGAAGTTGTCTTGTGGTGC
CCGCTGCTATGGTGGTCGTTTTCCTCTCCCCGCCTTGGCAGTCTGTCTCG
TGATGTCTTGGGGTGTGCTGTATACGATGACTTGTTCGTCTGGCTTGGGA
GGAAGAGAGTACTTTGGCGCGGTGACGACGTGATGCTTACGTTTTCTTGT
CTTGTTCTGTTGTTGTACAGGCGTGCGAATAGTGCATCGATGGTGATTTT
GGTGTGCTTTTCGTTTGACGTATTGGCGAATTGTTTGGCCCTTGTGCCGG
CCGAGGCTAGGTATTGTTGTAGGATGCACGCCCCTCCCCGATGATGTACA
TGTCGGCGTCGTCTTGGGGTGTTCTTGTTTTTGGAGCTGGGGCGGACGCT
GTTTCTTTCCTGAGGCCACTAAATTCATGTTTTCTTTCCGGATAGTTGAG
GCGGCCGCGATTTCGCGCCGGTGTTGTGTGGGTGGTGAGGATTGAGTTTA
CAGTGCGAATTGGACCCTGGACACGCAACTTCGTTTGTGGTGTTGAGGGG
TCGCAGCAGGTGTGCTGGGGGGCGCGCGTACTCTCACAACCTCTTGGATG
CATGCGTTTGTTCTGGCGGTAGGGGAGGCACACAAGAGGAAAGAAAGGTA
GATGCTTAAGGTGTGGAGAGAAGGTG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig125:4267..8142+ >mRNA_E-siliculosus-1a_F_contig125.1552.1 ID=mRNA_E-siliculosus-1a_F_contig125.1552.1|Name=mRNA_E-siliculosus-1a_F_contig125.1552.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2376bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig125:4267..8142+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGTGATGACGCCAATAACCACCGGGATCCTCGGAGAGGATCTCGTTC
TTCATGGAGGTTTATGTGTGATGACGCCAATAACCACCGGGATCCTCGGA
GAGGATCTCGTTCTTCATGGAGGTTTGCCCAGGTGGGGCCCGCCGGTTTG
GACGCCTACACACGCGAGCACAAGGTTTGCGATGGCAAGAAGTTTCCCTC
CACAATCTTGCCGCAGCACACGGAAGAACCGACGAAGCCCAGCCAGAGGT
CCGCCCAGGTGGGGCCCGCCGGTTTGGACGCCTACACACGCGAGCACAAG
GTTTGCGATGGCAAGAAGTTTCCCTCCACAATCTTGCCGCAGCACACGGA
AGAACCGACGAAGCCCAGCCAGAGGTCCAACCAAACCCGCCAGGAGGTAT
GCGATAGGCTCGTGAGCGTCATCGATGAGATGCGCTCCGTGCTGGTGGAA
GTTCGCGAGAATGGAGGTGGCGGCTCCCTTACCACAGACCTCGCCGCCCG
CGCCAATGTGGCGCTGAGTGCGGTGACCTCTGGGACGTCGGCGTTCGGGG
ACATGCTTCGCCTTGAGCGACCCTTCGATATCCCGCCCAAACCCGCCGGG
GTGATGAACCCTTTGGCCAAGACGAACCAAACCCGCCAGGAGGTATGCGA
TAGGCTCGTGAGCGTCATCGATGAGATGCGCTCCGTGCTGGTGGAAGTTC
GCGAGAATGGAGGTGGCGGCTCCCTTACCACAGACCTCGCCGCCCGCGCC
AATGTGGCGCTGAGTGCGGTGACCTCTGGGACGTCGGCGTTCGGGGACAT
GCTTCGCCTTGAGCGACCCTTCGATATCCCGCCCAAACCCGCCGGGGTGA
TGAACCCTTTGGCCAAGACGGCACGGGAAAGCGGCAAGCGGAAGCCGTTA
GCCAGCGACGGCAACAATCGACCCAAGAGGTCGGGATCGAAGGCTGGGGC
GGCTGCAGAAAGTGGGGGAGCGAACGCATCCGTATCGAAGGCCACCGGGA
GCGGGGGAACAGCGTCCCTGGACACGGAGACGAGTAGGAAGAGCAAGGCC
CTGAAAACGACAGCGAAGTCGGCCGTCAAGGGCAACAAGTTCAGCAGCCG
TGCTTCCAGCGCTGCATCCGAGGACAACAACTCGGACGACGCCGCCCTCG
CTTCGCCAGATGCTGACGGGGACACCGGTACTCCGTCGACTTTGGTCAGC
GGCGGCGTCCAGCAGAAGCAGCAGCAGCAGCAGCAGGTGCGGTCGGGAGG
AGCAGAAGATCCCATTGCGCTTAGCAGTAGCGATGAAGATGCCGAGAGCA
ACGGTGCGCGCGGGTCGACAGAGTCGGGAGCGATGGAAGAGAACGGTACA
GCTCCCGTTCCCGCCCAGGCTTATTCCTCGGGGGTGTTGGTTGACCACAA
CAGTGCCCAGCAGCAGCAGCAGGGCTCGCAAGGAAAAGGCACGGCTGGTG
TACGCACGGAAACATCTGAGAACCACCTTGGTGCACAGGCGCCGAGCAAC
CCTGCCTCGGCGACTCACGGCGGCGGCAGCGGCGGTGGAGGTGCTTTCTC
GTCTCCCCCTCTGCCCGCTGACGGGCGGGTGGGAACGTCCGGCAGAAACA
TCACGCCCCTAGCTCGGCCGTGAGCACGGGAAAGCGGCAAGCGGAAGCCG
TTAGCCAGCGACGGCAACAATCGACCCAAGAGGTCGGGATCGAAGGCTGG
GGCGGCTGCAGAAAGTGGGGGAGCGAACGCATCCGTATCGAAGGCCACCG
GGAGCGGGGGAACAGCGTCCCTGGACACGGAGACGAGTAGGAAGAGCAAG
GCCCTGAAAACGACAGCGAAGTCGGCCGTCAAGGGCAACAAGTTCAGCAG
CCGTGCTTCCAGCGCTGCATCCGAGGACAACAACTCGGACGACGCCGCCC
TCGCTTCGCCAGATGCTGACGGGGACACCGGTACTCCGTCGACTTTGGTC
AGCGGCGGCGTCCAGCAGAAGCAGCAGCAGCAGCAGCAGGTGCGGTCGGG
AGGAGCAGAAGATCCCATTGCGCTTAGCAGTAGCGATGAAGATGCCGAGA
GCAACGGTGCGCGCGGGTCGACAGAGTCGGGAGCGATGGAAGAGAACGGT
ACAGCTCCCGTTCCCGCCCAGGCTTATTCCTCGGGGGTGTTGGTTGACCA
CAACAGTGCCCAGCAGCAGCAGCAGGGCTCGCAAGGAAAAGGCACGGCTG
GTGTACGCACGGAAACATCTGAGAACCACCTTGGTGCACAGGCGCCGAGC
AACCCTGCCTCGGCGACTCACGGCGGCGGCAGCGGCGGTGGAGGTGCTTT
CTCGTCTCCCCCTCTGCCCGCTGACGGGCGGGTGGGAACGTCCGGCAGAA
ACATCACGCCCCTAGCTCGGCCGTGA back to top
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