mRNA_E-siliculosus-1a_F_contig12490.1549.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12490.1549.1
Unique NamemRNA_E-siliculosus-1a_F_contig12490.1549.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12490.1549.1 vs. uniprot
Match: UPI0000161E54 (EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E54)

HSP 1 Score: 96.7 bits (239), Expect = 4.570e-22
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 KGRASAPRKAMIREMASRGVVLMVNEYNTSKKCPGCFGDTVEDKERRTRSCTN 159
            KGRASAPRKA+IREMASRGVVLMVNEYNTSK CPGC  DTVEDKERR RSC N
Sbjct:  660 KGRASAPRKALIREMASRGVVLMVNEYNTSKMCPGCGEDTVEDKERRIRSCKN 712
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BLAST of mRNA_E-siliculosus-1a_F_contig12490.1549.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.570e-22
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 KGRASAPRKAMIREMASRGVVLMVNEYNTSKKCPGCFGDTVEDKERRTRSCTN 159
            KGRASAPRKA+IREMASRGVVLMV EYNTSKKCPGC  DTVEDKERR RSC N
Sbjct:  699 KGRASAPRKALIREMASRGVVLMVEEYNTSKKCPGCGEDTVEDKERRIRSCKN 751
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BLAST of mRNA_E-siliculosus-1a_F_contig12490.1549.1 vs. uniprot
Match: Q6XLT6_9PHYC (FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT6_9PHYC)

HSP 1 Score: 95.5 bits (236), Expect = 1.160e-21
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 KGRASAPRKAMIREMASRGVVLMVNEYNTSKKCPGCFGDTVEDKERRTRSCTN 159
            KGRASAPRK +IREMA+RGVVLMVNEYNTSK+CPGC  DTVEDKERR RSC N
Sbjct:  669 KGRASAPRKRLIREMAARGVVLMVNEYNTSKQCPGCLEDTVEDKERRIRSCIN 721
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BLAST of mRNA_E-siliculosus-1a_F_contig12490.1549.1 vs. uniprot
Match: Q8QNA9_ESV1K (EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K)

HSP 1 Score: 49.7 bits (117), Expect = 1.600e-5
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 KGRASAPRKAMIREMASRGVVLMVNEYNTSKKCPGCFGDTVEDKE--RRTRSCT 156
            KG ASAPRK ++R + SR  V M++E+ TSK CPG  G  + D +  +R R CT
Sbjct:  588 KGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCT 641
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BLAST of mRNA_E-siliculosus-1a_F_contig12490.1549.1 vs. uniprot
Match: A0A6H5L4M4_9PHAE (Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M4_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.610e-5
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 KGRASAPRKAMIREMASRGVVLMVNEYNTSKKCPGCFGDTVEDKE--RRTRSCT 156
            KG ASAPRK ++R + SR  V M++E+ TSK CPG  G  + D +  +R R CT
Sbjct: 1215 KGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCT 1268
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12490.1549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI0000161E544.570e-2288.68EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JA56_9PHAE4.570e-2288.68DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
Q6XLT6_9PHYC1.160e-2184.91FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q8QNA9_ESV1K1.600e-548.15EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K[more]
A0A6H5L4M4_9PHAE1.610e-548.15Resolvase/invertase-type recombinase catalytic dom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12490contigE-siliculosus-1a_F_contig12490:107..265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size129
Model size159
Exons1
Ec32 orthologEc-06_006660.1
Ec32 ortholog descriptionEsvgp007
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927771.4521875-CDS-E-siliculosus-1a_F_contig12490:106..2351622927771.4521875-CDS-E-siliculosus-1a_F_contig12490:106..235Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12490 107..235 -
1696318673.6534119-CDS-E-siliculosus-1a_F_contig12490:106..2351696318673.6534119-CDS-E-siliculosus-1a_F_contig12490:106..235Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12490 107..235 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927771.4668338-UTR-E-siliculosus-1a_F_contig12490:235..2651622927771.4668338-UTR-E-siliculosus-1a_F_contig12490:235..265Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12490 236..265 -
1696318673.660681-UTR-E-siliculosus-1a_F_contig12490:235..2651696318673.660681-UTR-E-siliculosus-1a_F_contig12490:235..265Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12490 236..265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12490.1549.1prot_E-siliculosus-1a_F_contig12490.1549.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12490 107..235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12490.1549.1

>prot_E-siliculosus-1a_F_contig12490.1549.1 ID=prot_E-siliculosus-1a_F_contig12490.1549.1|Name=mRNA_E-siliculosus-1a_F_contig12490.1549.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=43bp
MIREMASRGVVLMVNEYNTSKKCPGCFGDTVEDKERRTRSCTN
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mRNA from alignment at E-siliculosus-1a_F_contig12490:107..265-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12490.1549.1 ID=mRNA_E-siliculosus-1a_F_contig12490.1549.1|Name=mRNA_E-siliculosus-1a_F_contig12490.1549.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=159bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12490:107..265- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGGGAGAGCGTCTGCCCCGAGAAAGGCTATGATAAGGGAGATGGCTAG
CAGAGGGGTGGTGTTGATGGTAAACGAGTACAATACCTCCAAAAAATGCC
CTGGGTGTTTTGGAGATACAGTCGAGGACAAAGAACGGAGAACCCGCAGT
TGCACAAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12490:107..265-

>mRNA_E-siliculosus-1a_F_contig12490.1549.1 ID=mRNA_E-siliculosus-1a_F_contig12490.1549.1|Name=mRNA_E-siliculosus-1a_F_contig12490.1549.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12490:107..265- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATAAGGGAGATGGCTAGCAGAGGGGTGGTGTTGATGGTAAACGAGTA
CAATACCTCCAAAAAATGCCCTGGGTGTTTTGGAGATACAGTCGAGGACA
AAGAACGGAGAACCCGCAGTTGCACAAACATGATAAGGGAGATGGCTAGC
AGAGGGGTGGTGTTGATGGTAAACGAGTACAATACCTCCAAAAAATGCCC
TGGGTGTTTTGGAGATACAGTCGAGGACAAAGAACGGAGAACCCGCAGTT
GCACAAAC
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